GWAS1365654_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1365654_H (lung adenocarcinoma QTL GWAS1365654 (human)) Homo sapiens

Symbol: GWAS1365654_H
Name: lung adenocarcinoma QTL GWAS1365654 (human)
RGD ID: 597269580
Trait: lung adenocarcinoma
LOD Score: Not Available
P Value: 2.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386410,848 - 410,849RGD_MAPPER_PIPELINEGRCh38
GRCh376410,848 - 410,849RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1365654_HHumanlung adenocarcinoma  IAGPrs2316515405850206 GWAS_CATALOGPMID:35915169

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1365654_HHumanLung adenocarcinoma  IAGPrs2316515405850206 GWAS_CATALOGPMID:35915169
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1365654_HHumanlung adenocarcinoma  IAGPrs2316515405850206 GWAS_CATALOGPMID:35915169

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1317594IRF4interferon regulatory factor 46391752411443Human


Peak: (rs2316515)
Human AssemblyChrPosition (strand)Source
GRCh386410,848 - 410,849RGD_MAPPER_PIPELINE


1 to 9 of 9 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289408BW324_HBody weight QTL 324 (human)3.150.0001Body fat amount6120803913Human
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
597269580GWAS1365654_Hlung adenocarcinoma QTL GWAS1365654 (human)0.0000002lung adenocarcinoma6410848410849Human
597068656GWAS1164730_Hlung adenocarcinoma QTL GWAS1164730 (human)0.0000001lung adenocarcinoma6410848410849Human
2289435BMD4_HBone mineral density QTL 4 (human)3.150.0001Bone mineral density6120803913Human
2292824PRSTS5_HProstate tumor susceptibility QTL 5 (human)Prostate tumor susceptibility6119232373Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human
597107629GWAS1203703_Hlymphoid leukemia QTL GWAS1203703 (human)1e-08lymphoid leukemia6410848410849Human
1643495BW291_HBody Weight QTL 291 (human)2.13Body weightBMI6119321359Human

1 to 9 of 9 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1365654_H GCST90134662 Lung adenocarcinoma 9,791 European ancestry cases, 23,173 European ancestry controls, 4,630 East Asian ancestry cases, 5,372 East Asian ancestry controls, 844 African American cases, 3,774 African American controls G NR 2E-7 6.699 rs2316515 0.03 lung adenocarcinoma (EFO:0000571)
 PMID:35915169
GWAS1706744_H GCST90006898 Epstein-Barr virus EA-D antibody levels 7,763 White British ancestry individuals A 0.388 4E-8 7.398 rs2316515 0.09 obsolete_anti-epstein barr virus antibody measurement (EFO:0009273)
 PMID:33204752
GWAS1164730_H GCST004744 Lung adenocarcinoma 11,273 European ancestry cases, 55,483 European ancestry controls G 0.589206075 1E-7 7 rs2316515 1.0899395 lung adenocarcinoma (EFO:0000571)
 PMID:28604730
GWAS1203703_H GCST90011814 Lymphocytic leukemia 852 European ancestry cases, 410,350 European ancestry controls G NR 1E-8 8 rs2316515 1.3469827 lymphoid leukemia (EFO:0004289)
 PMID:32887889
Database
Acc Id
Source(s)
GWAS Catalog GCST90134662 GWAS Catalog

Note Type Note Reference