GWAS1133047_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1133047_H (rheumatoid arthritis QTL GWAS1133047 (human)) Homo sapiens

Symbol: GWAS1133047_H
Name: rheumatoid arthritis QTL GWAS1133047 (human)
RGD ID: 597036973
Trait: rheumatoid arthritis
LOD Score: Not Available
P Value: 1.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386426,155 - 426,156RGD_MAPPER_PIPELINEGRCh38
GRCh376426,155 - 426,156RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1133047_HHumanrheumatoid arthritis  IAGPrs9378815405850206 GWAS_CATALOGPMID:30423114

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1133047_HHumanRheumatoid arthritis  IAGPrs9378815405850206 GWAS_CATALOGPMID:30423114
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1133047_HHumanrheumatoid arthritis  IAGPrs9378815405850206 GWAS_CATALOGPMID:30423114

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs9378815)
Human AssemblyChrPosition (strand)Source
GRCh386426,155 - 426,156RGD_MAPPER_PIPELINE


1 to 10 of 10 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289408BW324_HBody weight QTL 324 (human)3.150.0001Body fat amount6120803913Human
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
597028883GWAS1124957_Hrheumatoid arthritis QTL GWAS1124957 (human)0.0000002rheumatoid arthritis6426155426156Human
2289435BMD4_HBone mineral density QTL 4 (human)3.150.0001Bone mineral density6120803913Human
2292824PRSTS5_HProstate tumor susceptibility QTL 5 (human)Prostate tumor susceptibility6119232373Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human
597036973GWAS1133047_Hrheumatoid arthritis QTL GWAS1133047 (human)1e-11rheumatoid arthritis6426155426156Human
1643495BW291_HBody Weight QTL 291 (human)2.13Body weightBMI6119321359Human
407146906GWAS795882_Hrheumatoid arthritis QTL GWAS795882 (human)2e-10rheumatoid arthritis6426155426156Human
407146907GWAS795883_Hrheumatoid arthritis QTL GWAS795883 (human)0.0000001rheumatoid arthritis6426155426156Human

1 to 10 of 10 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1133047_H GCST006959 Rheumatoid arthritis 916 African American cases, 1,392 African American controls, G NR 1E-11 11 rs9378815 0.0968919 rheumatoid arthritis (EFO:0000685)
 PMID:30423114
GWAS1124957_H GCST006959 Rheumatoid arthritis 916 African American cases, 1,392 African American controls, G 0.34 2E-7 6.699 rs9378815 0.08807 rheumatoid arthritis (EFO:0000685)
 PMID:30423114
GWAS795882_H GCST002318 Rheumatoid arthritis up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls C 0.58 2E-10 9.699 rs9378815 1.09 rheumatoid arthritis (EFO:0000685)
 PMID:24390342
GWAS795883_H GCST002318 Rheumatoid arthritis up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls C 0.66 1E-7 7 rs9378815 1.09 rheumatoid arthritis (EFO:0000685)
 PMID:24390342
Database
Acc Id
Source(s)
GWAS Catalog GCST006959 GWAS Catalog

Note Type Note Reference