GWAS1577890_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1577890_H (ghrelin measurement QTL GWAS1577890 (human)) Homo sapiens

Symbol: GWAS1577890_H
Name: ghrelin measurement QTL GWAS1577890 (human)
RGD ID: 597481816
Trait: blood ghrelin amount   (VT:0010695)    
LOD Score: Not Available
P Value: 9.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3862,914,711 - 2,914,712RGD_MAPPER_PIPELINEGRCh38
GRCh3762,914,945 - 2,914,946RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1577890_HHumanblood ghrelin amount  IAGPrs199890456405850206 GWAS_CATALOGPMID:34620218

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1577890_HHumanghrelin measurement  IAGPrs199890456405850206 GWAS_CATALOGPMID:34620218

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs199890456)
Human AssemblyChrPosition (strand)Source
GRCh3862,914,711 - 2,914,712RGD_MAPPER_PIPELINE


1 to 10 of 10 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597481804GWAS1577878_Hcomplement factor D measurement QTL GWAS1577878 (human)4e-09complement protein amount (VT:0010033)629147112914712Human
2289408BW324_HBody weight QTL 324 (human)3.150.0001Body fat amount6120803913Human
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
597481816GWAS1577890_Hghrelin measurement QTL GWAS1577890 (human)9e-12blood ghrelin amount (VT:0010695)629147112914712Human
597479945GWAS1576019_Hcomplement factor D measurement QTL GWAS1576019 (human)5e-08complement protein amount (VT:0010033)629147112914712Human
597481801GWAS1577875_Hcomplement factor D measurement QTL GWAS1577875 (human)3e-08complement protein amount (VT:0010033)629147112914712Human
2289435BMD4_HBone mineral density QTL 4 (human)3.150.0001Bone mineral density6120803913Human
2292824PRSTS5_HProstate tumor susceptibility QTL 5 (human)Prostate tumor susceptibility6119232373Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human
1643495BW291_HBody Weight QTL 291 (human)2.13Body weightBMI6119321359Human

1 to 10 of 10 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1577890_H GCST90091184 ghrelin levels in overweight individuals 2,220 Sub-Saharan African ancestry individuals T NR 9E-12 11.046 rs199890456 0.301 ghrelin measurement (EFO:0600001)
 PMID:34620218
GWAS1576019_H GCST90091199 Adipsin levels in type 2 diabetes 1,820 Sub-Saharan African ancestry individuals T NR 5E-8 7.302 rs199890456 0.251 complement factor D measurement (EFO:0020283)
 PMID:34620218
GWAS1577875_H GCST90091147 Adipsin levels 1,510 Sub-Saharan African ancestry men T NR 3E-8 7.523 rs199890456 0.285 complement factor D measurement (EFO:0020283)
 PMID:34620218
GWAS1577878_H GCST90091176 Adipsin levels in overweight individuals 2,166 Sub-Saharan African ancestry individuals T NR 4E-9 8.398 rs199890456 0.268 complement factor D measurement (EFO:0020283)
 PMID:34620218
Database
Acc Id
Source(s)
GWAS Catalog GCST90091184 GWAS Catalog

Note Type Note Reference