GWAS1386102_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1386102_H (remnant cholesterol measurement QTL GWAS1386102 (human)) Homo sapiens

Symbol: GWAS1386102_H
Name: remnant cholesterol measurement QTL GWAS1386102 (human)
RGD ID: 597290028
Trait: remnant cholesterol measurement
LOD Score: Not Available
P Value: 1.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38616,126,442 - 16,126,443RGD_MAPPER_PIPELINEGRCh38
GRCh37616,126,673 - 16,126,674RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1386102_HHumanremnant cholesterol measurement  IAGPrs7741879405850206 GWAS_CATALOGPMID:38448586

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs7741879)
Human AssemblyChrPosition (strand)Source
GRCh38616,126,442 - 16,126,443RGD_MAPPER_PIPELINE


1 to 10 of 16 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289408BW324_HBody weight QTL 324 (human)3.150.0001Body fat amount6120803913Human
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
1643377BW325_HBody weight QTL 325 (human)2.320.0005Body fat amount6691196032911960Human
1643569GLUCO21_HGlucose level QTL 21 (human)0.021Glucose levelnon-insulin-dependent6691196032911960Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human
597289331GWAS1385405_Hlow density lipoprotein cholesterol measurement, free cholesterol:total lipids ratio QTL GWAS1385405 (human)2e-13low density lipoprotein cholesterol measurement, free cholesterol:total lipids ratioblood low density lipoprotein cholesterol level (CMO:0000053)61612644216126443Human
597289975GWAS1386049_Hphospholipids in small LDL measurement QTL GWAS1386049 (human)1e-12blood LDL phospholipid amount (VT:0010505)61612644216126443Human
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human
597290028GWAS1386102_Hremnant cholesterol measurement QTL GWAS1386102 (human)1e-10remnant cholesterol measurement61612644216126443Human

1 to 10 of 16 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1386102_H GCST90302074 Remnant cholesterol (non-HDL, non-LDL -cholesterol) 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.4736 1E-10 10 rs7741879 0.0264 remnant cholesterol measurement (EFO:0010815)
 PMID:38448586
GWAS1755815_H GCST90302157 Concentration of very small VLDL particles 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.4736 2E-9 8.699 rs7741879 0.0247 blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:38448586
GWAS1385208_H GCST90301946 Apolipoprotein B levels 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.4736 5E-12 11.302 rs7741879 0.0284 apolipoprotein B measurement (EFO:0004615)
 PMID:38448586
GWAS1385405_H GCST90302096 Free cholesterol to total lipids ratio in small LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.4735 2E-13 12.699 rs7741879 0.0293 low density lipoprotein cholesterol measurement (EFO:0004611)
free cholesterol:total lipids ratio (EFO:0020945)
 PMID:38448586
GWAS1386049_H GCST90302099 Phospholipids in small LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.4736 1E-12 12 rs7741879 0.0292 phospholipids in small LDL measurement (EFO:0022297)
 PMID:38448586
GWAS1386446_H GCST90302156 Total lipids in very small VLDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.4736 5E-10 9.302 rs7741879 0.0254 total lipids in very small VLDL measurement (EFO:0022156)
 PMID:38448586
Database
Acc Id
Source(s)
GWAS Catalog GCST90302074 GWAS Catalog

Note Type Note Reference