GWAS1194442_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1194442_H (sex hormone-binding globulin measurement QTL GWAS1194442 (human)) Homo sapiens

Symbol: GWAS1194442_H
Name: sex hormone-binding globulin measurement QTL GWAS1194442 (human)
RGD ID: 597098368
Trait: sex hormone-binding globulin measurement
LOD Score: Not Available
P Value: 1.0E-15
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3867,231,610 - 7,231,611RGD_MAPPER_PIPELINEGRCh38
GRCh3767,231,843 - 7,231,844RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1194442_HHumansex hormone-binding globulin measurement  IAGPrs9379084405850206 GWAS_CATALOGPMID:32042192

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1322078RREB1ras responsive element binding protein 1671077437251980Human


Peak: (rs9379084)
Human AssemblyChrPosition (strand)Source
GRCh3867,231,610 - 7,231,611RGD_MAPPER_PIPELINE


1 to 10 of 71 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597105815GWAS1201889_Htestosterone measurement QTL GWAS1201889 (human)3e-08testosterone measurementserum testosterone level (CMO:0000568)672316107231611Human
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
597268890GWAS1364964_Htype 2 diabetes mellitus QTL GWAS1364964 (human)4e-26type 2 diabetes mellitus672316107231611Human
596951312GWAS1070831_Hsex hormone-binding globulin measurement QTL GWAS1070831 (human)2e-10sex hormone-binding globulin measurement672316107231611Human
597598745GWAS1655605_HHbA1c measurement QTL GWAS1655605 (human)6e-14HbA1c measurementblood hemoglobin A1c level (CMO:0002786)672316107231611Human
597189663GWAS1285737_Hfree androgen index QTL GWAS1285737 (human)4e-08free androgen index672316107231611Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
406937416GWAS586392_Hheel bone mineral density QTL GWAS586392 (human)8e-36heel bone mineral densitybone mineral density (CMO:0001226)672316107231611Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human
597075997GWAS1172071_Hheel bone mineral density QTL GWAS1172071 (human)6e-09heel bone mineral densitybone mineral density (CMO:0001226)672316107231611Human

1 to 10 of 71 rows


1 to 20 of 69 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1194442_H GCST90012109 Sex hormone-binding globulin levels 180,726 European ancestry men G 0.884644 1E-15 15 rs9379084 0.0153264 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:32042192
GWAS1119135_H GCST004988 Breast cancer 76,192 European ancestry cases, 63,082 European ancestry controls A 0.1206 0.000003 5.523 rs9379084 0.0486 breast carcinoma (EFO:0000305)
 PMID:29059683
GWAS1638175_H GCST90492734 Type 2 diabetes 50,251 African American cases, 103,909 African American controls, 88,109 East Asian ancestry cases, 339,395 East Asian ancestry controls, 242,283 European ancestry cases, 1,569,734 European ancestry controls, 29,375 Hispanic cases, 59,368 Hispanic controls, 1,602 South African ancestry cases, 976 South African ancestry controls, 16,832 South Asian ancestry cases, 33,767 South Asian ancestry controls G 0.87617 7E-56 55.155 rs9379084 N/A PMID:38374256
GWAS1645697_H GCST90479626 Glucose (fasting status unknown, mean, inv-norm transformed) 118,233 African American or Afro-Caribbean individuals, 57,284 Hispanic or Latin American individuals, 6,317 East Asian ancestry individuals, 419,946 European ancestry individuals G 0.8905 1E-19 19 rs9379084 0.04461 glucose measurement (EFO:0004468)
 PMID:39024449
GWAS1129678_H GCST006979 Heel bone mineral density 426,824 British ancestry individuals G 0.895148 1E-30 30 rs9379084 0.0340199 heel bone mineral density (EFO:0009270)
 PMID:30598549
GWAS1708715_H GCST008163 Height 1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals A 0.1228 1E-7 7 rs9379084 0.0569 body height (OBA:VT0001253)
 PMID:28552196
GWAS1132453_H GCST009379 Type 2 diabetes 74,124 European ancestry cases, 824,006 European ancestry controls G 0.8873 3E-21 20.523 rs9379084 1.11 PMID:30297969
GWAS586392_H GCST007066 Heel bone mineral density approximately 446,000 European ancestry individuals ? NR 8E-36 35.097 rs9379084 N/A heel bone mineral density (EFO:0009270)
 PMID:30595370
GWAS1154042_H GCST007077 Type 2 diabetes approximately 459,000 European ancestry individuals ? NR 2E-15 14.699 rs9379084 N/A PMID:30595370
GWAS1715114_H GCST007841 Height approximately 458,000 European ancestry individuals ? NR 4E-65 64.398 rs9379084 N/A body height (OBA:VT0001253)
 PMID:30595370
GWAS1655605_H GCST90479502 Hemoglobin A1c (HbA1c, minimum, inv-norm transformed) 98,578 African American or Afro-Caribbean individuals, 49,152 Hispanic or Latin American individuals, 5,466 East Asian ancestry individuals, 338,640 European ancestry individuals G 0.8915 6E-14 13.222 rs9379084 0.0409 HbA1c measurement (EFO:0004541)
 PMID:39024449
GWAS1655765_H GCST90479501 Hemoglobin A1c (HbA1c, mean, inv-norm transformed) 98,735 African American or Afro-Caribbean individuals, 49,225 Hispanic or Latin American individuals, 5,475 East Asian ancestry individuals, 338,848 European ancestry individuals G 0.8916 1E-14 14 rs9379084 0.04331 HbA1c measurement (EFO:0004541)
 PMID:39024449
GWAS1655958_H GCST90479500 Hemoglobin A1c (HbA1c, maximum, inv-norm transformed) 98,772 African American or Afro-Caribbean individuals, 49,229 Hispanic or Latin American individuals, 5,477 East Asian ancestry individuals, 338,857 European ancestry individuals G 0.8916 2E-14 13.699 rs9379084 0.04196 HbA1c measurement (EFO:0004541)
 PMID:39024449
GWAS1171764_H GCST006288 Heel bone mineral density 76,067 European ancestry women, 66,420 European ancestry men G 0.882997 3E-15 14.523 rs9379084 0.0413825 heel bone mineral density (EFO:0009270)
 PMID:28869591
GWAS1172071_H GCST006288 Heel bone mineral density 76,067 European ancestry women, 66,420 European ancestry men G 0.883136 6E-9 8.222 rs9379084 0.0410614 heel bone mineral density (EFO:0009270)
 PMID:28869591
GWAS1172225_H GCST006288 Heel bone mineral density 76,067 European ancestry women, 66,420 European ancestry men G 0.882837 4E-7 6.398 rs9379084 0.0397905 heel bone mineral density (EFO:0009270)
 PMID:28869591
GWAS1178741_H GCST010118 Type 2 diabetes 77,418 East Asian cases, 356,122 East Asian controls G 0.799 2E-14 13.699 rs9379084 1.07 PMID:32499647
GWAS1181203_H GCST010557 Type 2 diabetes 148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls G 0.843 5E-31 30.302 rs9379084 0.0715 PMID:32541925
GWAS1183419_H GCST010555 Type 2 diabetes 148,726 European ancestry cases, 965,732 European ancestry controls G 0.8803 4E-22 21.398 rs9379084 0.0747 PMID:32541925
GWAS1724978_H GCST008839 Height 159,095 Japanese ancestry individuals ? NR 8E-30 29.097 rs9379084 0.03771175 body height (OBA:VT0001253)
 PMID:31562340
1 to 20 of 69 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90012109 GWAS Catalog

Note Type Note Reference