GWAS1209943_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1209943_H (intraocular pressure measurement QTL GWAS1209943 (human)) Homo sapiens

Symbol: GWAS1209943_H
Name: intraocular pressure measurement QTL GWAS1209943 (human)
RGD ID: 597113869
Trait: intraocular pressure measurement
LOD Score: Not Available
P Value: 3.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386597,203 - 597,204RGD_MAPPER_PIPELINEGRCh38
GRCh376597,203 - 597,204RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1209943_HHumanintraocular pressure measurement  IAGPrs113985657405850206 GWAS_CATALOGPMID:29617998

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1348584EXOC2exocyst complex component 26485154693139Human


Peak: (rs113985657)
Human AssemblyChrPosition (strand)Source
GRCh386597,203 - 597,204RGD_MAPPER_PIPELINE


1 to 10 of 11 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289408BW324_HBody weight QTL 324 (human)3.150.0001Body fat amount6120803913Human
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
597312942GWAS1409016_HAntiglaucoma preparations and miotics use measurement QTL GWAS1409016 (human)1e-10Antiglaucoma preparations and miotics use measurement6597203597204Human
597049121GWAS1145195_Hintraocular pressure measurement QTL GWAS1145195 (human)1e-15intraocular pressure measurement6597203597204Human
2289435BMD4_HBone mineral density QTL 4 (human)3.150.0001Bone mineral density6120803913Human
597042607GWAS1138681_Hintraocular pressure measurement QTL GWAS1138681 (human)5e-10intraocular pressure measurement6597203597204Human
2292824PRSTS5_HProstate tumor susceptibility QTL 5 (human)Prostate tumor susceptibility6119232373Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human
597113869GWAS1209943_Hintraocular pressure measurement QTL GWAS1209943 (human)3e-12intraocular pressure measurement6597203597204Human
1643495BW291_HBody Weight QTL 291 (human)2.13Body weightBMI6119321359Human

1 to 10 of 11 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1209943_H GCST005580 Intraocular pressure 115,486 European ancestry individuals C 0.8473 3E-12 11.523 rs113985657 0.135 intraocular pressure measurement (EFO:0004695)
 PMID:29617998
GWAS1138681_H GCST010376 Intraocular pressure 101,939 European ancestry cases T NR 5E-10 9.302 rs113985657 0.12 intraocular pressure measurement (EFO:0004695)
 PMID:32352494
GWAS1145195_H GCST006412 Intraocular pressure 139,555 European ancestry individuals C 0.846 1E-15 15 rs113985657 0.146 intraocular pressure measurement (EFO:0004695)
 PMID:29785010
None Available GCST006394 Intraocular pressure 133,492 European ancestry individuals ? NR 3E-12 11.523 rs113985657 0.1275 intraocular pressure measurement (EFO:0004695)
 PMID:30054594
GWAS1308737_H GCST006395 Glaucoma 11,018 European ancestry cases, 126,068 European ancestry controls ? NR 2E-7 6.699 rs113985657 1.1142706 PMID:30054594
GWAS1409016_H GCST90019002 Medication use (antiglaucoma preparations and miotics) 5,215 European ancestry cases, 95,653 European ancestry controls, 5,911 East Asian ancestry cases, 172,815 East Asian ancestry controls T NR 1E-10 10 rs113985657 0.1154 Antiglaucoma preparations and miotics use measurement (EFO:0009944)
 PMID:34594039
Database
Acc Id
Source(s)
GWAS Catalog GCST005580 GWAS Catalog
  GCST006394 GWAS Catalog

Note Type Note Reference