Advanced Search (OLGA)

QTL Registration

General

QTL: GWAS1405446_H (vaginal microbiome measurement QTL GWAS1405446 (human)) Homo sapiens

Symbol:

GWAS1405446_H

Name:

vaginal microbiome measurement QTL GWAS1405446 (human)

RGD ID:

597309372

Trait:

vaginal microbiome measurement

LOD Score:

Not Available

P Value:

4.0E-6

Variance:

Not Available

Position

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh38	6	1,906,694 - 1,906,695	RGD_MAPPER_PIPELINE	GRCh38
GRCh37	6	1,906,928 - 1,906,929	RGD_MAPPER_PIPELINE	GRCh37

Population Stats:

Not Available

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
GWAS1405446_H	Human	vaginal microbiome measurement		IAGP	rs3823280	405850206		GWAS_CATALOG	PMID:34282934

#	Reference Title	Reference Citation
1.	RGD GWAS Catalog Import Pipeline	RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

The following Genes overlap with this region.

RGD ID	Symbol	Name	Chr	Start	Stop	Species
1322234	GMDS	GDP-mannose 4,6-dehydratase	6	1623806	2245605	Human

Peak: (rs3823280)

Human Assembly	Chr	Position (strand)	Source
GRCh38	6	1,906,694 - 1,906,695	RGD_MAPPER_PIPELINE

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2289408	BW324_H	Body weight QTL 324 (human)	3.15	0.0001	Body fat amount		6	1	20803913	Human
597311736	GWAS1407810_H	vaginal microbiome measurement QTL GWAS1407810 (human)		0.000003	vaginal microbiome measurement		6	1906694	1906695	Human
1643418	BW282_H	Body Weight QTL 282 (human)	2.07	0.001	Body weight		6	1	19321359	Human
597309372	GWAS1405446_H	vaginal microbiome measurement QTL GWAS1405446 (human)		0.000004	vaginal microbiome measurement		6	1906694	1906695	Human
2289435	BMD4_H	Bone mineral density QTL 4 (human)	3.15	0.0001	Bone mineral density		6	1	20803913	Human
2292824	PRSTS5_H	Prostate tumor susceptibility QTL 5 (human)			Prostate tumor susceptibility		6	1	19232373	Human
2289320	BW390_H	Body weight QTL 390 (human)	2.13		Body weight	BMI	6	1	19321359	Human
1643495	BW291_H	Body Weight QTL 291 (human)	2.13		Body weight	BMI	6	1	19321359	Human

Data has come from the GWAS Catalog		Download
The highlighted row represents the current QTL

QTL	GWAS Catalog Study	Disease Trait	Study Size	Risk Allele	Risk Allele Frequency	P Value	P Value MLOG	Peak Marker	Reported Odds Ratio or Beta-coefficient	Ontology Accession	PubMed
GWAS1405446_H	GCST90026781	Vaginal microbiome MetaCyc pathway (POLYAMSYN-PWY\|superpathway of polyamine biosynthesis I)	315 Chinese ancestry individuals	G	NR	0.000004	5.398	rs3823280	0.4048	vaginal microbiome measurement (EFO:0011013)	PMID:34282934
GWAS1407810_H	GCST90026941	Vaginal microbiome MetaCyc pathway (PWY0-1261\|anhydromuropeptides recycling)	315 Chinese ancestry individuals	G	NR	0.000003	5.523	rs3823280	0.4627	vaginal microbiome measurement (EFO:0011013)	PMID:34282934

Database	Acc Id	Source(s)
GWAS Catalog	GCST90026781	GWAS Catalog

Note Type	Note	Reference

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
		Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Create Name:

Description:

Send us a Message

QTL: GWAS1405446_H (vaginal microbiome measurement QTL GWAS1405446 (human)) Homo sapiens