GWAS626227_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS626227_H (reticulocyte count QTL GWAS626227 (human)) Homo sapiens

Symbol: GWAS626227_H
Name: reticulocyte count QTL GWAS626227 (human)
RGD ID: 406977251
Trait: reticulocyte quantity   (VT:0003135)    
Measurement Type: total reticulocyte count   (CMO:0003020)    
LOD Score: Not Available
P Value: 7.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3867,157,433 - 7,157,434RGD_MAPPER_PIPELINEGRCh38
GRCh3767,157,666 - 7,157,667RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS626227_HHumantotal reticulocyte count  IAGPrs57996771405850206Based on the EFO term IDGWAS_CATALOGPMID:27863252

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS626227_HHumanreticulocyte quantity  IAGPrs57996771405850206Based on the EFO term IDGWAS_CATALOGPMID:27863252

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS626227_HHumanreticulocyte count  IAGPrs57996771405850206 GWAS_CATALOGPMID:27863252

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1322078RREB1ras responsive element binding protein 1671077437251980Human


Peak: (rs57996771)
Human AssemblyChrPosition (strand)Source
GRCh3867,157,433 - 7,157,434RGD_MAPPER_PIPELINE


1 to 10 of 15 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289408BW324_HBody weight QTL 324 (human)3.150.0001Body fat amount6120803913Human
406977251GWAS626227_Hreticulocyte count QTL GWAS626227 (human)7e-11reticulocyte quantity (VT:0003135)total reticulocyte count (CMO:0003020)671574337157434Human
406960195GWAS609171_Hreticulocyte count QTL GWAS609171 (human)5e-09reticulocyte quantity (VT:0003135)total reticulocyte count (CMO:0003020)671574337157434Human
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
406964965GWAS613941_Hreticulocyte count QTL GWAS613941 (human)4e-11reticulocyte quantity (VT:0003135)total reticulocyte count (CMO:0003020)671574337157434Human
1643377BW325_HBody weight QTL 325 (human)2.320.0005Body fat amount6691196032911960Human
1643569GLUCO21_HGlucose level QTL 21 (human)0.021Glucose levelnon-insulin-dependent6691196032911960Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human

1 to 10 of 15 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS626227_H GCST004619 Reticulocyte fraction of red cells 170,690 European ancestry individuals C 0.1693 7E-11 10.155 rs57996771 0.03274342 reticulocyte count (EFO:0007986)
 PMID:27863252
GWAS609171_H GCST004611 High light scatter reticulocyte count 170,761 European ancestry individuals C 0.1693 5E-9 8.302 rs57996771 0.02934395 reticulocyte count (EFO:0007986)
 PMID:27863252
GWAS613941_H GCST004622 Reticulocyte count 170,641 European ancestry individuals C 0.1693 4E-11 10.398 rs57996771 0.03306844 reticulocyte count (EFO:0007986)
 PMID:27863252
GWAS643680_H GCST90002386 High light scatter reticulocyte percentage of red cells 408,112 British individuals C 0.167733 3E-11 10.523 rs57996771 0.020836024 reticulocyte measurement (EFO:0010700)
 PMID:32888494
Database
Acc Id
Source(s)
GWAS Catalog GCST004619 GWAS Catalog

Note Type Note Reference