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QTL: GWAS1413915_H (vaginal microbiome measurement QTL GWAS1413915 (human)) Homo sapiens

Symbol:

GWAS1413915_H

Name:

vaginal microbiome measurement QTL GWAS1413915 (human)

RGD ID:

597317841

Trait:

vaginal microbiome measurement

LOD Score:

Not Available

P Value:

3.0E-6

Variance:

Not Available

Position

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh38	6	9,559,154 - 9,559,155	RGD_MAPPER_PIPELINE	GRCh38
GRCh37	6	9,559,387 - 9,559,388	RGD_MAPPER_PIPELINE	GRCh37

Population Stats:

Not Available

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
GWAS1413915_H	Human	vaginal microbiome measurement		IAGP	rs2206555	405850206		GWAS_CATALOG	PMID:34282934

#	Reference Title	Reference Citation
1.	RGD GWAS Catalog Import Pipeline	RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Peak: (rs2206555)

Human Assembly	Chr	Position (strand)	Source
GRCh38	6	9,559,154 - 9,559,155	RGD_MAPPER_PIPELINE

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
597310138	GWAS1406212_H	vaginal microbiome measurement QTL GWAS1406212 (human)		0.000002	vaginal microbiome measurement		6	9559154	9559155	Human
2289408	BW324_H	Body weight QTL 324 (human)	3.15	0.0001	Body fat amount		6	1	20803913	Human
597311512	GWAS1407586_H	vaginal microbiome measurement QTL GWAS1407586 (human)		0.000006	vaginal microbiome measurement		6	9559154	9559155	Human
1643418	BW282_H	Body Weight QTL 282 (human)	2.07	0.001	Body weight		6	1	19321359	Human
597311709	GWAS1407783_H	vaginal microbiome measurement QTL GWAS1407783 (human)		0.000008	vaginal microbiome measurement		6	9559154	9559155	Human
1643377	BW325_H	Body weight QTL 325 (human)	2.32	0.0005	Body fat amount		6	6911960	32911960	Human
1643569	GLUCO21_H	Glucose level QTL 21 (human)		0.021	Glucose level	non-insulin-dependent	6	6911960	32911960	Human
1298458	BW9_H	Body weight QTL 9 (human)	2.7	0.0002	Body fat amount		6	6911960	32911960	Human
2289320	BW390_H	Body weight QTL 390 (human)	2.13		Body weight	BMI	6	1	19321359	Human
597317841	GWAS1413915_H	vaginal microbiome measurement QTL GWAS1413915 (human)		0.000003	vaginal microbiome measurement		6	9559154	9559155	Human
1358854	MULTSCL4_H	Multiple sclerosis susceptibility QTL 4 (human)			Multiple sclerosis susceptibility		6	6911960	32911960	Human
2289435	BMD4_H	Bone mineral density QTL 4 (human)	3.15	0.0001	Bone mineral density		6	1	20803913	Human
2292824	PRSTS5_H	Prostate tumor susceptibility QTL 5 (human)			Prostate tumor susceptibility		6	1	19232373	Human
1643495	BW291_H	Body Weight QTL 291 (human)	2.13		Body weight	BMI	6	1	19321359	Human
1643399	BMD5_H	Bone mineral density QTL 5 (human)	2.32	0.0005	Bone mineral density		6	6911960	32911960	Human

Data has come from the GWAS Catalog		Download
The highlighted row represents the current QTL

QTL	GWAS Catalog Study	Disease Trait	Study Size	Risk Allele	Risk Allele Frequency	P Value	P Value MLOG	Peak Marker	Reported Odds Ratio or Beta-coefficient	Ontology Accession	PubMed
GWAS1413915_H	GCST90026944	Vaginal microbiome MetaCyc pathway (PWY0-1298\|superpathway of pyrimidine deoxyribonucleosides degradation)	315 Chinese ancestry individuals	C	NR	0.000003	5.523	rs2206555	0.6537	vaginal microbiome measurement (EFO:0011013)	PMID:34282934
GWAS1406212_H	GCST90026823	Vaginal microbiome MetaCyc pathway (PWY-5695\|urate biosynthesis/inosine 5'-phosphate degradation)	315 Chinese ancestry individuals	C	NR	0.000002	5.699	rs2206555	0.6611	vaginal microbiome measurement (EFO:0011013)	PMID:34282934
GWAS1407586_H	GCST90026882	Vaginal microbiome MetaCyc pathway (PWY-6609\|adenine and adenosine salvage III)	315 Chinese ancestry individuals	C	NR	0.000006	5.222	rs2206555	0.6287	vaginal microbiome measurement (EFO:0011013)	PMID:34282934
GWAS1407783_H	GCST90026881	Vaginal microbiome MetaCyc pathway (PWY-6608\|guanosine nucleotides degradation III)	315 Chinese ancestry individuals	C	NR	0.000008	5.097	rs2206555	0.6256	vaginal microbiome measurement (EFO:0011013)	PMID:34282934

Database	Acc Id	Source(s)
GWAS Catalog	GCST90026944	GWAS Catalog

Note Type	Note	Reference

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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QTL: GWAS1413915_H (vaginal microbiome measurement QTL GWAS1413915 (human)) Homo sapiens