GWAS1622875_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1622875_H (pulse pressure measurement QTL GWAS1622875 (human)) Homo sapiens

Symbol: GWAS1622875_H
Name: pulse pressure measurement QTL GWAS1622875 (human)
RGD ID: 597526801
Trait: pulse pressure measurement
Measurement Type: pulse pressure   (CMO:0000292)    
LOD Score: Not Available
P Value: 2.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3861,619,912 - 1,619,913RGD_MAPPER_PIPELINEGRCh38
GRCh3761,620,147 - 1,620,148RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1622875_HHumanpulse pressure  IAGPrs2569882405850206 GWAS_CATALOGPMID:38689001

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1622875_HHumanpulse pressure measurement  IAGPrs2569882405850206 GWAS_CATALOGPMID:38689001

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs2569882)
Human AssemblyChrPosition (strand)Source
GRCh3861,619,912 - 1,619,913RGD_MAPPER_PIPELINE


1 to 10 of 12 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597381275GWAS1477349_Hcardiovascular disease QTL GWAS1477349 (human)8e-09cardiovascular disease616199121619913Human
2289408BW324_HBody weight QTL 324 (human)3.150.0001Body fat amount6120803913Human
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
597532427GWAS1628501_Hsystolic blood pressure QTL GWAS1628501 (human)3e-15systolic blood pressuresystolic blood pressure (CMO:0000004)616199121619913Human
597522410GWAS1618484_Hdiastolic blood pressure QTL GWAS1618484 (human)3e-12diastolic blood pressurediastolic blood pressure (CMO:0000005)616199121619913Human
2289435BMD4_HBone mineral density QTL 4 (human)3.150.0001Bone mineral density6120803913Human
2292824PRSTS5_HProstate tumor susceptibility QTL 5 (human)Prostate tumor susceptibility6119232373Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human
597460519GWAS1556593_Hdiastolic blood pressure QTL GWAS1556593 (human)2e-10diastolic blood pressurediastolic blood pressure (CMO:0000005)616199121619913Human
597526801GWAS1622875_Hpulse pressure measurement QTL GWAS1622875 (human)0.0000002pulse pressure measurementpulse pressure (CMO:0000292)616199121619913Human

1 to 10 of 12 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1622875_H GCST90310296 Pulse pressure 1,028,980 European ancestry individuals C NR 2E-7 6.699 rs2569882 0.0927 pulse pressure measurement (EFO:0005763)
 PMID:38689001
GWAS1477349_H GCST007072 Cardiovascular disease approximately 459,000 European ancestry individuals ? NR 8E-9 8.097 rs2569882 N/A cardiovascular disease (EFO:0000319)
 PMID:30595370
GWAS1556593_H GCST90449057 Diastolic blood pressure (MTAG) at least 757,601 European ancestry individuals (MTAG boosted by 455,258 Alzheimer's disease samples) C NR 2E-10 9.699 rs2569882 0.010923762 diastolic blood pressure (EFO:0006336)
 PMID:39537608
GWAS1568554_H GCST007087 Systolic blood pressure approximately 422,000 European ancestry individuals ? NR 3E-11 10.523 rs2569882 N/A systolic blood pressure (EFO:0006335)
 PMID:30595370
GWAS1618484_H GCST90310295 Diastolic blood pressure 1,028,980 European ancestry individuals C NR 3E-12 11.523 rs2569882 0.1087 diastolic blood pressure (EFO:0006336)
 PMID:38689001
GWAS1628501_H GCST90310294 Systolic blood pressure 1,028,980 European ancestry individuals C NR 3E-15 14.523 rs2569882 0.1982 systolic blood pressure (EFO:0006335)
 PMID:38689001
Database
Acc Id
Source(s)
GWAS Catalog GCST90310296 GWAS Catalog

Note Type Note Reference