GWAS1440318_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1440318_H (vital capacity QTL GWAS1440318 (human)) Homo sapiens

Symbol: GWAS1440318_H
Name: vital capacity QTL GWAS1440318 (human)
RGD ID: 597344244
Trait: vital capacity
LOD Score: Not Available
P Value: 8.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3867,101,851 - 7,101,852RGD_MAPPER_PIPELINEGRCh38
GRCh3767,102,084 - 7,102,085RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1440318_HHumanvital capacity  IAGPrs675209405850206 GWAS_CATALOGPMID:36914875

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs675209)
Human AssemblyChrPosition (strand)Source
GRCh3867,101,851 - 7,101,852RGD_MAPPER_PIPELINE


1 to 10 of 18 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
407125381GWAS774357_Hurate measurement QTL GWAS774357 (human)1e-23urate measurementblood uric acid level (CMO:0000501)671018517101852Human
2289408BW324_HBody weight QTL 324 (human)3.150.0001Body fat amount6120803913Human
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
597121299GWAS1217373_Hurate measurement QTL GWAS1217373 (human)1e-84urate measurementblood uric acid level (CMO:0000501)671018517101852Human
1643377BW325_HBody weight QTL 325 (human)2.320.0005Body fat amount6691196032911960Human
1643569GLUCO21_HGlucose level QTL 21 (human)0.021Glucose levelnon-insulin-dependent6691196032911960Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human
407127817GWAS776793_Hurate measurement QTL GWAS776793 (human)1e-09Varicose veinsblood uric acid level (CMO:0000501)671018517101852Human
597344244GWAS1440318_Hvital capacity QTL GWAS1440318 (human)8e-11vital capacity671018517101852Human

1 to 10 of 18 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1440318_H GCST90244093 Lung function (forced vital capacity) 475,645 European ancestry individuals, 8,590 African ancestry individuals, 85,279 East Asian ancestry individuals, 4,270 South Asian ancestry individuals, 14,668 Hispanic or Latin American individuals T 0.278 8E-11 10.097 rs675209 6.493 vital capacity (EFO:0004312)
 PMID:36914875
GWAS1145586_H GCST010637 Urate levels 110,238 European ancestry individuals, 21,471 East Asian individuals T NR 4E-23 22.398 rs675209 0.062 urate measurement (EFO:0004531)
 PMID:31985003
GWAS1213680_H GCST007733 Serum uric acid levels 121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals T 0.216 6E-24 23.222 rs675209 0.045 uric acid measurement (EFO:0004761)
 PMID:30993211
GWAS1217373_H GCST011119 Urate levels 454,183 European ancestry individuals T 0.27 1E-84 84 rs675209 0.0401 urate measurement (EFO:0004531)
 PMID:33356394
GWAS774357_H GCST001791 Urate levels 49,825 European ancestry males, 60,522 European ancestry females T 0.27 1E-23 23 rs675209 0.0612 urate measurement (EFO:0004531)
 PMID:23263486
GWAS776793_H GCST000818 Urate levels 28,283 European ancestry individuals T 0.26 1E-9 9 rs675209 4.39 urate measurement (EFO:0004531)
 PMID:20884846
None Available GCST90018939 Varicose veins 22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls C NR 1E-9 9 rs675209 0.0715 Varicose veins (HP:0002619)
 PMID:34594039
GWAS1373488_H GCST90131901 Insomnia 593,724 European ancestry cases, 1,771,286 European ancestry controls T NR 3E-8 7.523 rs675209 0.006 insomnia (EFO:0004698)
 PMID:35835914
Database
Acc Id
Source(s)
GWAS Catalog GCST90244093 GWAS Catalog

Note Type Note Reference