GWAS1179828_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1179828_H (white matter hyperintensity measurement QTL GWAS1179828 (human)) Homo sapiens

Symbol: GWAS1179828_H
Name: white matter hyperintensity measurement QTL GWAS1179828 (human)
RGD ID: 597083754
Trait: white matter hyperintensity measurement
LOD Score: Not Available
P Value: 8.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3861,129,965 - 1,129,966RGD_MAPPER_PIPELINEGRCh38
GRCh3761,130,200 - 1,130,201RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1179828_HHumanwhite matter hyperintensity measurement  IAGPrs11751975405850206 GWAS_CATALOGPMID:32517579

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs11751975)
Human AssemblyChrPosition (strand)Source
GRCh3861,129,965 - 1,129,966RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289408BW324_HBody weight QTL 324 (human)3.150.0001Body fat amount6120803913Human
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
2289435BMD4_HBone mineral density QTL 4 (human)3.150.0001Bone mineral density6120803913Human
2292824PRSTS5_HProstate tumor susceptibility QTL 5 (human)Prostate tumor susceptibility6119232373Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human
597083754GWAS1179828_Hwhite matter hyperintensity measurement QTL GWAS1179828 (human)0.000008white matter hyperintensity measurement611299651129966Human
1643495BW291_HBody Weight QTL 291 (human)2.13Body weightBMI6119321359Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1179828_H GCST010727 Deep white matter hyperintensities 16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals T 0.8886 0.000008 5.097 rs11751975 0.0378 white matter hyperintensity measurement (EFO:0005665)
 PMID:32517579
Database
Acc Id
Source(s)
GWAS Catalog GCST010727 GWAS Catalog

Note Type Note Reference