GWAS1386178_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1386178_H (total cholesterol in small LDL QTL GWAS1386178 (human)) Homo sapiens

Symbol: GWAS1386178_H
Name: total cholesterol in small LDL QTL GWAS1386178 (human)
RGD ID: 597290104
Trait: total cholesterol in small LDL
LOD Score: Not Available
P Value: 2.0E-16
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38616,114,017 - 16,114,018RGD_MAPPER_PIPELINEGRCh38
GRCh37616,114,248 - 16,114,249RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1386178_HHumantotal cholesterol in small LDL  IAGPrs1569446405850206 GWAS_CATALOGPMID:38448586

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs1569446)
Human AssemblyChrPosition (strand)Source
GRCh38616,114,017 - 16,114,018RGD_MAPPER_PIPELINE


1 to 10 of 15 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597290104GWAS1386178_Htotal cholesterol in small LDL QTL GWAS1386178 (human)2e-16total cholesterol in small LDL61611401716114018Human
2289408BW324_HBody weight QTL 324 (human)3.150.0001Body fat amount6120803913Human
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
1643377BW325_HBody weight QTL 325 (human)2.320.0005Body fat amount6691196032911960Human
1643569GLUCO21_HGlucose level QTL 21 (human)0.021Glucose levelnon-insulin-dependent6691196032911960Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human
597287561GWAS1383635_Hcholesterol:total lipids ratio, cholesteryl esters:total lipids ratio QTL GWAS1383635 (human)3e-15cholesterol:total lipids ratio, cholesteryl esters:total lipids ratio61611401716114018Human
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human
597284079GWAS1380153_Hcholesterol esters in medium LDL measurement QTL GWAS1380153 (human)7e-17cholesterol esters in medium LDL measurement61611401716114018Human

1 to 10 of 15 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1386178_H GCST90302091 Total Cholesterol in small LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.5273 2E-16 15.699 rs1569446 0.0337 total cholesterol in small LDL (EFO:0022179)
 PMID:38448586
GWAS1380153_H GCST90302045 Cholesterol esters in medium LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.5273 7E-17 16.155 rs1569446 0.0343 cholesterol esters in medium LDL measurement (EFO:0022186)
 PMID:38448586
GWAS1382443_H GCST90302093 Cholesterol esters in small LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.5272 9E-17 16.046 rs1569446 0.0342 esterified cholesterol measurement (EFO:0008589)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:38448586
GWAS1383635_H GCST90302094 Cholesteryl esters to total lipids ratio in small LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.5275 3E-15 14.523 rs1569446 0.0322 cholesterol:total lipids ratio (EFO:0020943)
cholesteryl esters:total lipids ratio (EFO:0020944)
 PMID:38448586
Database
Acc Id
Source(s)
GWAS Catalog GCST90302091 GWAS Catalog

Note Type Note Reference