GWAS1667504_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1667504_H (monocyte count QTL GWAS1667504 (human)) Homo sapiens

Symbol: GWAS1667504_H
Name: monocyte count QTL GWAS1667504 (human)
RGD ID: 597610644
Trait: monocyte quantity   (VT:0000223)    
Measurement Type: blood monocyte count   (CMO:0000032)    
LOD Score: Not Available
P Value: 2.0E-17
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3867,136,539 - 7,136,540RGD_MAPPER_PIPELINEGRCh38
GRCh3767,136,772 - 7,136,773RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1667504_HHumanblood monocyte count  IAGPrs551143405850206 GWAS_CATALOGPMID:39024449

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1667504_HHumanmonocyte quantity  IAGPrs551143405850206 GWAS_CATALOGPMID:39024449

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1667504_HHumanmonocyte count  IAGPrs551143405850206 GWAS_CATALOGPMID:39024449

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1322078RREB1ras responsive element binding protein 1671077437251980Human


Peak: (rs551143)
Human AssemblyChrPosition (strand)Source
GRCh3867,136,539 - 7,136,540RGD_MAPPER_PIPELINE


1 to 10 of 13 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289408BW324_HBody weight QTL 324 (human)3.150.0001Body fat amount6120803913Human
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
1643377BW325_HBody weight QTL 325 (human)2.320.0005Body fat amount6691196032911960Human
1643569GLUCO21_HGlucose level QTL 21 (human)0.021Glucose levelnon-insulin-dependent6691196032911960Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
597611063GWAS1667923_Hneutrophil count QTL GWAS1667923 (human)1e-12neutrophil quantity (VT:0000222)blood neutrophil count (CMO:0000030)671365397136540Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human
597610644GWAS1667504_Hmonocyte count QTL GWAS1667504 (human)2e-17monocyte quantity (VT:0000223)blood monocyte count (CMO:0000032)671365397136540Human
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human
2289435BMD4_HBone mineral density QTL 4 (human)3.150.0001Bone mineral density6120803913Human

1 to 10 of 13 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1667504_H GCST90479703 monocyte (absolute count, minimum, inv-norm transformed) 73,142 African American or Afro-Caribbean individuals, 37,368 Hispanic or Latin American individuals, 3,879 East Asian ancestry individuals, 259,625 European ancestry individuals A 0.3031 2E-17 16.699 rs551143 0.02908 monocyte count (EFO:0005091)
 PMID:39024449
GWAS1667923_H GCST90479712 neutrophil (absolute count, minimum, inv-norm transformed) 74,049 African American or Afro-Caribbean individuals, 37,043 Hispanic or Latin American individuals, 3,003 East Asian ancestry individuals, 275,068 European ancestry individuals A 0.2997 1E-12 12 rs551143 0.02385 neutrophil count (EFO:0004833)
 PMID:39024449
GWAS1760213_H GCST90476457 white blood cell count (WBC, minimum, inv-norm transformed) 381,267 European ancestry individuals A 0.25 5E-27 26.302 rs551143 0.03475 leukocyte quantity (OBA:VT0000217)
 PMID:39024449
Database
Acc Id
Source(s)
GWAS Catalog GCST90479703 GWAS Catalog

Note Type Note Reference