rs3823280 Rat Genome Database

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Variant: rs3823280 -  Homo sapiens

RGD ID: 406314321
RS ID: rs3823280
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: GMDS  
Reference Nucleotide: G
Variant Nucleotide: G
Position
Assembly Chr Position
GRCh38 6 1,906,694
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
rs3823280Humanvaginal microbiome measurement  IAGP 405850206 GWAS_CATALOGPMID:34282934
Data has come from the GWAS Catalog   
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1405446_H GCST90026781 Vaginal microbiome MetaCyc pathway (POLYAMSYN-PWY|superpathway of polyamine biosynthesis I) 315 Chinese ancestry individuals G NR 0.000004 5.398 rs3823280 0.4048 vaginal microbiome measurement (EFO:0011013)
 PMID:34282934
GWAS1407810_H GCST90026941 Vaginal microbiome MetaCyc pathway (PWY0-1261|anhydromuropeptides recycling) 315 Chinese ancestry individuals G NR 0.000003 5.523 rs3823280 0.4627 vaginal microbiome measurement (EFO:0011013)
 PMID:34282934

Gene Symbol:GMDS
Accession:NM_001500
Location:INTRON

Gene Symbol:GMDS
Accession:NM_001253846
Location:INTRON

Gene Symbol:GMDS
Accession:XM_006715066
Location:INTRON

Gene Symbol:GMDS
Accession:XM_011514500
Location:INTRON

Gene Symbol:GMDS
Accession:XM_011514502
Location:INTRON

Gene Symbol:GMDS
Accession:XM_011514507
Location:INTRON

Gene Symbol:GMDS
Accession:XM_011514506
Location:INTRON

Gene Symbol:GMDS
Accession:XM_011514505
Location:INTRON

Gene Symbol:GMDS
Accession:XM_011514503
Location:INTRON

Gene Symbol:GMDS
Accession:XM_017010752
Location:INTRON

Gene Symbol:GMDS
Accession:XM_047418655
Location:INTRON

Gene Symbol:GMDS
Accession:XR_007059239
Location:INTRON;NON-CODING

.


Database
Acc Id
Source(s)
GWAS Catalog GCST90026781 GWAS Catalog
  GCST90026941 GWAS Catalog