GWAS1454818_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1454818_H (non-dense area measurement, mammographic density measurement QTL GWAS1454818 (human)) Homo sapiens

Symbol: GWAS1454818_H
Name: non-dense area measurement, mammographic density measurement QTL GWAS1454818 (human)
RGD ID: 597358744
Trait: non-dense area measurement, mammographic density measurement
LOD Score: Not Available
P Value: 1.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3866,751,826 - 6,751,827RGD_MAPPER_PIPELINEGRCh38
GRCh3766,752,059 - 6,752,060RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1454818_HHumanmammographic density measurement  IAGPrs1294438405850206 GWAS_CATALOGPMID:25342443
GWAS1454818_HHumannon-dense area measurement  IAGPrs1294438405850206 GWAS_CATALOGPMID:25342443

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
38645641LOC101928004uncharacterized LOC101928004666947926801171Human
155659906LOC127405255H3K4me1 hESC enhancer GRCh37_chr6:6751483-6752100667512506751867Human


Peak: (rs1294438)
Human AssemblyChrPosition (strand)Source
GRCh3866,751,826 - 6,751,827RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289408BW324_HBody weight QTL 324 (human)3.150.0001Body fat amount6120803913Human
597358744GWAS1454818_Hnon-dense area measurement, mammographic density measurement QTL GWAS1454818 (human)0.000001non-dense area measurement, mammographic density measurement667518266751827Human
597366825GWAS1462899_Hwaist-hip ratio QTL GWAS1462899 (human)2e-52waist-hip ratiowaist to hip ratio (WHR) (CMO:0000020)667518266751827Human
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
2289435BMD4_HBone mineral density QTL 4 (human)3.150.0001Bone mineral density6120803913Human
2292824PRSTS5_HProstate tumor susceptibility QTL 5 (human)Prostate tumor susceptibility6119232373Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human
1643495BW291_HBody Weight QTL 291 (human)2.13Body weightBMI6119321359Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1454818_H GCST002668 Mammographic density (non-dense area) 7,600 European ancestry individuals T 0.34 0.000001 6 rs1294438 N/A non-dense area measurement (EFO:0006504)
mammographic density measurement (EFO:0005941)
 PMID:25342443
GWAS1462899_H GCST007067 Waist-hip ratio approximately 458,000 European ancestry individuals ? NR 2E-52 51.699 rs1294438 N/A waist-hip ratio (EFO:0004343)
 PMID:30595370
Database
Acc Id
Source(s)
GWAS Catalog GCST002668 GWAS Catalog

Note Type Note Reference