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General

QTL: GWAS1092594_H (age at onset, major depressive disorder QTL GWAS1092594 (human)) Homo sapiens

Symbol:

GWAS1092594_H

Name:

age at onset, major depressive disorder QTL GWAS1092594 (human)

RGD ID:

596973075

Trait:

age at onset, major depressive disorder

LOD Score:

Not Available

P Value:

9.0E-6

Variance:

Not Available

Position

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh38	6	5,389,170 - 5,389,171	RGD_MAPPER_PIPELINE	GRCh38
GRCh37	6	5,389,403 - 5,389,404	RGD_MAPPER_PIPELINE	GRCh37

Population Stats:

Not Available

JBrowse:

View Region in Genome Browser (JBrowse)

Model

#	Reference Title	Reference Citation
1.	RGD GWAS Catalog Import Pipeline	RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

The following Genes overlap with this region.

RGD ID	Symbol	Name	Chr	Start	Stop	Species
1342814	FARS2	phenylalanyl-tRNA synthetase 2, mitochondrial	6	5249934	5771583	Human

Peak: (rs73350538)

Human Assembly	Chr	Position (strand)	Source
GRCh38	6	5,389,170 - 5,389,171	RGD_MAPPER_PIPELINE

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
407183748	GWAS832724_H	unipolar depression, age at onset QTL GWAS832724 (human)		0.000009	unipolar depression, age at onset		6	5389170	5389171	Human
2289408	BW324_H	Body weight QTL 324 (human)	3.15	0.0001	Body fat amount		6	1	20803913	Human
1643418	BW282_H	Body Weight QTL 282 (human)	2.07	0.001	Body weight		6	1	19321359	Human
596973075	GWAS1092594_H	age at onset, major depressive disorder QTL GWAS1092594 (human)		0.000009	age at onset, major depressive disorder		6	5389170	5389171	Human
2289435	BMD4_H	Bone mineral density QTL 4 (human)	3.15	0.0001	Bone mineral density		6	1	20803913	Human
2292824	PRSTS5_H	Prostate tumor susceptibility QTL 5 (human)			Prostate tumor susceptibility		6	1	19232373	Human
2289320	BW390_H	Body weight QTL 390 (human)	2.13		Body weight	BMI	6	1	19321359	Human
597317223	GWAS1413297_H	age at onset, major depressive disorder QTL GWAS1413297 (human)		0.000009	age at onset, major depressive disorder		6	5389170	5389171	Human
1643495	BW291_H	Body Weight QTL 291 (human)	2.13		Body weight	BMI	6	1	19321359	Human

Data has come from the GWAS Catalog		Download
The highlighted row represents the current QTL

QTL	GWAS Catalog Study	Disease Trait	Study Size	Risk Allele	Risk Allele Frequency	P Value	P Value MLOG	Peak Marker	Reported Odds Ratio or Beta-coefficient	Ontology Accession	PubMed
GWAS1413297_H	GCST90104443	Depression (age of onset)	486 European ancestry individuals	?	NR	0.000009	5.046	rs73350538	0.51	age at onset (EFO:0004847)	PMID:35330412

Database	Acc Id	Source(s)
GWAS Catalog	GCST90104443	GWAS Catalog

Note Type	Note	Reference

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
		Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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QTL: GWAS1092594_H (age at onset, major depressive disorder QTL GWAS1092594 (human)) Homo sapiens