GWAS1203826_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1203826_H (Red cell distribution width QTL GWAS1203826 (human)) Homo sapiens

Symbol: GWAS1203826_H
Name: Red cell distribution width QTL GWAS1203826 (human)
RGD ID: 597107752
Trait: Red cell distribution width
Measurement Type: red blood cell distribution width- standard deviation   (CMO:0003232)    
red blood cell distribution width-coefficient of variation   (CMO:0000041)    
LOD Score: Not Available
P Value: 4.0E-13
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38616,290,617 - 16,290,620RGD_MAPPER_PIPELINEGRCh38
GRCh37616,290,848 - 16,290,851RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1203826_HHumanRed cell distribution width  IAGPrs147049568405850206 GWAS_CATALOGPMID:32888494

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
733310GMPRguanosine monophosphate reductase61623858716295549Human


Peak: (rs147049568)
Human AssemblyChrPosition (strand)Source
GRCh38616,290,617 - 16,290,620RGD_MAPPER_PIPELINE


1 to 10 of 28 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
596976404GWAS1095923_HRed cell distribution width QTL GWAS1095923 (human)4e-13Red cell distribution width61629061716290620Human
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
597116884GWAS1212958_Hmean corpuscular hemoglobin concentration QTL GWAS1212958 (human)8e-80mean corpuscular hemoglobin concentrationmean corpuscular hemoglobin concentration (CMO:0000291)61629061716290620Human
407390988GWAS1039964_Hobsolete_red blood cell distribution width QTL GWAS1039964 (human)6e-24obsolete_red blood cell distribution width61629061716290620Human
597079760GWAS1175834_Hmean corpuscular hemoglobin concentration QTL GWAS1175834 (human)7e-13mean corpuscular hemoglobin concentrationmean corpuscular hemoglobin concentration (CMO:0000291)61629061716290620Human
406993610GWAS642586_Hreticulocyte count QTL GWAS642586 (human)2e-27reticulocyte quantity (VT:0003135)total reticulocyte count (CMO:0003020)61629061716290620Human
597106079GWAS1202153_Hreticulocyte measurement QTL GWAS1202153 (human)4e-34reticulocyte morphology trait (VT:0002424)red blood cell measurement (CMO:0001356)61629061716290620Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human

1 to 10 of 28 rows


1 to 16 of 16 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1203826_H GCST90002404 Red cell distribution width 408,112 British individuals TAC 0.00206700000000004 4E-13 12.398 rs147049568 0.20296459 Red cell distribution width (EFO:0009188)
 PMID:32888494
GWAS642586_H GCST90002385 High light scatter reticulocyte count 408,112 British individuals TAC 0.00205599999999995 2E-27 26.699 rs147049568 0.30567223 reticulocyte count (EFO:0007986)
 PMID:32888494
GWAS643686_H GCST90002386 High light scatter reticulocyte percentage of red cells 408,112 British individuals TAC 0.00205599999999995 5E-32 31.302 rs147049568 0.33246335 reticulocyte measurement (EFO:0010700)
 PMID:32888494
GWAS1717242_H GCST90025963 Mean corpuscular volume 444,035 European ancestry individuals ? NR 3E-55 54.523 rs147049568 0.318128 erythrocyte volume (OBA:0003460)
 PMID:34226706
GWAS1175146_H GCST90002390 Mean corpuscular hemoglobin 408,112 British individuals TAC 0.00206499999999998 3E-49 48.523 rs147049568 0.3984786 mean corpuscular hemoglobin (EFO:0004527)
 PMID:32888494
GWAS1175834_H GCST90002391 Mean corpuscular hemoglobin concentration 408,112 British individuals TAC 0.00206399999999995 7E-13 12.155 rs147049568 0.224911 mean corpuscular hemoglobin concentration (EFO:0004528)
 PMID:32888494
GWAS1718226_H GCST90025971 Immature fraction of reticulocytes 438,154 European ancestry individuals ? NR 5E-13 12.302 rs147049568 0.164024 reticulocyte amount (OBA:0002272)
 PMID:34226706
GWAS1202153_H GCST90002406 Reticulocyte fraction of red cells 408,112 British individuals TAC 0.00206099999999998 4E-34 33.398 rs147049568 0.3453226 reticulocyte measurement (EFO:0010700)
 PMID:32888494
GWAS1202685_H GCST90002405 Reticulocyte count 408,112 British individuals TAC 0.00206200000000001 1E-27 27 rs147049568 0.3092151 reticulocyte count (EFO:0007986)
 PMID:32888494
GWAS1211405_H GCST90025970 High light scatter reticulocyte count 437,723 European ancestry individuals ? NR 6E-37 36.222 rs147049568 0.285313 reticulocyte count (EFO:0007986)
 PMID:34226706
GWAS1212523_H GCST90025972 Reticulocyte count 437,291 European ancestry individuals ? NR 8E-35 34.097 rs147049568 0.284311 reticulocyte count (EFO:0007986)
 PMID:34226706
GWAS1212958_H GCST90025962 Mean corpuscular hemoglobin concentration 443,081 European ancestry individuals ? NR 8E-80 79.097 rs147049568 0.395292 mean corpuscular hemoglobin concentration (EFO:0004528)
 PMID:34226706
GWAS1213165_H GCST90025969 Hemoglobin levels 445,373 European ancestry individuals ? NR 2E-9 8.699 rs147049568 0.127384 hemoglobin measurement (EFO:0004509)
 PMID:34226706
GWAS1214422_H GCST90025964 Red blood cell count 445,305 European ancestry individuals ? NR 2E-12 11.699 rs147049568 0.160974 erythrocyte count (EFO:0004305)
 PMID:34226706
GWAS1217230_H GCST90025988 Red cell distribution width 441,263 European ancestry individuals ? NR 6E-24 23.222 rs147049568 0.231037 Red cell distribution width (EFO:0009188)
 PMID:34226706
GWAS1736153_H GCST90002392 Mean corpuscular volume 408,112 British individuals TAC 0.00206399999999995 5E-39 38.302 rs147049568 0.364517 erythrocyte volume (OBA:0003460)
 PMID:32888494
1 to 16 of 16 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90002404 GWAS Catalog

Note Type Note Reference