GWAS1651632_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS1651632_H (eosinophil count QTL GWAS1651632 (human)) Homo sapiens

Symbol: GWAS1651632_H
Name: eosinophil count QTL GWAS1651632 (human)
RGD ID: 597594772
Trait: eosinophil quantity   (VT:0002602)    
Measurement Type: blood eosinophil count   (CMO:0000033)    
LOD Score: Not Available
P Value: 7.0E-39
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386514,991 - 514,992RGD_MAPPER_PIPELINEGRCh38
GRCh376514,991 - 514,992RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1651632_HHumanblood eosinophil count  IAGPrs13192740405850206 GWAS_CATALOGPMID:39024449

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1651632_HHumaneosinophil quantity  IAGPrs13192740405850206 GWAS_CATALOGPMID:39024449

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1651632_HHumaneosinophil count  IAGPrs13192740405850206 GWAS_CATALOGPMID:39024449

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1348584EXOC2exocyst complex component 26485154693139Human


Peak: (rs13192740)
Human AssemblyChrPosition (strand)Source
GRCh386514,991 - 514,992RGD_MAPPER_PIPELINE


1 to 10 of 15 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597594526GWAS1651386_Heosinophil count QTL GWAS1651386 (human)1e-21eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)6514991514992Human
2289408BW324_HBody weight QTL 324 (human)3.150.0001Body fat amount6120803913Human
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
597596669GWAS1653529_Heosinophil count QTL GWAS1653529 (human)8e-49eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)6514991514992Human
597586522GWAS1643382_Heosinophil count QTL GWAS1643382 (human)1e-22eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)6514991514992Human
407094309GWAS743285_Hhair color QTL GWAS743285 (human)1e-09hair color6514991514992Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human
597594772GWAS1651632_Heosinophil count QTL GWAS1651632 (human)7e-39eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)6514991514992Human
597057858GWAS1153932_Heosinophil count QTL GWAS1153932 (human)1e-17eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)6514991514992Human
597596267GWAS1653127_Heosinophil count QTL GWAS1653127 (human)1e-38eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)6514991514992Human

1 to 10 of 15 rows


1 to 9 of 9 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1651632_H GCST90475297 eosinophil (fraction, maximum, inv-norm transformed) 335,542 European ancestry individuals C 0.4215 7E-39 38.155 rs13192740 0.03925 eosinophil count (EFO:0004842)
 PMID:39024449
GWAS1643382_H GCST90479602 eosinophil (absolute count, mean, inv-norm transformed) 90,448 African American or Afro-Caribbean individuals, 42,397 Hispanic or Latin American individuals, 3,996 East Asian ancestry individuals, 310,757 European ancestry individuals C 0.5155 1E-22 22 rs13192740 0.0335 eosinophil count (EFO:0004842)
 PMID:39024449
GWAS1643708_H GCST90479601 eosinophil (absolute count, maximum, inv-norm transformed) 90,403 African American or Afro-Caribbean individuals, 42,380 Hispanic or Latin American individuals, 3,995 East Asian ancestry individuals, 310,588 European ancestry individuals C 0.5155 1E-18 18 rs13192740 0.02928 eosinophil count (EFO:0004842)
 PMID:39024449
GWAS593320_H GCST90002382 Eosinophil percentage of white cells 408,112 British individuals T 0.602737 4E-14 13.398 rs13192740 0.019572299 eosinophil percentage of leukocytes (EFO:0007991)
 PMID:32888494
GWAS1651386_H GCST90475294 eosinophil (absolute count, minimum, inv-norm transformed) 310,849 European ancestry individuals C 0.422 1E-21 21 rs13192740 0.028 eosinophil count (EFO:0004842)
 PMID:39024449
GWAS1153932_H GCST90002381 Eosinophil counts 408,112 British individuals T 0.602738 1E-17 17 rs13192740 0.02232986 eosinophil count (EFO:0004842)
 PMID:32888494
GWAS1653127_H GCST90475288 eosinophil (absolute count, maximum, inv-norm transformed) 310,588 European ancestry individuals C 0.422 1E-38 38 rs13192740 0.04073 eosinophil count (EFO:0004842)
 PMID:39024449
GWAS1653529_H GCST90475291 eosinophil (absolute count, mean, inv-norm transformed) 310,757 European ancestry individuals C 0.422 8E-49 48.097 rs13192740 0.047 eosinophil count (EFO:0004842)
 PMID:39024449
GWAS743285_H GCST006989 Brown vs. black hair color 269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals C 0.3962 1E-9 9 rs13192740 1.09 hair color (EFO:0003924)
 PMID:30531825
1 to 9 of 9 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90475297 GWAS Catalog

Note Type Note Reference