GWAS1598775_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1598775_H (information processing speed, response to cranial radiation therapy QTL GWAS1598775 (human)) Homo sapiens

Symbol: GWAS1598775_H
Name: information processing speed, response to cranial radiation therapy QTL GWAS1598775 (human)
RGD ID: 597502701
Trait: information processing speed, response to cranial radiation therapy
LOD Score: Not Available
P Value: 4.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3865,095,798 - 5,095,799RGD_MAPPER_PIPELINEGRCh38
GRCh3765,096,032 - 5,096,033RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1598775_HHumaninformation processing speed  IAGPrs4960065405850206 GWAS_CATALOGPMID:37038335
GWAS1598775_HHumanresponse to cranial radiation therapy  IAGPrs4960065405850206 GWAS_CATALOGPMID:37038335

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
10402643LYRM4-AS1LYRM4 antisense RNA 1650038165240496Human
1345825LYRM4LYR motif containing 4650317535260950Human


Peak: (rs4960065)
Human AssemblyChrPosition (strand)Source
GRCh3865,095,798 - 5,095,799RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597502701GWAS1598775_Hinformation processing speed, response to cranial radiation therapy QTL GWAS1598775 (human)0.0000004information processing speed, response to cranial radiation therapy650957985095799Human
2289408BW324_HBody weight QTL 324 (human)3.150.0001Body fat amount6120803913Human
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
2289435BMD4_HBone mineral density QTL 4 (human)3.150.0001Bone mineral density6120803913Human
2292824PRSTS5_HProstate tumor susceptibility QTL 5 (human)Prostate tumor susceptibility6119232373Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human
1643495BW291_HBody Weight QTL 291 (human)2.13Body weightBMI6119321359Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1598775_H GCST90277986 Change in processing speed in pediatric CNS tumors treated with craniospinal irradiation 133 European ancestry individuals G NR 4E-7 6.398 rs4960065 5.351 information processing speed (EFO:0004363)
response to cranial radiation therapy (EFO:0010950)
 PMID:37038335
Database
Acc Id
Source(s)
GWAS Catalog GCST90277986 GWAS Catalog

Note Type Note Reference