BTF3P7 (basic transcription factor 3 pseudogene 7) - Rat Genome Database

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Gene: BTF3P7 (basic transcription factor 3 pseudogene 7) Homo sapiens
Analyze
Symbol: BTF3P7
Name: basic transcription factor 3 pseudogene 7
RGD ID: 3160707
HGNC Page HGNC:38569
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: BTF3  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3866,794,656 - 6,795,501 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl66,794,915 - 6,795,402 (-)EnsemblGRCh38hg38GRCh38
GRCh3766,794,889 - 6,795,734 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3666,739,788 - 6,740,822 (-)NCBINCBI36Build 36hg18NCBI36
Celera68,024,624 - 8,025,469 (-)NCBICelera
Cytogenetic Map6p25.1NCBI
HuRef66,671,291 - 6,672,136 (-)NCBIHuRef
CHM1_166,797,006 - 6,797,851 (-)NCBICHM1_1
T2T-CHM13v2.066,663,896 - 6,664,741 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:75
Count of miRNA genes:75
Interacting mature miRNAs:75
Transcripts:ENST00000407097
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 2 4
Low 46 28 22 39 398 8 109 13 28 23 202 186 34 34 51 1
Below cutoff 977 1148 621 184 554 103 2171 983 1036 118 532 673 86 575 1403 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000407097
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl66,794,915 - 6,795,402 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC BTF3P7 COSMIC
Ensembl Genes ENSG00000219986 Ensembl
GTEx ENSG00000219986 GTEx
HGNC ID HGNC:38569 ENTREZGENE
Human Proteome Map BTF3P7 Human Proteome Map
NCBI Gene 652960 ENTREZGENE