RN7SL221P (RNA, 7SL, cytoplasmic 221, pseudogene) - Rat Genome Database

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Gene: RN7SL221P (RNA, 7SL, cytoplasmic 221, pseudogene) Homo sapiens
Analyze
Symbol: RN7SL221P
Name: RNA, 7SL, cytoplasmic 221, pseudogene
RGD ID: 10400232
HGNC Page HGNC:46237
Description:
Type: pseudo (Ensembl: misc_RNA)
RefSeq Status: INFERRED
Related Functional Gene: RN7SL1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3865,918,564 - 5,918,844 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl65,918,564 - 5,918,844 (-)EnsemblGRCh38hg38GRCh38
GRCh3765,918,797 - 5,919,077 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map6p25.1NCBI
CHM1_165,921,777 - 5,922,057 (-)NCBICHM1_1
T2T-CHM13v2.065,787,510 - 5,787,790 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:33
Count of miRNA genes:32
Interacting mature miRNAs:32
Transcripts:ENST00000466190
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 6
Low 141 53 292 60 281 56 293 42 263 119 441 318 7 73 128
Below cutoff 771 764 660 185 398 123 1187 558 1397 140 425 482 63 421 683 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000466190
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl65,918,564 - 5,918,844 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RN7SL221P COSMIC
Ensembl Genes ENSG00000239472 Ensembl, ENTREZGENE
GTEx ENSG00000239472 GTEx
HGNC ID HGNC:46237 ENTREZGENE
Human Proteome Map RN7SL221P Human Proteome Map
NCBI Gene RN7SL221P ENTREZGENE