GWAS1736153_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1736153_H (erythrocyte volume QTL GWAS1736153 (human)) Homo sapiens

Symbol: GWAS1736153_H
Name: erythrocyte volume QTL GWAS1736153 (human)
RGD ID: 598016854
Trait: erythrocyte volume
LOD Score: Not Available
P Value: 5.0E-39
Variance: Not Available
Position No map positions available.
Population Stats: Not Available



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1736153_HHumanerythrocyte volume  IAGPrs147049568405850206 GWAS_CATALOGPMID:32888494

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs147049568)
Human AssemblyChrPosition (strand)Source
GRCh38616,290,617 - 16,290,620RGD_MAPPER_PIPELINE



1 to 16 of 16 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1736153_H GCST90002392 Mean corpuscular volume 408,112 British individuals TAC 0.00206399999999995 5E-39 38.302 rs147049568 0.364517 erythrocyte volume (OBA:0003460)
 PMID:32888494
GWAS642586_H GCST90002385 High light scatter reticulocyte count 408,112 British individuals TAC 0.00205599999999995 2E-27 26.699 rs147049568 0.30567223 reticulocyte count (EFO:0007986)
 PMID:32888494
GWAS643686_H GCST90002386 High light scatter reticulocyte percentage of red cells 408,112 British individuals TAC 0.00205599999999995 5E-32 31.302 rs147049568 0.33246335 reticulocyte measurement (EFO:0010700)
 PMID:32888494
GWAS1717242_H GCST90025963 Mean corpuscular volume 444,035 European ancestry individuals ? NR 3E-55 54.523 rs147049568 0.318128 erythrocyte volume (OBA:0003460)
 PMID:34226706
GWAS1175146_H GCST90002390 Mean corpuscular hemoglobin 408,112 British individuals TAC 0.00206499999999998 3E-49 48.523 rs147049568 0.3984786 mean corpuscular hemoglobin (EFO:0004527)
 PMID:32888494
GWAS1175834_H GCST90002391 Mean corpuscular hemoglobin concentration 408,112 British individuals TAC 0.00206399999999995 7E-13 12.155 rs147049568 0.224911 mean corpuscular hemoglobin concentration (EFO:0004528)
 PMID:32888494
GWAS1718226_H GCST90025971 Immature fraction of reticulocytes 438,154 European ancestry individuals ? NR 5E-13 12.302 rs147049568 0.164024 reticulocyte amount (OBA:0002272)
 PMID:34226706
GWAS1202153_H GCST90002406 Reticulocyte fraction of red cells 408,112 British individuals TAC 0.00206099999999998 4E-34 33.398 rs147049568 0.3453226 reticulocyte measurement (EFO:0010700)
 PMID:32888494
GWAS1202685_H GCST90002405 Reticulocyte count 408,112 British individuals TAC 0.00206200000000001 1E-27 27 rs147049568 0.3092151 reticulocyte count (EFO:0007986)
 PMID:32888494
GWAS1203826_H GCST90002404 Red cell distribution width 408,112 British individuals TAC 0.00206700000000004 4E-13 12.398 rs147049568 0.20296459 Red cell distribution width (EFO:0009188)
 PMID:32888494
GWAS1211405_H GCST90025970 High light scatter reticulocyte count 437,723 European ancestry individuals ? NR 6E-37 36.222 rs147049568 0.285313 reticulocyte count (EFO:0007986)
 PMID:34226706
GWAS1212523_H GCST90025972 Reticulocyte count 437,291 European ancestry individuals ? NR 8E-35 34.097 rs147049568 0.284311 reticulocyte count (EFO:0007986)
 PMID:34226706
GWAS1212958_H GCST90025962 Mean corpuscular hemoglobin concentration 443,081 European ancestry individuals ? NR 8E-80 79.097 rs147049568 0.395292 mean corpuscular hemoglobin concentration (EFO:0004528)
 PMID:34226706
GWAS1213165_H GCST90025969 Hemoglobin levels 445,373 European ancestry individuals ? NR 2E-9 8.699 rs147049568 0.127384 hemoglobin measurement (EFO:0004509)
 PMID:34226706
GWAS1214422_H GCST90025964 Red blood cell count 445,305 European ancestry individuals ? NR 2E-12 11.699 rs147049568 0.160974 erythrocyte count (EFO:0004305)
 PMID:34226706
GWAS1217230_H GCST90025988 Red cell distribution width 441,263 European ancestry individuals ? NR 6E-24 23.222 rs147049568 0.231037 Red cell distribution width (EFO:0009188)
 PMID:34226706
1 to 16 of 16 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90002392 GWAS Catalog

Note Type Note Reference