TXNDC5 (thioredoxin domain containing 5) - Rat Genome Database

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Gene: TXNDC5 (thioredoxin domain containing 5) Homo sapiens
Analyze
Symbol: TXNDC5
Name: thioredoxin domain containing 5
RGD ID: 1313292
HGNC Page HGNC:21073
Description: Predicted to enable protein disulfide isomerase activity and protein-disulfide reductase activity. Predicted to be involved in protein folding. Located in extracellular exosome.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: EndoPDI; endoplasmic reticulum protein ERp46; endoplasmic reticulum resident protein 46; endothelial protein disulphide isomerase; ER protein 46; ERP46; FLJ21789; Hcc-2; HCC2; MGC3178; PDIA15; protein disulfide isomerase family A, member 15; STRF8; thioredoxin domain containing 5 (endoplasmic reticulum); thioredoxin domain-containing protein 5; thioredoxin related protein; thioredoxin-like protein p46; UNQ364
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3867,881,517 - 7,910,788 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl67,881,517 - 7,910,788 (-)EnsemblGRCh38hg38GRCh38
GRCh3767,881,750 - 7,911,021 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3667,826,749 - 8,009,596 (-)NCBINCBI36Build 36hg18NCBI36
Build 3467,826,752 - 7,856,040NCBI
Celera69,111,188 - 9,140,484 (-)NCBICelera
Cytogenetic Map6p24.3NCBI
HuRef67,758,572 - 7,787,963 (-)NCBIHuRef
CHM1_167,883,601 - 7,913,171 (-)NCBICHM1_1
T2T-CHM13v2.067,750,266 - 7,779,537 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
TXNDC5HumanCOVID-19  HEP 32716422mRNA:decreased expression:antibody secreting B cells (human)RGD 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
TXNDC5HumanExperimental Arthritis  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:23326410
TXNDC5HumanNeoplasm Metastasis  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:17085005
TXNDC5HumanProstatic Neoplasms  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:17199135
TXNDC5Humanrheumatoid arthritis  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:23326410

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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
TXNDC5Human(+)-schisandrin B multiple interactionsISOTxndc5 (Rattus norvegicus)6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of TXNDC5 mRNA]CTDPMID:31150632
TXNDC5Human1,2-dimethylhydrazine increases expressionISOTxndc5 (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of TXNDC5 mRNACTDPMID:22206623
TXNDC5Human1,2-dimethylhydrazine multiple interactionsISOTxndc5 (Mus musculus)6480464Folic Acid inhibits the reaction [1 and 2-Dimethylhydrazine results in increased expression of TXNDC5 mRNA]CTDPMID:22206623
TXNDC5Human17beta-estradiol increases expressionISOTxndc5 (Mus musculus)6480464Estradiol results in increased expression of TXNDC5 mRNACTDPMID:39298647
TXNDC5Human17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of TXNDC5 mRNACTDPMID:31614463
TXNDC5Human2,2',4,4'-Tetrabromodiphenyl ether increases expressionISOTxndc5 (Rattus norvegicus)64804642 more ...CTDPMID:21394737
TXNDC5Human2,3',4,4',5-Pentachlorobiphenyl increases expressionISOTxndc5 (Mus musculus)64804642 more ...CTDPMID:31388691
TXNDC5Human2,3,7,8-tetrachlorodibenzodioxine affects expressionISOTxndc5 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of TXNDC5 mRNACTDPMID:21570461
TXNDC5Human2,3,7,8-tetrachlorodibenzodioxine affects expressionISOTxndc5 (Rattus norvegicus)6480464Tetrachlorodibenzodioxin affects the expression of TXNDC5 mRNACTDPMID:34747641
TXNDC5Human2,4,6-tribromophenol increases expressionEXP 64804642 more ...CTDPMID:31675489
TXNDC5Human2,4-dibromophenyl 2,4,5-tribromophenyl ether affects expressionISOTxndc5 (Mus musculus)64804642 more ...CTDPMID:38648751
TXNDC5Human2,6-dimethoxyphenol multiple interactionsEXP 6480464[Sodium Chloride co-treated with pyrogallol 1 and 3-dimethyl ether] results in decreased expression of TXNDC5 proteinCTDPMID:38598786
TXNDC5Human3,3',5,5'-tetrabromobisphenol A increases expressionEXP 6480464tetrabromobisphenol A results in increased expression of TXNDC5 proteinCTDPMID:31675489
TXNDC5Human3,4-methylenedioxymethamphetamine decreases expressionISOTxndc5 (Mus musculus)6480464N-Methyl-3 and 4-methylenedioxyamphetamine results in decreased expression of TXNDC5 mRNACTDPMID:26251327
TXNDC5Human4,4'-diaminodiphenylmethane increases expressionISOTxndc5 (Mus musculus)64804644 and 4'-diaminodiphenylmethane results in increased expression of TXNDC5 mRNACTDPMID:18648102
TXNDC5Human4,4'-sulfonyldiphenol increases expressionISOTxndc5 (Mus musculus)6480464bisphenol S results in increased expression of TXNDC5 mRNACTDPMID:39298647
TXNDC5Human4,4'-sulfonyldiphenol multiple interactionsISOTxndc5 (Rattus norvegicus)6480464[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of TXNDC5 mRNACTDPMID:36041667
TXNDC5Human4,4'-sulfonyldiphenol increases expressionEXP 6480464bisphenol S results in increased expression of TXNDC5 proteinCTDPMID:34186270
TXNDC5Human6-propyl-2-thiouracil decreases expressionISOTxndc5 (Rattus norvegicus)6480464Propylthiouracil results in decreased expression of TXNDC5 mRNACTDPMID:36843608
TXNDC5Humanaflatoxin B1 decreases expressionISOTxndc5 (Mus musculus)6480464Aflatoxin B1 results in decreased expression of TXNDC5 mRNACTDPMID:19770486

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Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
TXNDC5Humannegative regulation of apoptotic process involved_inTAS 150520179 PMID:16130169UniProtPMID:16130169
TXNDC5Humanprotein folding involved_inIBAPANTHER:PTN005231188 more ...150520179 GO_CentralGO_REF:0000033

Cellular Component
1 to 13 of 13 rows

  
Object Symbol
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Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
TXNDC5Humanazurophil granule lumen located_inTAS 150520179 ReactomeReactome:R-HSA-6798751
TXNDC5Humancytoplasm located_inIEAARBA:ARBA00026971150520179 UniProtGO_REF:0000117
TXNDC5Humanendomembrane system located_inIEAARBA:ARBA00028953150520179 UniProtGO_REF:0000117
TXNDC5Humanendoplasmic reticulum located_inIEAUniProtKB-KW:KW-0256150520179 UniProtGO_REF:0000043
TXNDC5Humanendoplasmic reticulum is_active_inIBAFB:FBgn0030329 more ...150520179 GO_CentralGO_REF:0000033
TXNDC5Humanendoplasmic reticulum located_inTAS 150520179 PMID:16130169UniProtPMID:16130169
TXNDC5Humanendoplasmic reticulum lumen located_inIEAUniProtKB:Q91W90 and ensembl:ENSMUSP00000041839150520179 EnsemblGO_REF:0000107
TXNDC5Humanendoplasmic reticulum lumen located_inISSUniProtKB:Q91W90150520179 UniProtGO_REF:0000024
TXNDC5Humanendoplasmic reticulum lumen located_inIEAUniProtKB-SubCell:SL-0096150520179 UniProtGO_REF:0000044
TXNDC5Humanextracellular exosome located_inHDA 150520179 PMID:19199708 and PMID:23533145UniProtPMID:19199708 and PMID:23533145
TXNDC5Humanextracellular region located_inTAS 150520179 ReactomeReactome:R-HSA-6798751
TXNDC5Humanintracellular membrane-bounded organelle located_inIEAARBA:ARBA00029085150520179 UniProtGO_REF:0000117
TXNDC5Humanlysosomal lumen located_inTAS 150520179 ReactomeReactome:R-HSA-429815
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Molecular Function
1 to 12 of 12 rows

  
1 to 12 of 12 rows

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
TXNDC5HumanEndoplasmic Reticulum-associated degradation pathway  IEA 6907045 KEGGhsa:04141

#
Reference Title
Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Immune cell profiling of COVID-19 patients in the recovery stage by single-cell sequencing. Wen W, etal., Cell Discov. 2020 May 4;6:31. doi: 10.1038/s41421-020-0168-9. eCollection 2020.
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PMID:11031247   PMID:11252894   PMID:12477932   PMID:12878160   PMID:12930873   PMID:12963716   PMID:12975309   PMID:14574404   PMID:14702039   PMID:14744259   PMID:15489334   PMID:16130169  
PMID:16574106   PMID:17895523   PMID:19199708   PMID:19367581   PMID:19694819   PMID:19834535   PMID:19887585   PMID:19906073   PMID:20074551   PMID:20157732   PMID:21057456   PMID:21145461  
PMID:21461837   PMID:21516116   PMID:21617212   PMID:21801346   PMID:21832049   PMID:21873635   PMID:22190034   PMID:22505402   PMID:22810586   PMID:22863883   PMID:22939629   PMID:23245351  
PMID:23326410   PMID:23376096   PMID:23533145   PMID:23713588   PMID:23752268   PMID:24023338   PMID:24100949   PMID:24103565   PMID:24457600   PMID:24462249   PMID:24594673   PMID:24711643  
PMID:25416956   PMID:25500540   PMID:25609649   PMID:25921289   PMID:26186194   PMID:26344197   PMID:26496610   PMID:26638075   PMID:26810069   PMID:27173435   PMID:27375898   PMID:27432908  
PMID:27576135   PMID:27684187   PMID:27777122   PMID:27880917   PMID:28514442   PMID:28515276   PMID:28581483   PMID:28603283   PMID:28604976   PMID:28655764   PMID:28675297   PMID:29131315  
PMID:29180619   PMID:29229926   PMID:29247155   PMID:29507755   PMID:29535165   PMID:29749460   PMID:29784879   PMID:29845934   PMID:29892012   PMID:30021884   PMID:30522366   PMID:30575818  
PMID:30884312   PMID:30948266   PMID:31056421   PMID:31091453   PMID:31182584   PMID:31324722   PMID:31331361   PMID:31343991   PMID:31586073   PMID:32149426   PMID:32203420   PMID:32296183  
PMID:32344865   PMID:32457219   PMID:32572027   PMID:32687490   PMID:32707033   PMID:32780723   PMID:32788342   PMID:32838362   PMID:32848143   PMID:32913203   PMID:32941674   PMID:32989298  
PMID:32994395   PMID:33022573   PMID:33187986   PMID:33239621   PMID:33545068   PMID:33957083   PMID:33961781   PMID:34079125   PMID:34189442   PMID:34349018   PMID:34535262   PMID:34606982  
1 to 10 of 13 rows



TXNDC5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3867,881,517 - 7,910,788 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl67,881,517 - 7,910,788 (-)EnsemblGRCh38hg38GRCh38
GRCh3767,881,750 - 7,911,021 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3667,826,749 - 8,009,596 (-)NCBINCBI36Build 36hg18NCBI36
Build 3467,826,752 - 7,856,040NCBI
Celera69,111,188 - 9,140,484 (-)NCBICelera
Cytogenetic Map6p24.3NCBI
HuRef67,758,572 - 7,787,963 (-)NCBIHuRef
CHM1_167,883,601 - 7,913,171 (-)NCBICHM1_1
T2T-CHM13v2.067,750,266 - 7,779,537 (-)NCBIT2T-CHM13v2.0
Txndc5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391338,684,242 - 38,712,800 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1338,684,055 - 38,712,800 (-)EnsemblGRCm39 Ensembl
GRCm381338,500,266 - 38,528,824 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1338,500,079 - 38,528,824 (-)EnsemblGRCm38mm10GRCm38
MGSCv371338,592,144 - 38,620,329 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361338,507,741 - 38,535,926 (-)NCBIMGSCv36mm8
Celera1339,616,452 - 39,644,639 (-)NCBICelera
Cytogenetic Map13A3.3NCBI
cM Map1318.27NCBI
Txndc5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81726,495,467 - 26,523,608 (+)NCBIGRCr8
mRatBN7.21726,289,880 - 26,318,025 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1726,289,880 - 26,318,025 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1726,147,696 - 26,175,806 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01727,751,281 - 27,779,392 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01726,096,561 - 26,124,693 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01726,925,828 - 26,953,981 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1726,925,828 - 26,953,970 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01728,841,031 - 28,869,184 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41732,350,902 - 32,378,321 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11732,353,771 - 32,381,879 (+)NCBI
Celera1725,925,724 - 25,953,865 (+)NCBICelera
Cytogenetic Map17p12NCBI
Txndc5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554656,033,968 - 6,053,769 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554656,034,006 - 6,053,779 (+)NCBIChiLan1.0ChiLan1.0
TXNDC5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2522,522,351 - 22,551,966 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1618,519,349 - 18,548,868 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v067,720,141 - 7,749,672 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.168,001,831 - 8,025,284 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl68,001,831 - 8,027,408 (-)Ensemblpanpan1.1panPan2
TXNDC5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1357,834,135 - 7,854,836 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl357,834,331 - 7,854,852 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha357,841,150 - 7,865,571 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0357,916,645 - 7,942,933 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1357,773,396 - 7,798,132 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0357,799,357 - 7,825,378 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0359,132,754 - 9,158,894 (-)NCBIUU_Cfam_GSD_1.0
Txndc5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494616,410,650 - 16,438,740 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365344,679,631 - 4,706,309 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365344,679,636 - 4,706,682 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TXNDC5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl75,210,064 - 5,236,812 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.175,210,192 - 5,236,857 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.275,314,558 - 5,323,063 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TXNDC5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11764,250,319 - 64,278,102 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1764,250,359 - 64,281,195 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660447,873,712 - 7,902,752 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Txndc5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475617,694,205 - 17,742,726 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475617,611,990 - 17,742,726 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in TXNDC5
53 total Variants

1 to 10 of 67 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 6p25.3-24.1(chr6:164360-13339881)x3 copy number gain See cases [RCV000134022] Chr6:164360..13339881 [GRCh38]
Chr6:164360..13340113 [GRCh37]
Chr6:109360..13448092 [NCBI36]
Chr6:6p25.3-24.1
pathogenic
GRCh38/hg38 6p25.3-24.3(chr6:163083-9525496)x3 copy number gain See cases [RCV000136567] Chr6:163083..9525496 [GRCh38]
Chr6:163083..9525729 [GRCh37]
Chr6:108083..9633715 [NCBI36]
Chr6:6p25.3-24.3
pathogenic
GRCh38/hg38 6p25.2-24.1(chr6:4068792-13267799)x1 copy number loss See cases [RCV000136132] Chr6:4068792..13267799 [GRCh38]
Chr6:4069026..13268031 [GRCh37]
Chr6:4014025..13376010 [NCBI36]
Chr6:6p25.2-24.1
pathogenic
GRCh38/hg38 6p25.3-22.3(chr6:152634-15732163)x3 copy number gain See cases [RCV000138121] Chr6:152634..15732163 [GRCh38]
Chr6:152634..15732394 [GRCh37]
Chr6:97634..15840373 [NCBI36]
Chr6:6p25.3-22.3
likely benign
GRCh38/hg38 6p25.2-21.33(chr6:3224310-30657190)x3 copy number gain See cases [RCV000138956] Chr6:3224310..30657190 [GRCh38]
Chr6:3224544..30624967 [GRCh37]
Chr6:3169543..30732946 [NCBI36]
Chr6:6p25.2-21.33
pathogenic
GRCh38/hg38 6p25.3-22.3(chr6:155807-17058414)x3 copy number gain See cases [RCV000140307] Chr6:155807..17058414 [GRCh38]
Chr6:155807..17058645 [GRCh37]
Chr6:100807..17166624 [NCBI36]
Chr6:6p25.3-22.3
pathogenic
GRCh38/hg38 6p25.3-24.2(chr6:156974-11550817)x3 copy number gain See cases [RCV000142295] Chr6:156974..11550817 [GRCh38]
Chr6:156974..11551050 [GRCh37]
Chr6:101974..11659036 [NCBI36]
Chr6:6p25.3-24.2
likely pathogenic
GRCh38/hg38 6p25.2-22.3(chr6:2862640-16697788)x1 copy number loss See cases [RCV000142435] Chr6:2862640..16697788 [GRCh38]
Chr6:2862874..16698019 [GRCh37]
Chr6:2807873..16805998 [NCBI36]
Chr6:6p25.2-22.3
pathogenic
GRCh38/hg38 6p25.3-23(chr6:152634-14417003)x3 copy number gain See cases [RCV000143334] Chr6:152634..14417003 [GRCh38]
Chr6:152634..14417234 [GRCh37]
Chr6:97634..14525213 [NCBI36]
Chr6:6p25.3-23
pathogenic
GRCh38/hg38 6p25.3-24.1(chr6:156974-13081201)x3 copy number gain See cases [RCV000143698] Chr6:156974..13081201 [GRCh38]
Chr6:156974..13081433 [GRCh37]
Chr6:101974..13189419 [NCBI36]
Chr6:6p25.3-24.1
likely pathogenic
1 to 10 of 67 rows

Predicted Target Of
Summary Value
Count of predictions:3091
Count of miRNA genes:788
Interacting mature miRNAs:883
Transcripts:ENST00000379757, ENST00000460138, ENST00000469459, ENST00000473453, ENST00000475802, ENST00000539054
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 19 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597476412GWAS1572486_Hblood protein measurement QTL GWAS1572486 (human)3e-21blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)678832357883236Human
2289408BW324_HBody weight QTL 324 (human)3.150.0001Body fat amount6120803913Human
597362425GWAS1458499_Hblood protein measurement QTL GWAS1458499 (human)2e-12blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)678995037899504Human
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
597445019GWAS1541093_Hthioredoxin domain-containing protein 5 measurement QTL GWAS1541093 (human)5e-27thioredoxin domain-containing protein 5 measurement678832357883236Human
1643377BW325_HBody weight QTL 325 (human)2.320.0005Body fat amount6691196032911960Human
1643569GLUCO21_HGlucose level QTL 21 (human)0.021Glucose levelnon-insulin-dependent6691196032911960Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human
597322484GWAS1418558_Hlevel of thioredoxin domain-containing protein 5 in blood serum QTL GWAS1418558 (human)3e-12level of thioredoxin domain-containing protein 5 in blood serum678819197881920Human

1 to 10 of 19 rows
A002L04  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3767,881,912 - 7,882,028UniSTSGRCh37
Build 3667,826,911 - 7,827,027RGDNCBI36
Celera69,111,350 - 9,111,466RGD
Cytogenetic Map6p24.3UniSTS
Cytogenetic Map6p24-p23UniSTS
Cytogenetic Map6pUniSTS
HuRef67,758,990 - 7,759,106UniSTS
GeneMap99-GB4 RH Map640.68UniSTS
GeneMap99-GB4 RH Map643.85UniSTS
Whitehead-RH Map665.7UniSTS
WI-13193  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3767,881,799 - 7,881,902UniSTSGRCh37
Build 3667,826,798 - 7,826,901RGDNCBI36
Celera69,111,237 - 9,111,340RGD
Cytogenetic Map6pUniSTS
Cytogenetic Map6p24.3UniSTS
Cytogenetic Map6p24-p23UniSTS
HuRef67,758,888 - 7,758,980UniSTS
GeneMap99-GB4 RH Map640.68UniSTS
Whitehead-RH Map665.8UniSTS
RH26506  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3767,890,998 - 7,891,181UniSTSGRCh37
Build 3667,835,997 - 7,836,180RGDNCBI36
Celera69,120,439 - 9,120,622RGD
Cytogenetic Map6p24.3UniSTS
HuRef67,768,075 - 7,768,258UniSTS
NIB594  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3767,881,839 - 7,882,061UniSTSGRCh37
Build 3667,826,838 - 7,827,060RGDNCBI36
Celera69,111,277 - 9,111,499RGD
Cytogenetic Map6p24-p23UniSTS
Cytogenetic Map6p24.3UniSTS
Stanford-G3 RH Map6247.0UniSTS
GeneMap99-G3 RH Map6247.0UniSTS
RH46813  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3767,891,006 - 7,891,131UniSTSGRCh37
Build 3667,836,005 - 7,836,130RGDNCBI36
Celera69,120,447 - 9,120,572RGD
Cytogenetic Map6p24.3UniSTS
HuRef67,768,083 - 7,768,208UniSTS
GeneMap99-GB4 RH Map642.91UniSTS
NCBI RH Map6105.1UniSTS
AL021859  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3767,884,815 - 7,884,972UniSTSGRCh37
Build 3667,829,814 - 7,829,971RGDNCBI36
Celera69,114,253 - 9,114,410RGD
Cytogenetic Map6p24.3UniSTS
HuRef67,761,889 - 7,762,046UniSTS
SHGC-33534  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3767,890,904 - 7,891,028UniSTSGRCh37
Build 3667,835,903 - 7,836,027RGDNCBI36
Celera69,120,345 - 9,120,469RGD
Cytogenetic Map6p24.3UniSTS
HuRef67,767,981 - 7,768,105UniSTS
Stanford-G3 RH Map6235.0UniSTS
GeneMap99-GB4 RH Map643.85UniSTS
Whitehead-RH Map661.3UniSTS
NCBI RH Map6112.7UniSTS
GeneMap99-G3 RH Map6235.0UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2250 4971 1726 2351 6 624 1948 465 2270 7297 6463 53 3731 1 852 1744 1617 174 1


1 to 21 of 21 rows
RefSeq Transcripts NM_001145549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_030810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AJ440721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK025006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK098089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK315598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL133541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL833008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL834423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY326464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY358646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC001199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC088728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF726049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ181185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU855393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GQ891501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 21 of 21 rows

Ensembl Acc Id: ENST00000379757   ⟹   ENSP00000369081
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl67,881,517 - 7,910,788 (-)Ensembl
Ensembl Acc Id: ENST00000460138
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl67,881,517 - 7,889,445 (-)Ensembl
Ensembl Acc Id: ENST00000469459
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl67,895,155 - 7,900,242 (-)Ensembl
Ensembl Acc Id: ENST00000473453   ⟹   ENSP00000420784
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl67,883,144 - 7,910,077 (-)Ensembl
Ensembl Acc Id: ENST00000475802
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl67,883,155 - 7,888,961 (-)Ensembl
RefSeq Acc Id: NM_001145549   ⟹   NP_001139021
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3867,881,517 - 7,910,077 (-)NCBI
GRCh3767,881,483 - 7,911,047 (-)ENTREZGENE
HuRef67,758,572 - 7,787,963 (-)ENTREZGENE
CHM1_167,883,601 - 7,912,434 (-)NCBI
T2T-CHM13v2.067,750,266 - 7,778,826 (-)NCBI
Sequence:
RefSeq Acc Id: NM_030810   ⟹   NP_110437
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3867,881,517 - 7,910,788 (-)NCBI
GRCh3767,881,483 - 7,911,047 (-)NCBI
Build 3667,826,749 - 7,856,040 (-)NCBI Archive
HuRef67,758,572 - 7,787,963 (-)ENTREZGENE
CHM1_167,883,601 - 7,913,171 (-)NCBI
T2T-CHM13v2.067,750,266 - 7,779,537 (-)NCBI
Sequence:
RefSeq Acc Id: NP_110437   ⟸   NM_030810
- Peptide Label: isoform 1 precursor
- UniProtKB: Q8TCT2 (UniProtKB/Swiss-Prot),   Q8ND33 (UniProtKB/Swiss-Prot),   Q5TCQ0 (UniProtKB/Swiss-Prot),   B2RDM2 (UniProtKB/Swiss-Prot),   Q9BVH9 (UniProtKB/Swiss-Prot),   Q8NBS9 (UniProtKB/Swiss-Prot),   Q658S9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001139021   ⟸   NM_001145549
- Peptide Label: isoform 3
- UniProtKB: A0A024QZV0 (UniProtKB/TrEMBL),   Q86UY0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000369081   ⟸   ENST00000379757
Ensembl Acc Id: ENSP00000420784   ⟸   ENST00000473453
Thioredoxin

Name Modeler Protein Id AA Range Protein Structure
AF-Q8NBS9-F1-model_v2 AlphaFold Q8NBS9 1-432 view protein structure

RGD ID:6804904
Promoter ID:HG_KWN:52257
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3,   Lymphoblastoid
Transcripts:OTTHUMT00000039793
Position:
Human AssemblyChrPosition (strand)Source
Build 3667,833,991 - 7,835,642 (-)MPROMDB
RGD ID:6804905
Promoter ID:HG_KWN:52258
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000039792,   UC010JNZ.1,   UC010JOA.1
Position:
Human AssemblyChrPosition (strand)Source
Build 3667,855,166 - 7,856,782 (-)MPROMDB
RGD ID:6871988
Promoter ID:EPDNEW_H9159
Type:initiation region
Name:TXNDC5_4
Description:thioredoxin domain containing 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H9161  EPDNEW_H9160  EPDNEW_H9162  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh3867,884,415 - 7,884,475EPDNEW
RGD ID:6871994
Promoter ID:EPDNEW_H9160
Type:initiation region
Name:TXNDC5_3
Description:thioredoxin domain containing 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H9159  EPDNEW_H9161  EPDNEW_H9162  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh3867,895,104 - 7,895,164EPDNEW
RGD ID:6871992
Promoter ID:EPDNEW_H9161
Type:initiation region
Name:TXNDC5_2
Description:thioredoxin domain containing 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H9159  EPDNEW_H9160  EPDNEW_H9162  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh3867,904,590 - 7,904,650EPDNEW
RGD ID:6871996
Promoter ID:EPDNEW_H9162
Type:initiation region
Name:TXNDC5_1
Description:thioredoxin domain containing 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H9159  EPDNEW_H9161  EPDNEW_H9160  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh3867,910,788 - 7,910,848EPDNEW
RGD ID:6804483
Promoter ID:HG_KWN:52262
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000397456,   ENST00000397457,   NM_201280,   UC003MXW.1,   UC010JOB.1,   UC010JOC.1
Position:
Human AssemblyChrPosition (strand)Source
Build 3668,009,354 - 8,009,854 (-)MPROMDB


1 to 40 of 42 rows
Database
Acc Id
Source(s)
COSMIC TXNDC5 COSMIC
Ensembl Genes ENSG00000239264 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000379757 ENTREZGENE
  ENST00000379757.9 UniProtKB/Swiss-Prot
  ENST00000473453 ENTREZGENE
  ENST00000473453.2 UniProtKB/Swiss-Prot
Gene3D-CATH Glutaredoxin UniProtKB/Swiss-Prot
GTEx ENSG00000239264 GTEx
HGNC ID HGNC:21073 ENTREZGENE
Human Proteome Map TXNDC5 Human Proteome Map
InterPro Disulphide_isomerase UniProtKB/Swiss-Prot
  PDI UniProtKB/Swiss-Prot
  Thioredoxin-like_sf UniProtKB/Swiss-Prot
  Thioredoxin_CS UniProtKB/Swiss-Prot
  Thioredoxin_domain UniProtKB/Swiss-Prot
KEGG Report hsa:81567 UniProtKB/Swiss-Prot
NCBI Gene 81567 ENTREZGENE
OMIM 616412 OMIM
PANTHER PROTEIN DISULFIDE-ISOMERASE C17H9.14C-RELATED UniProtKB/Swiss-Prot
  THIOREDOXIN DOMAIN-CONTAINING PROTEIN 5 UniProtKB/Swiss-Prot
Pfam Thioredoxin UniProtKB/Swiss-Prot
PharmGKB PA134992492 PharmGKB
PRINTS THIOREDOXIN UniProtKB/Swiss-Prot
PROSITE ER_TARGET UniProtKB/Swiss-Prot
  THIOREDOXIN_1 UniProtKB/Swiss-Prot
  THIOREDOXIN_2 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF52833 UniProtKB/Swiss-Prot
UniProt A0A024QZV0 ENTREZGENE, UniProtKB/TrEMBL
  B2RDM2 ENTREZGENE
  Q5TCQ0 ENTREZGENE
  Q658S9 ENTREZGENE, UniProtKB/TrEMBL
  Q86UY0 ENTREZGENE, UniProtKB/TrEMBL
  Q8NBS9 ENTREZGENE
  Q8ND33 ENTREZGENE
  Q8TCT2 ENTREZGENE
  Q9BVH9 ENTREZGENE
  TXND5_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary B2RDM2 UniProtKB/Swiss-Prot
  Q5TCQ0 UniProtKB/Swiss-Prot
  Q8ND33 UniProtKB/Swiss-Prot
1 to 40 of 42 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-12 TXNDC5  thioredoxin domain containing 5    thioredoxin domain containing 5 (endoplasmic reticulum)  Symbol and/or name change 5135510 APPROVED