GWAS1635490_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1635490_H (hematocrit QTL GWAS1635490 (human)) Homo sapiens

Symbol: GWAS1635490_H
Name: hematocrit QTL GWAS1635490 (human)
RGD ID: 597578630
Trait: hematocrit
Measurement Type: hematocrit   (CMO:0000037)    
LOD Score: Not Available
P Value: 4.0E-15
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3867,214,266 - 7,214,267RGD_MAPPER_PIPELINEGRCh38
GRCh3767,214,499 - 7,214,500RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1635490_HHumanhematocrit  IAGPrs17672692405850206 GWAS_CATALOGPMID:39024449

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1635490_HHumanhematocrit  IAGPrs17672692405850206 GWAS_CATALOGPMID:39024449

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1322078RREB1ras responsive element binding protein 1671077437251980Human


Peak: (rs17672692)
Human AssemblyChrPosition (strand)Source
GRCh3867,214,266 - 7,214,267RGD_MAPPER_PIPELINE


1 to 10 of 18 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289408BW324_HBody weight QTL 324 (human)3.150.0001Body fat amount6120803913Human
597611772GWAS1668632_Herythrocyte count QTL GWAS1668632 (human)2e-13erythrocyte countred blood cell count (CMO:0000025)672142667214267Human
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
597578872GWAS1635732_Hhemoglobin measurement QTL GWAS1635732 (human)2e-16hemoglobin measurementhemoglobin measurement (CMO:0000508)672142667214267Human
1643377BW325_HBody weight QTL 325 (human)2.320.0005Body fat amount6691196032911960Human
1643569GLUCO21_HGlucose level QTL 21 (human)0.021Glucose levelnon-insulin-dependent6691196032911960Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human
597578803GWAS1635663_Hhemoglobin measurement QTL GWAS1635663 (human)2e-12hemoglobin measurementhemoglobin measurement (CMO:0000508)672142667214267Human
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human

1 to 10 of 18 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1635490_H GCST90479630 hematocrit (minimum, inv-norm transformed) 114,988 African American or Afro-Caribbean individuals, 55,841 Hispanic or Latin American individuals, 5,964 East Asian ancestry individuals, 407,854 European ancestry individuals C 0.863 4E-15 14.398 rs17672692 0.02915 hematocrit (EFO:0004348)
 PMID:39024449
GWAS1635663_H GCST90479640 hemoglobin (minimum, inv-norm transformed) 114,985 African American or Afro-Caribbean individuals, 55,838 Hispanic or Latin American individuals, 5,963 East Asian ancestry individuals, 407,894 European ancestry individuals C 0.863 2E-12 11.699 rs17672692 0.02552 hemoglobin measurement (EFO:0004509)
 PMID:39024449
GWAS1635679_H GCST90479629 hematocrit (mean, inv-norm transformed) 114,988 African American or Afro-Caribbean individuals, 55,841 Hispanic or Latin American individuals, 5,964 East Asian ancestry individuals, 407,852 European ancestry individuals C 0.863 8E-20 19.097 rs17672692 0.03605 hematocrit (EFO:0004348)
 PMID:39024449
GWAS1635732_H GCST90479639 hemoglobin (mean, inv-norm transformed) 114,985 African American or Afro-Caribbean individuals, 55,838 Hispanic or Latin American individuals, 5,963 East Asian ancestry individuals, 407,894 European ancestry individuals C 0.863 2E-16 15.699 rs17672692 0.03132 hemoglobin measurement (EFO:0004509)
 PMID:39024449
GWAS1668632_H GCST90480669 red blood cell count (RBC, mean, inv-norm transformed) 114,768 African American or Afro-Caribbean individuals, 55,750 Hispanic or Latin American individuals, 5,943 East Asian ancestry individuals, 405,366 European ancestry individuals C 0.863 2E-13 12.699 rs17672692 0.03116 erythrocyte count (EFO:0004305)
 PMID:39024449
GWAS1530732_H GCST90133946 HWESASXX levels in elite athletes 490 individuals ? NR 0.000006 5.222 rs17672692 0.5209184 HWESASXX measurement (EFO:0021147)
 PMID:31882771
GWAS1624271_H GCST90244094 Lung function (FEV1/FVC) 475,645 European ancestry individuals, 8,590 African ancestry individuals, 85,279 East Asian ancestry individuals, 4,270 South Asian ancestry individuals, 14,668 Hispanic or Latin American individuals T 0.184 1E-10 10 rs17672692 6.414 FEV/FVC ratio (EFO:0004713)
 PMID:36914875
Database
Acc Id
Source(s)
GWAS Catalog GCST90479630 GWAS Catalog

Note Type Note Reference