Advanced Search (OLGA)

Symbol:

GWAS1123581_H

Name:

mean arterial pressure QTL GWAS1123581 (human)

RGD ID:

597027507

Trait:

mean arterial pressure

Measurement Type:

mean arterial blood pressure (CMO:0000009)

LOD Score:

Not Available

P Value:

2.0E-8

Variance:

Not Available

Position

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh38	6	1,620,807 - 1,620,808	RGD_MAPPER_PIPELINE	GRCh38
GRCh37	6	1,621,042 - 1,621,043	RGD_MAPPER_PIPELINE	GRCh37

Population Stats:

Not Available

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Clinical Measurement

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
GWAS1123581_H	Human	mean arterial blood pressure		IAGP	rs12209106	405850206		GWAS_CATALOG	PMID:30487518

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
GWAS1123581_H	Human	mean arterial pressure		IAGP	rs12209106	405850206		GWAS_CATALOG	PMID:30487518

#	Reference Title	Reference Citation
1.	RGD GWAS Catalog Import Pipeline	RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Human Assembly	Chr	Position (strand)	Source
GRCh38	6	1,620,807 - 1,620,808	RGD_MAPPER_PIPELINE

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2289408	BW324_H	Body weight QTL 324 (human)	3.15	0.0001	Body fat amount		6	1	20803913	Human
1643418	BW282_H	Body Weight QTL 282 (human)	2.07	0.001	Body weight		6	1	19321359	Human
597027507	GWAS1123581_H	mean arterial pressure QTL GWAS1123581 (human)		2e-08	mean arterial pressure	mean arterial blood pressure (CMO:0000009)	6	1620807	1620808	Human
597027122	GWAS1123196_H	diastolic blood pressure QTL GWAS1123196 (human)		6e-09	diastolic blood pressure	diastolic blood pressure (CMO:0000005)	6	1620807	1620808	Human
2289435	BMD4_H	Bone mineral density QTL 4 (human)	3.15	0.0001	Bone mineral density		6	1	20803913	Human
2292824	PRSTS5_H	Prostate tumor susceptibility QTL 5 (human)			Prostate tumor susceptibility		6	1	19232373	Human
2289320	BW390_H	Body weight QTL 390 (human)	2.13		Body weight	BMI	6	1	19321359	Human
597027246	GWAS1123320_H	systolic blood pressure QTL GWAS1123320 (human)		0.000004	systolic blood pressure	systolic blood pressure (CMO:0000004)	6	1620807	1620808	Human
1643495	BW291_H	Body Weight QTL 291 (human)	2.13		Body weight	BMI	6	1	19321359	Human

Data has come from the GWAS Catalog		Download
The highlighted row represents the current QTL

QTL	GWAS Catalog Study	Disease Trait	Study Size	Risk Allele	Risk Allele Frequency	P Value	P Value MLOG	Peak Marker	Reported Odds Ratio or Beta-coefficient	Ontology Accession	PubMed
GWAS1123581_H	GCST007706	Mean arterial pressure	130,777 Japanese ancestry individuals	T	0.6834	2E-8	7.699	rs12209106	0.3039	mean arterial pressure (EFO:0006340)	PMID:30487518
GWAS1123196_H	GCST007704	Diastolic blood pressure	130,777 Japanese ancestry individuals	T	0.6834	6E-9	8.222	rs12209106	0.2811	diastolic blood pressure (EFO:0006336)	PMID:30487518
GWAS1123320_H	GCST007703	Systolic blood pressure	130,777 Japanese ancestry individuals	T	0.6741	0.000004	5.398	rs12209106	0.3514	systolic blood pressure (EFO:0006335)	PMID:30487518

Database	Acc Id	Source(s)
GWAS Catalog	GCST007706	GWAS Catalog

Note Type	Note	Reference

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
		Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Send us a Message