Symbol:
LINC02533
Name:
long intergenic non-protein coding RNA 2533
RGD ID:
12910410
HGNC Page
HGNC:53566
Description:
INTERACTS WITH aflatoxin B1; cadmium atom; sodium arsenite
Type:
ncrna (Ensembl: lncRNA)
RefSeq Status:
VALIDATED
Allele / Splice:
See ClinVar data
Latest Assembly:
GRCh38 - Human Genome Assembly GRCh38
Position:
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 6 4,488,798 - 4,495,771 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 6 4,488,720 - 4,509,528 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 6 4,489,032 - 4,496,005 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Cytogenetic Map 6 p25.1 NCBI CHM1_1 6 4,490,590 - 4,498,642 (+) NCBI CHM1_1 T2T-CHM13v2.0 6 4,357,719 - 4,364,687 (+) NCBI T2T-CHM13v2.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
.
Predicted Target Of
Count of predictions: 163 Count of miRNA genes: 153 Interacting mature miRNAs: 162 Transcripts: ENST00000563079 Prediction methods: Miranda, Rnahybrid Result types: miRGate_prediction
2289408 BW324_H Body weight QTL 324 (human) 3.15 0.0001 Body fat amount 6 1 20803913 Human 1643418 BW282_H Body Weight QTL 282 (human) 2.07 0.001 Body weight 6 1 19321359 Human 2289435 BMD4_H Bone mineral density QTL 4 (human) 3.15 0.0001 Bone mineral density 6 1 20803913 Human 2292824 PRSTS5_H Prostate tumor susceptibility QTL 5 (human) Prostate tumor susceptibility 6 1 19232373 Human 2289320 BW390_H Body weight QTL 390 (human) 2.13 Body weight BMI 6 1 19321359 Human 1643495 BW291_H Body Weight QTL 291 (human) 2.13 Body weight BMI 6 1 19321359 Human
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
alimentary part of gastrointestinal system
entire extraembryonic component
614
1060
1456
1159
2565
797
1240
4
228
586
138
1281
3100
2848
47
1806
391
1068
945
100
Too many to show, limit is 500. Download them if you would like to view them all.
Ensembl Acc Id:
ENST00000563079
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 4,491,803 - 4,495,769 (+) Ensembl
Ensembl Acc Id:
ENST00000673975
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 4,491,807 - 4,495,769 (+) Ensembl
Ensembl Acc Id:
ENST00000674020
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 4,488,744 - 4,494,613 (+) Ensembl
Ensembl Acc Id:
ENST00000827245
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 4,489,832 - 4,509,528 (+) Ensembl
Ensembl Acc Id:
ENST00000827246
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 4,489,834 - 4,509,521 (+) Ensembl
Ensembl Acc Id:
ENST00000827247
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 4,488,745 - 4,494,793 (+) Ensembl
Ensembl Acc Id:
ENST00000827248
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 4,488,793 - 4,494,793 (+) Ensembl
Ensembl Acc Id:
ENST00000827249
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 4,488,720 - 4,494,613 (+) Ensembl
Ensembl Acc Id:
ENST00000827250
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 4,488,763 - 4,494,614 (+) Ensembl
Ensembl Acc Id:
ENST00000827251
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 4,488,762 - 4,494,613 (+) Ensembl
Ensembl Acc Id:
ENST00000827252
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 4,488,762 - 4,494,613 (+) Ensembl
Ensembl Acc Id:
ENST00000827253
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 4,488,774 - 4,494,616 (+) Ensembl
Ensembl Acc Id:
ENST00000827254
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 4,488,778 - 4,494,614 (+) Ensembl
Ensembl Acc Id:
ENST00000827255
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 4,488,778 - 4,494,613 (+) Ensembl
Ensembl Acc Id:
ENST00000827256
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 4,488,778 - 4,494,613 (+) Ensembl
Ensembl Acc Id:
ENST00000827257
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 4,488,795 - 4,494,613 (+) Ensembl
Ensembl Acc Id:
ENST00000827258
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 4,488,795 - 4,494,613 (+) Ensembl
Ensembl Acc Id:
ENST00000827259
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 4,488,795 - 4,494,613 (+) Ensembl
Ensembl Acc Id:
ENST00000827260
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 4,488,795 - 4,494,613 (+) Ensembl
Ensembl Acc Id:
ENST00000827261
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 4,488,798 - 4,494,613 (+) Ensembl
Ensembl Acc Id:
ENST00000827262
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 4,489,802 - 4,495,245 (+) Ensembl
Ensembl Acc Id:
ENST00000827263
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 4,489,823 - 4,495,245 (+) Ensembl
Ensembl Acc Id:
ENST00000827264
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 4,489,788 - 4,494,614 (+) Ensembl
Ensembl Acc Id:
ENST00000827265
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 4,489,806 - 4,494,614 (+) Ensembl
Ensembl Acc Id:
ENST00000827266
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 4,489,806 - 4,494,614 (+) Ensembl
Ensembl Acc Id:
ENST00000827267
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 4,489,808 - 4,494,614 (+) Ensembl
Ensembl Acc Id:
ENST00000827268
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 4,489,808 - 4,494,614 (+) Ensembl
Ensembl Acc Id:
ENST00000827269
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 4,489,820 - 4,494,613 (+) Ensembl
Ensembl Acc Id:
ENST00000827270
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 4,490,291 - 4,494,613 (+) Ensembl
Ensembl Acc Id:
ENST00000827271
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 4,490,291 - 4,494,613 (+) Ensembl
Ensembl Acc Id:
ENST00000827272
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 4,490,291 - 4,494,613 (+) Ensembl
Ensembl Acc Id:
ENST00000827273
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 4,489,806 - 4,490,863 (+) Ensembl
Ensembl Acc Id:
ENST00000827274
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 4,488,829 - 4,489,609 (+) Ensembl
RefSeq Acc Id:
NR_149117
RefSeq Status:
VALIDATED
Type:
NON-CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38 6 4,488,798 - 4,495,771 (+) NCBI T2T-CHM13v2.0 6 4,357,719 - 4,364,687 (+) NCBI
Sequence:
ACAATTTTAGGGTGCAGTAAAGGCAGAAAGGATAGTTGCAGAGTAGGGAATAGATGTGAGTTATAGATTAGGACTGATGGGAAGATTGTTTACCATAATTAGAGGCAAGGGGGCATAAAGAACGAGGA AGTTACTCTTTGAAAATAGAGAACAAAGAACAAGGAAGCTGAACAAGCTGACTCTTCTTTGAAGAGGAACCCACCGTACCCAACACCAGAAAGACTATAACCTTGCTTTGAAGGCTGGGAGTCCAAGA TCCAGGTGTCAGCAGTGTTGGTATCTCCTGTGGCCACTCTCCTGGGCTTGCAGACGGCGTCTTCTCCCTGTGTCCCCACATGACCACCCTTCTCCACCTTAGCATCCCCGGTGTCTCTGTGTGTCCGG ATGTCCTTTTCTCATGAGGGAAGTGAACTTGACATGGTTTAGCAACCAAATAAAGCCATACGTCACTGCTGCTCTTTGAAGATAATGAAATCTGGCATCGAGATCTTTATCTTTGCAGGAACCAAAGG CCAGAGACTTCTCAGCAAACACAAGACCAGAGAGAGAAGCATCCCTGCTGATGAGAAAGAACAGACACTCCCAGAGGACAAGGTCCACCTGTCAGGCAGCCACAGCCCAGCATACTCTGGAGTCTGAG GTGGGGGTCAGTTGTGAAGAAAGGGAAGAAGGAAGAAAAAGGATACGTTGTGCTCCGACCACAGGCCAAGGTCAGAAGACGGTATTTACCAAGTCTCTTCCCAAAATACTTGCAAATGCACATAATCT CAAAGTGTTTTTGAGGGCTCTTCCGATCTAAAATTGGTCCTAGTGACAAGGGGTGTTTGGGGAAATCAAAGGGCTGGCTTAACTATGTAGACCTAGGTCTGGTCTTATTTCTGGCCCATACGATCATC ATGACCTTGGACAAATGAAACTTCCTGGGCCTCAAGTTCCTTGTATCAGAAAGGATGGCATTCAGCTGCGTACAACAGAAAACCAAATCACAGTGGCTTATCCAAGAAAAGTTCAATTTTTCTCAAAA CTACAGCGTCCTGGGCTGATGCGGCAGCCCCAGGACGACCTCAGCATCTCACTCCTCCTTTCTTTACTCGGCCCCATCCTCAGGCTGTGACTTTCATCCTCAGGTTTGTCATCTTTTGGTGGTAAGAT GGTTGCTCTACCTCAAGCTCACAAAAAGAAATGGGGGAAAGCAGGAAAGAAGAAAATCTGCTTCCCCAGAGACTCTGAGGCTGCACTTGCACATCTTATGGATCCAAACTGTGTCCCATGGCTGCCCC TAGATGCAAGGGGCCTGGGGAAATGAGCGGATTCATCAGGTACACTGCAACCGTACATGAAAGGAAAGTTCTGTCAATAAAGAAGAGCGAAATCTACATTTGGTCAGGAAACAGCATTGCCTGCAATA TGCCTCATATGAAATAAAGCCTTTCTTGCCCCCATTCTGCTACTCGGTCATTCTTGCACTCAACAAATAGATGTTGAGTGCCCACTCTCTCCAGGCCATGTTCTAGGTGCTGCGGATGCAATCCTGAA TCTATGAACACGATTGGCAGAACAATAAATATTGATTGTCTTGGCCACTCACCAAATAAAGTGCTCCTGGGAAGGCTGAGATCTAATGCAAAGCAGCAGCTTGACTTTCTCACTCCCTGGCAACAATG CCAAGCAAGAGAAAGCGATGGGTAAGGCCTGGCTCAAGAGTCTCACTGCAACCTGCACTGTAGATTCTACCTGCTAATTTCCTCAGCCTTCTCTGGTTTTGGGCTTCAGAATGCCCTAACTCTGGGCC CGGCGCGGTGGCTCACGCCTGTAAACCCATCACTTTGGGAGGCCAAGGCGGGTGGATCACAAGATCAAGACCATCCTGGCCAACATGGTGAAACCCTGTCTCTACTGAAAATACAAAAATTAGCTGGG CATGGTGGCTTGTGCTTGTAATCCAGCTACTTGGAAGGCTGAGGCTGGAGGATCGCTTGAACCCAGAAGGCAGAGGTTGCAGTGAGCTGAGATCACACCACTGCACTCCAGCCTGGCAACAGAGTGAG ACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAGAATGCCCTAAGTCTACTCTGGACCATGAGCAAGGATAATCTGTCTTAGAGGAGAGAAGGTGAGGTTATGATTCCAGAGCATTTGGTGACCCAGG AAGTAGACCTGCCTCCTCCTATCTGTCCACAGAGCAGTCCTAGGGGCAATAGGCCATGAGAAGATCATGCCAGGCAGTCCATTTCTATATTACCATGTAAACAAAAACTCAGCTGTGAACCCTGGAAC GTTCGTATTCTGCAGCTGCCAGTGTAAACTGGTACAGGCCTCTTGAAGAACAGTGGGGAAAGGCACTCTGAAAGCATCCACGCCTCCATACCTGCTGATCCAGGGCTCTGATTTTCCTTCTGGGAACC AAGCCTAGGAGAATGATTCAAGCTGCAGAAAACCTTTCTCCACTAAGATGTTTGCTGTGGCATTCAGTATAATAGCACACCAGAGAAACAATCTAAAGATTCATCAGTAGGAGAATATCTAAGTAAAT TATGGTACATACACTCAATAAAATGTTATATGACTACTAA
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