GWAS1611857_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1611857_H (SARS-CoV-2 antibody measurement, response to COVID-19 vaccine QTL GWAS1611857 (human)) Homo sapiens

Symbol: GWAS1611857_H
Name: SARS-CoV-2 antibody measurement, response to COVID-19 vaccine QTL GWAS1611857 (human)
RGD ID: 597515783
Trait: SARS-CoV-2 antibody measurement, response to COVID-19 vaccine
Measurement Type: blood anti-SARS-CoV-2 antibody level   (CMO:0003966)    
LOD Score: Not Available
P Value: 2.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3869,943,012 - 9,943,013RGD_MAPPER_PIPELINEGRCh38
GRCh3769,943,245 - 9,943,246RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1611857_HHumanblood anti-SARS-CoV-2 antibody level  IAGPrs4716124405850206 GWAS_CATALOGPMID:37469131

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1611857_HHumanresponse to COVID-19 vaccine  IAGPrs4716124405850206 GWAS_CATALOGPMID:37469131
GWAS1611857_HHumanSARS-CoV-2 antibody measurement  IAGPrs4716124405850206 GWAS_CATALOGPMID:37469131
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1352821OFCC1orofacial cleft 1 candidate 1 (pseudogene)6970497810211608Human

Position Markers

Peak: (rs4716124)
Human AssemblyChrPosition (strand)Source
GRCh3869,943,012 - 9,943,013RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2289408BW324_HBody weight QTL 324 (human)3.150.0001Body fat amount6120803913Human
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
1643377BW325_HBody weight QTL 325 (human)2.320.0005Body fat amount6691196032911960Human
1643569GLUCO21_HGlucose level QTL 21 (human)0.021Glucose levelnon-insulin-dependent6691196032911960Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
2289435BMD4_HBone mineral density QTL 4 (human)3.150.0001Bone mineral density6120803913Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human
2292824PRSTS5_HProstate tumor susceptibility QTL 5 (human)Prostate tumor susceptibility6119232373Human
597515783GWAS1611857_HSARS-CoV-2 antibody measurement, response to COVID-19 vaccine QTL GWAS1611857 (human)0.000002SARS-CoV-2 antibody measurement, response to COVID-19 vaccineblood anti-SARS-CoV-2 antibody level (CMO:0003966)699430129943013Human
1643399BMD5_HBone mineral density QTL 5 (human)2.320.0005Bone mineral density6691196032911960Human
1643495BW291_HBody Weight QTL 291 (human)2.13Body weightBMI6119321359Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1611857_H GCST90256683 Response to BNT162b2 vaccine (percentage decrease of anti-SARS-CoV-2 Spike antibody levels from two to four months after first dose) 868 Italian ancestry individuals ? NR 0.000002 5.699 rs4716124 N/A SARS-CoV-2 antibody measurement (EFO:0803360)
response to COVID-19 vaccine (EFO:0803362)
 PMID:37469131
Database Acc Id Source(s)
GWAS Catalog GCST90256683 GWAS Catalog

RGD Curation Notes
Note Type Note Reference