GWAS1556052_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1556052_H (phospholipids in large LDL measurement QTL GWAS1556052 (human)) Homo sapiens

Symbol: GWAS1556052_H
Name: phospholipids in large LDL measurement QTL GWAS1556052 (human)
RGD ID: 597459978
Trait: phospholipids in large LDL measurement
Measurement Type: blood low density lipoprotein phospholipid level   (CMO:0001568)    
LOD Score: Not Available
P Value: 8.0E-16
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38616,113,090 - 16,113,091RGD_MAPPER_PIPELINEGRCh38
GRCh37616,113,321 - 16,113,322RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1556052_HHumanblood low density lipoprotein phospholipid level  IAGPrs7776156405850206 GWAS_CATALOGPMID:38448586

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1556052_HHumanphospholipids in large LDL measurement  IAGPrs7776156405850206 GWAS_CATALOGPMID:38448586

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs7776156)
Human AssemblyChrPosition (strand)Source
GRCh38616,113,090 - 16,113,091RGD_MAPPER_PIPELINE


1 to 10 of 28 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597456924GWAS1552998_Hphospholipids in IDL measurement QTL GWAS1552998 (human)3e-16phospholipids in IDL measurementblood low density lipoprotein cholesterol level (CMO:0000053)61611309016113091Human
597486749GWAS1582823_Htotal cholesterol measurement, low density lipoprotein cholesterol measurement QTL GWAS1582823 (human)7e-17total cholesterol measurement, low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)61611309016113091Human
597405722GWAS1501796_Htotal lipids in small LDL QTL GWAS1501796 (human)9e-16total lipids in small LDL61611309016113091Human
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
597459673GWAS1555747_Hlow density lipoprotein cholesterol measurement, phospholipids:total lipids ratio QTL GWAS1555747 (human)3e-17low density lipoprotein cholesterol measurement, phospholipids:total lipids ratioblood low density lipoprotein cholesterol level (CMO:0000053)61611309016113091Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human
597487318GWAS1583392_Hlinoleic acid measurement QTL GWAS1583392 (human)1e-09linoleic acid measurementblood free fatty acids level (CMO:0000117)61611309016113091Human
597457105GWAS1553179_Htotal lipids in IDL QTL GWAS1553179 (human)2e-15total lipids in IDL61611309016113091Human
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human

1 to 10 of 28 rows


1 to 20 of 23 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1556052_H GCST90302015 Phospholipids in large LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.4722 8E-16 15.097 rs7776156 0.0331 phospholipids in large LDL measurement (EFO:0022174)
 PMID:38448586
GWAS1501796_H GCST90302097 Total lipids in small LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.4722 9E-16 15.046 rs7776156 0.033 total lipids in small LDL (EFO:0022168)
 PMID:38448586
GWAS1502142_H GCST90302098 Concentration of small LDL particles 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.4722 1E-15 15 rs7776156 0.0328 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:38448586
GWAS1502219_H GCST90301961 Omega-6 fatty acids levels 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.472 6E-10 9.222 rs7776156 0.0254 omega-6 polyunsaturated fatty acid measurement (EFO:0005680)
 PMID:38448586
GWAS1503725_H GCST90302158 Phospholipids in very small VLDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.4721 1E-12 12 rs7776156 0.0291 phospholipids in VLDL measurement (EFO:0022301)
 PMID:38448586
GWAS1504641_H GCST90302075 Serum total cholesterol levels 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.4721 7E-14 13.155 rs7776156 0.0306 total cholesterol measurement (EFO:0004574)
 PMID:38448586
GWAS1505229_H GCST90302071 Polyunsaturated fatty acids 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.472 2E-9 8.699 rs7776156 0.0247 polyunsaturated fatty acid measurement (EFO:0010733)
 PMID:38448586
GWAS1552213_H GCST90302043 Total cholesterol in medium LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.4722 8E-17 16.097 rs7776156 0.0342 total cholesterol in medium LDL (EFO:0022185)
 PMID:38448586
GWAS1552686_H GCST90301982 Concentration of IDL particles 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.4721 3E-15 14.523 rs7776156 0.0322 intermediate density lipoprotein measurement (EFO:0008595)
 PMID:38448586
None Available GCST90301979 Free cholesterol in IDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.4722 1E-15 15 rs7776156 0.0328 free cholesterol in IDL measurement (EFO:0022181)
 PMID:38448586
GWAS1552998_H GCST90301983 Phospholipids in IDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.4722 3E-16 15.523 rs7776156 0.0335 phospholipids in IDL measurement (EFO:0022164)
 PMID:38448586
GWAS1553007_H GCST90302050 Concentration of medium LDL particles 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.4722 2E-16 15.699 rs7776156 0.0337 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:38448586
GWAS1553179_H GCST90301981 Total lipids in IDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.4721 2E-15 14.699 rs7776156 0.0324 total lipids in IDL (EFO:0022161)
 PMID:38448586
None Available GCST90302014 Concentration of large LDL particles 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.4722 3E-16 15.523 rs7776156 0.0335 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:38448586
GWAS1555747_H GCST90302016 Phospholipids to total lipids ratio in large LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.4708 3E-17 16.523 rs7776156 0.0335 low density lipoprotein cholesterol measurement (EFO:0004611)
phospholipids:total lipids ratio (EFO:0020946)
 PMID:38448586
None Available GCST90302013 Total lipids in large LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.4722 2E-16 15.699 rs7776156 0.0338 total lipids in large LDL (EFO:0022163)
 PMID:38448586
None Available GCST90302049 Total lipid levels in medium LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.4722 2E-16 15.699 rs7776156 0.0338 low density lipoprotein cholesterol measurement (EFO:0004611)
lipid measurement (EFO:0004529)
 PMID:38448586
GWAS1582823_H GCST90301991 Total cholesterol levels in LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.4722 7E-17 16.155 rs7776156 0.0343 total cholesterol measurement (EFO:0004574)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:38448586
GWAS1583392_H GCST90301988 Linoleic acid (18:2) levels 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.472 1E-9 9 rs7776156 0.0248 linoleic acid measurement (EFO:0006807)
 PMID:38448586
GWAS1583615_H GCST90301957 Esterified cholesterol levels 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.4721 2E-13 12.699 rs7776156 0.0302 esterified cholesterol measurement (EFO:0008589)
 PMID:38448586
1 to 20 of 23 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90302015 GWAS Catalog

Note Type Note Reference