GWAS1463105_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1463105_H (lymphocyte count QTL GWAS1463105 (human)) Homo sapiens

Symbol: GWAS1463105_H
Name: lymphocyte count QTL GWAS1463105 (human)
RGD ID: 597367031
Trait: lymphocyte count
Measurement Type: blood lymphocyte count   (CMO:0000031)    
LOD Score: Not Available
P Value: 7.0E-15
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38613,547,726 - 13,547,727RGD_MAPPER_PIPELINEGRCh38
GRCh37613,547,958 - 13,547,959RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1463105_HHumanblood lymphocyte count  IAGPrs2841572405850206 GWAS_CATALOGPMID:32888493

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1463105_HHumanlymphocyte count  IAGPrs2841572405850206 GWAS_CATALOGPMID:32888493

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
10412568RN7SKP204RN7SK pseudogene 20461354770413547956Human


Peak: (rs2841572)
Human AssemblyChrPosition (strand)Source
GRCh38613,547,726 - 13,547,727RGD_MAPPER_PIPELINE


1 to 10 of 13 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597367003GWAS1463077_Hlymphocyte count QTL GWAS1463077 (human)1e-16lymphocyte countblood lymphocyte count (CMO:0000031)61354772613547727Human
2289408BW324_HBody weight QTL 324 (human)3.150.0001Body fat amount6120803913Human
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
1643377BW325_HBody weight QTL 325 (human)2.320.0005Body fat amount6691196032911960Human
1643569GLUCO21_HGlucose level QTL 21 (human)0.021Glucose levelnon-insulin-dependent6691196032911960Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human
597367031GWAS1463105_Hlymphocyte count QTL GWAS1463105 (human)7e-15lymphocyte countblood lymphocyte count (CMO:0000031)61354772613547727Human
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human
2289435BMD4_HBone mineral density QTL 4 (human)3.150.0001Bone mineral density6120803913Human

1 to 10 of 13 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1463105_H GCST90002316 Lymphocyte count 524,923 European ancestry individuals T 0.68787 7E-15 14.155 rs2841572 0.016186 lymphocyte count (EFO:0004587)
 PMID:32888493
GWAS1463077_H GCST90002320 Lymphocyte count 643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals T 0.682158 1E-16 16 rs2841572 N/A lymphocyte count (EFO:0004587)
 PMID:32888493
Database
Acc Id
Source(s)
GWAS Catalog GCST90002316 GWAS Catalog

Note Type Note Reference