GWAS1078913_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1078913_H (glomerular filtration rate QTL GWAS1078913 (human)) Homo sapiens

Symbol: GWAS1078913_H
Name: glomerular filtration rate QTL GWAS1078913 (human)
RGD ID: 596959394
Trait: glomerular filtration rate
LOD Score: Not Available
P Value: 1.0E-40
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3867,109,432 - 7,109,433RGD_MAPPER_PIPELINEGRCh38
GRCh3767,109,665 - 7,109,666RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1322078RREB1ras responsive element binding protein 1671077437251980Human


Peak: (rs3904600)
Human AssemblyChrPosition (strand)Source
GRCh3867,109,432 - 7,109,433RGD_MAPPER_PIPELINE


1 to 10 of 25 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
596959120GWAS1078639_Hglomerular filtration rate QTL GWAS1078639 (human)5e-35glomerular filtration rate671094327109433Human
597608474GWAS1665334_Hgout QTL GWAS1665334 (human)5e-27gout671094327109433Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human
596960095GWAS1079614_Hglomerular filtration rate QTL GWAS1079614 (human)5e-53glomerular filtration rate671094327109433Human
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human
597108165GWAS1204239_Hurate measurement QTL GWAS1204239 (human)5e-18urate measurementblood uric acid level (CMO:0000501)671094327109433Human
597218703GWAS1314777_HBMI-adjusted waist-hip ratio QTL GWAS1314777 (human)1e-13body size trait (VT:0100005)671094327109433Human
597247813GWAS1343887_HBMI-adjusted waist-hip ratio QTL GWAS1343887 (human)8e-14body size trait (VT:0100005)671094327109433Human

1 to 10 of 25 rows


1 to 14 of 14 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1126402_H GCST007038 Balding type 1 approximately 208,000 European ancestry individuals ? NR 2E-14 13.699 rs3904600 N/A balding measurement (EFO:0007825)
 PMID:30595370
GWAS1662462_H GCST90479931 Gout (PheCode 274.1) 14,437 African American or Afro-Caribbean cases, 103,731 African American or Afro-Caribbean controls, 3,643 Hispanic or Latin American cases, 55,120 Hispanic or Latin American controls, 1,243 East Asian ancestry cases, 5,416 East Asian ancestry controls, 42,034 European ancestry cases, 397,989 European ancestry controls C 0.482 9E-30 29.046 rs3904600 0.08519 gout (EFO:0004274)
 PMID:39024449
GWAS1664861_H GCST90476379 Gout (PheCode 274.1) 31,493 European ancestry cases, 284,175 European ancestry controls C 0.3767 9E-28 27.046 rs3904600 0.09181 gout (EFO:0004274)
 PMID:39024449
GWAS1665334_H GCST90479934 Gout and other crystal arthrop (PheCode 274) 14,867 African American or Afro-Caribbean cases, 102,953 African American or Afro-Caribbean controls, 3,900 Hispanic or Latin American cases, 54,594 Hispanic or Latin American controls, 1,256 East Asian ancestry cases, 5,386 East Asian ancestry controls, 44,197 European ancestry cases, 393,782 European ancestry controls C 0.4821 5E-27 26.302 rs3904600 0.08069 gout (EFO:0004274)
 PMID:39024449
GWAS1204239_H GCST008973 Urate levels 174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women C 0.5961 5E-18 17.302 rs3904600 0.0569 urate measurement (EFO:0004531)
 PMID:31578528
GWAS1205053_H GCST008973 Urate levels 174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women C 0.6187 2E-21 20.699 rs3904600 0.054 urate measurement (EFO:0004531)
 PMID:31578528
GWAS761229_H GCST007067 Waist-hip ratio approximately 458,000 European ancestry individuals ? NR 6E-22 21.222 rs3904600 N/A waist-hip ratio (EFO:0004343)
 PMID:30595370
GWAS1303608_H GCST008972 Urate levels 288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals C 0.4047 5E-51 50.302 rs3904600 0.0573 urate measurement (EFO:0004531)
 PMID:31578528
GWAS1314777_H GCST012230 Waist-to-hip ratio adjusted for BMI 186,825 British ancestry men C NR 1E-13 13 rs3904600 0.0240717 BMI-adjusted waist-hip ratio (EFO:0007788)
 PMID:34021172
GWAS1343887_H GCST012228 Waist-hip index 186,825 British ancestry men C NR 8E-14 13.097 rs3904600 0.0241952 BMI-adjusted waist-hip ratio (EFO:0007788)
 PMID:34021172
GWAS1409787_H GCST90095131 Vertex-wise cortical thickness 33,748 European ancestry individuals C 0.37 2E-16 15.699 rs3904600 8.21 cortical thickness (EFO:0004840)
 PMID:34910505
GWAS1804494_H GCST90428448 Estimated glomerular filtration rate (cystatin c) 406,504 European ancestry individuals G NR 1E-40 40 rs3904600 0.0281582 glomerular filtration rate (OBA:0003747)
 PMID:39256582
GWAS1807383_H GCST90428446 Estimated glomerular filtration rate (creatinine, cystatin c) 406,504 European ancestry individuals G NR 5E-53 52.302 rs3904600 0.032573 glomerular filtration rate (OBA:0003747)
 PMID:39256582
GWAS1807448_H GCST90428447 Estimated glomerular filtration rate (creatinine) 406,504 European ancestry individuals G NR 5E-35 34.302 rs3904600 0.0266998 glomerular filtration rate (OBA:0003747)
 PMID:39256582
1 to 14 of 14 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90428448 GWAS Catalog

Note Type Note Reference