GWAS1559169_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1559169_H (coronary artery disease QTL GWAS1559169 (human)) Homo sapiens

Symbol: GWAS1559169_H
Name: coronary artery disease QTL GWAS1559169 (human)
RGD ID: 597463095
Trait: coronary artery disease
LOD Score: Not Available
P Value: 2.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38613,022,496 - 13,022,497RGD_MAPPER_PIPELINEGRCh38
GRCh37613,022,728 - 13,022,729RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1559169_HHumancoronary artery disease  IAGPrs9381634405850206 GWAS_CATALOGPMID:39537608

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1559169_HHumanCoronary artery atherosclerosis  IAGPrs9381634405850206 GWAS_CATALOGPMID:39537608
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1559169_HHumancoronary artery disease  IAGPrs9381634405850206 GWAS_CATALOGPMID:39537608

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1353173PHACTR1phosphatase and actin regulator 161271676713287837Human


Peak: (rs9381634)
Human AssemblyChrPosition (strand)Source
GRCh38613,022,496 - 13,022,497RGD_MAPPER_PIPELINE


1 to 10 of 13 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289408BW324_HBody weight QTL 324 (human)3.150.0001Body fat amount6120803913Human
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
1643377BW325_HBody weight QTL 325 (human)2.320.0005Body fat amount6691196032911960Human
1643569GLUCO21_HGlucose level QTL 21 (human)0.021Glucose levelnon-insulin-dependent6691196032911960Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human
597463095GWAS1559169_Hcoronary artery disease QTL GWAS1559169 (human)2e-08coronary artery disease61302249613022497Human
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human
2289435BMD4_HBone mineral density QTL 4 (human)3.150.0001Bone mineral density6120803913Human
2292824PRSTS5_HProstate tumor susceptibility QTL 5 (human)Prostate tumor susceptibility6119232373Human

1 to 10 of 13 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1559169_H GCST90449059 Coronary artery disease (MTAG) at least 185,000 European or East Asian ancestry individuals (MTAG boosted by 455,258 Alzheimer's disease samples) A NR 2E-8 7.699 rs9381634 0.01938602 coronary artery disease (EFO:0001645)
 PMID:39537608
GWAS1200498_H GCST010479 Coronary artery disease 15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls A 0.3 3E-8 7.523 rs9381634 1.05 coronary artery disease (EFO:0001645)
 PMID:32469254
Database
Acc Id
Source(s)
GWAS Catalog GCST90449059 GWAS Catalog

Note Type Note Reference