GWAS1644039_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1644039_H (drug use measurement, skin disease QTL GWAS1644039 (human)) Homo sapiens

Symbol: GWAS1644039_H
Name: drug use measurement, skin disease QTL GWAS1644039 (human)
RGD ID: 597587179
Trait: drug use measurement, skin disease
LOD Score: Not Available
P Value: 8.0E-15
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38617,602,639 - 17,602,640RGD_MAPPER_PIPELINEGRCh38
GRCh37617,602,870 - 17,602,871RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1644039_HHumanskin disease  IAGPrs200868187405850206 GWAS_CATALOGPMID:39024449

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1644039_HHumanAbnormality of the skin  IAGPrs200868187405850206 GWAS_CATALOGPMID:39024449
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1644039_HHumandrug use measurement  IAGPrs200868187405850206 GWAS_CATALOGPMID:39024449
GWAS1644039_HHumanskin disease  IAGPrs200868187405850206 GWAS_CATALOGPMID:39024449

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1351875FAM8A1family with sequence similarity 8 member A161760030217611715Human
155654732LOC127405453H3K4me1 hESC enhancer GRCh37_chr6:17602439-1760293961760220817602708Human


Peak: (rs200868187)
Human AssemblyChrPosition (strand)Source
GRCh38617,602,639 - 17,602,640RGD_MAPPER_PIPELINE


1 to 10 of 40 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597591966GWAS1648826_Hpsoriatic arthritis QTL GWAS1648826 (human)3e-35psoriatic arthritis61760263917602640Human
597602654GWAS1659514_Hmonocyte count QTL GWAS1659514 (human)2e-14monocyte quantity (VT:0000223)blood monocyte count (CMO:0000032)61760263917602640Human
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
597586523GWAS1643383_Heosinophil count QTL GWAS1643383 (human)3e-20eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)61760263917602640Human
597588502GWAS1645362_Hmacular degeneration QTL GWAS1645362 (human)4e-14macular degeneration61760263917602640Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human
597596496GWAS1653356_Heosinophil count QTL GWAS1653356 (human)3e-28monocyte quantity (VT:0000223)blood monocyte count (CMO:0000032)61760263917602640Human
597587215GWAS1644075_Hskin disease QTL GWAS1644075 (human)4e-20skin disease61760263917602640Human
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human

1 to 10 of 40 rows


1 to 20 of 36 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1644039_H GCST90479594 Takes medication for Skin condition (ex. Eczema, Psoriasis)? 3,695 African American or Afro-Caribbean cases, 51,810 African American or Afro-Caribbean controls, 1,700 Hispanic or Latin American cases, 27,614 Hispanic or Latin American controls, 345 East Asian ancestry cases, 3,202 East Asian ancestry controls, 17,897 European ancestry cases, 297,771 European ancestry controls G 0.9718 8E-15 14.097 rs200868187 0.2199 drug use measurement (EFO:0007010)
skin disease (EFO:0000701)
 PMID:39024449
GWAS1642504_H GCST90479604 eosinophil (fraction, maximum, inv-norm transformed) 98,055 African American or Afro-Caribbean individuals, 47,410 Hispanic or Latin American individuals, 4,652 East Asian ancestry individuals, 335,542 European ancestry individuals G 0.9739 2E-11 10.699 rs200868187 0.06402 eosinophil count (EFO:0004842)
 PMID:39024449
GWAS1643383_H GCST90479602 eosinophil (absolute count, mean, inv-norm transformed) 90,448 African American or Afro-Caribbean individuals, 42,397 Hispanic or Latin American individuals, 3,996 East Asian ancestry individuals, 310,757 European ancestry individuals G 0.9738 3E-20 19.523 rs200868187 0.09529 eosinophil count (EFO:0004842)
 PMID:39024449
GWAS1643709_H GCST90479601 eosinophil (absolute count, maximum, inv-norm transformed) 90,403 African American or Afro-Caribbean individuals, 42,380 Hispanic or Latin American individuals, 3,995 East Asian ancestry individuals, 310,588 European ancestry individuals G 0.9738 2E-19 18.699 rs200868187 0.09031 eosinophil count (EFO:0004842)
 PMID:39024449
GWAS1644075_H GCST90479595 Skin condition (ex. Eczema, Psoriasis) 6,069 African American or Afro-Caribbean cases, 49,436 African American or Afro-Caribbean controls, 3,028 Hispanic or Latin American cases, 26,286 Hispanic or Latin American controls, 563 East Asian ancestry cases, 2,984 East Asian ancestry controls, 32,976 European ancestry cases, 282,692 European ancestry controls G 0.9718 4E-20 19.398 rs200868187 0.203 skin disease (EFO:0000701)
 PMID:39024449
GWAS1645362_H GCST90475851 Macular degeneration, dry (PheCode 362.21) 27,144 European ancestry cases, 412,580 European ancestry controls G 0.9669 4E-14 13.398 rs200868187 0.1798 macular degeneration (EFO:0009606)
 PMID:39024449
GWAS1648718_H GCST90476170 Erythematosquamous dermatosis (PheCode 690) 31,321 European ancestry cases, 393,906 European ancestry controls G 0.967 5E-14 13.302 rs200868187 0.165 erythematosquamous dermatosis (EFO:1000695)
 PMID:39024449
GWAS1648826_H GCST90476191 Psoriatic arthropathy (PheCode 696.42) 3,087 European ancestry cases, 447,533 European ancestry controls G 0.9669 3E-35 34.523 rs200868187 0.7411 psoriatic arthritis (EFO:0003778)
 PMID:39024449
GWAS1648843_H GCST90476187 Psoriasis (PheCode 696.4) 16,283 European ancestry cases, 428,468 European ancestry controls G 0.9669 3E-101 100.523 rs200868187 0.5809 psoriasis (EFO:0000676)
 PMID:39024449
GWAS1648931_H GCST90476171 Seborrheic dermatitis (PheCode 690.1) 31,107 European ancestry cases, 394,738 European ancestry controls G 0.967 5E-13 12.302 rs200868187 0.1593 seborrheic dermatitis (EFO:1000764)
 PMID:39024449
GWAS1648965_H GCST90476186 Psoriasis and related disorder (PheCode 696) 16,702 European ancestry cases, 427,092 European ancestry controls G 0.9669 3E-99 98.523 rs200868187 0.569 psoriasis (EFO:0000676)
 PMID:39024449
GWAS1648999_H GCST90476190 Psoriasis vulgaris (PheCode 696.41) 15,635 European ancestry cases, 429,252 European ancestry controls G 0.9669 4E-98 97.398 rs200868187 0.5816 psoriasis vulgaris (EFO:1001494)
 PMID:39024449
None Available GCST90480043 Macular degeneration, dry (PheCode 362.21) 1,083 African American or Afro-Caribbean cases, 119,609 African American or Afro-Caribbean controls, 27,144 European ancestry cases, 412,580 European ancestry controls, 1,519 Hispanic or Latin American cases, 57,488 Hispanic or Latin American controls G 0.9736 5E-13 12.302 rs200868187 0.1901 macular degeneration (EFO:0009606)
 PMID:39024449
GWAS1651661_H GCST90475297 eosinophil (fraction, maximum, inv-norm transformed) 335,542 European ancestry individuals G 0.9667 5E-15 14.302 rs200868187 0.06294 eosinophil count (EFO:0004842)
 PMID:39024449
GWAS1651688_H GCST90475300 eosinophil (fraction, mean, inv-norm transformed) 335,542 European ancestry individuals G 0.9667 2E-13 12.699 rs200868187 0.06081 eosinophil count (EFO:0004842)
 PMID:39024449
GWAS1652823_H GCST90475274 Skin condition (ex. Eczema, Psoriasis) 32,976 European ancestry cases, 282,692 European ancestry controls G 0.9669 5E-22 21.302 rs200868187 0.2105 skin disease (EFO:0000701)
 PMID:39024449
GWAS1652837_H GCST90475275 Takes medication for Skin condition (ex. Eczema, Psoriasis)? 17,897 European ancestry cases, 297,771 European ancestry controls G 0.9669 2E-15 14.699 rs200868187 0.2276 drug use measurement (EFO:0007010)
skin disease (EFO:0000701)
 PMID:39024449
GWAS1653138_H GCST90475288 eosinophil (absolute count, maximum, inv-norm transformed) 310,588 European ancestry individuals G 0.9666 2E-25 24.699 rs200868187 0.08739 eosinophil count (EFO:0004842)
 PMID:39024449
GWAS1653356_H GCST90475291 eosinophil (absolute count, mean, inv-norm transformed) 310,757 European ancestry individuals G 0.9666 3E-28 27.523 rs200868187 0.09444 eosinophil count (EFO:0004842)
 PMID:39024449
GWAS1658577_H GCST90475514 monocyte (fraction, minimum, inv-norm transformed) 296,975 European ancestry individuals G 0.9666 4E-15 14.398 rs200868187 0.06797 monocyte count (EFO:0005091)
 PMID:39024449
1 to 20 of 36 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90479594 GWAS Catalog

Note Type Note Reference