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bone morphogenesis - Ontology Report - Rat Genome Database

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ONTOLOGY REPORT - ANNOTATIONS

Term:bone morphogenesis
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Accession:GO:0060349 term browser browse the term
Definition:The process in which bones are generated and organized.

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show annotations for term's descendants           Sort by:
bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acp5 acid phosphatase 5, tartrate resistant acts_upstream_of_or_within ISO
IEA 		MGI:2180086 (PMID:8898228)
GO_REF:0000107 		RGD
Ensembl		 PMID:8898228 GO_REF:0000107 NCBI chr 8:20,663,984...20,670,604
Ensembl chr 8:20,663,985...20,667,929 		JBrowse link
G Actn3 actinin alpha 3 involved_in ISO
IEA 		(PMID:21784188)
GO_REF:0000107 		RGD
Ensembl		 PMID:21784188 GO_REF:0000107 NCBI chr 1:211,588,473...211,604,401
Ensembl chr 1:202,159,082...202,175,012 		JBrowse link
G Atg9a autophagy related 9A involved_in ISS
ISO 		GO_REF:0000024
(PMID:27811852) 		UniProt
RGD		 PMID:27811852 GO_REF:0000024 NCBI chr 9:76,677,403...76,688,050
Ensembl chr 9:76,677,404...76,687,986 		JBrowse link
G Cdx1 caudal type homeo box 1 acts_upstream_of_or_within ISO
IEA 		MGI:2154514|MGI:97858 (PMID:11784046)
GO_REF:0000107 		RGD
Ensembl		 PMID:11784046 GO_REF:0000107 NCBI chr18:54,472,587...54,490,913
Ensembl chr18:54,473,444...54,490,814 		JBrowse link
G Chsy1 chondroitin sulfate synthase 1 acts_upstream_of_or_within ISO
IEA 		MGI:5007063 (PMID:22280990)
GO_REF:0000107 		RGD
Ensembl		 PMID:22280990 GO_REF:0000107 NCBI chr 1:119,689,626...119,750,711
Ensembl chr 1:119,686,350...119,750,601 		JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within ISO MGI:2179740 (PMID:20549734) RGD PMID:20549734 NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897 		JBrowse link
G Col9a1 collagen type IX alpha 1 chain acts_upstream_of_or_within ISO MGI:88469 (PMID:18191556) RGD PMID:18191556 NCBI chr 9:26,585,034...26,668,222
Ensembl chr 9:26,585,034...26,668,213 		JBrowse link
G Comp cartilage oligomeric matrix protein acts_upstream_of_or_within ISO
IEA 		MGI:88465 (PMID:18191556)
GO_REF:0000107 		RGD
Ensembl		 PMID:18191556 GO_REF:0000107 NCBI chr16:19,047,206...19,055,584
Ensembl chr16:19,047,207...19,055,845 		JBrowse link
G Cst5 cystatin D involved_in ISO MGI:3629665 (PMID:16680148) RGD PMID:16680148 NCBI chr 3:137,573,194...137,577,754
Ensembl chr 3:137,573,194...137,577,754 		JBrowse link
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 involved_in ISO
IEA 		(PMID:22019272)
GO_REF:0000107 		RGD
Ensembl		 PMID:22019272 GO_REF:0000107 NCBI chr 4:117,041,808...117,058,628
Ensembl chr 4:117,041,808...117,058,628 		JBrowse link
G Dhrs3 dehydrogenase/reductase 3 acts_upstream_of_or_within ISO
IEA 		MGI:5007106 (PMID:24005908)
GO_REF:0000107 		RGD
Ensembl		 PMID:24005908 GO_REF:0000107 NCBI chr 5:156,747,939...156,782,420
Ensembl chr 5:156,747,962...156,782,417 		JBrowse link
G Dlx5 distal-less homeobox 5 acts_upstream_of_or_within ISO
IEA 		MGI:2180474 (PMID:16330189)
GO_REF:0000107 		RGD
Ensembl		 PMID:16330189 GO_REF:0000107 NCBI chr 4:34,999,139...35,003,504
Ensembl chr 4:34,999,139...35,003,407 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:20080592), (PMID:20404326), (PMID:23192691) 		Ensembl
RGD		 PMID:20080592 PMID:20404326 PMID:23192691 GO_REF:0000107 NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:2153799 (PMID:10518547) RGD PMID:10518547 NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626 		JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within
involved_in 		ISO MGI:1931521 (PMID:19407216)
(PMID:20582225) 		RGD PMID:19407216 PMID:20582225 NCBI chr14:76,987,242...77,002,671
Ensembl chr14:76,987,993...77,003,341 		JBrowse link
G Glg1 golgi glycoprotein 1 acts_upstream_of_or_within ISO
IEA 		MGI:4829764 (PMID:20530870)
GO_REF:0000107 		RGD
Ensembl		 PMID:20530870 GO_REF:0000107 NCBI chr19:39,124,892...39,224,178
Ensembl chr19:39,124,641...39,224,178 		JBrowse link
G Has2 hyaluronan synthase 2 acts_upstream_of_or_within ISO
IEA 		MGI:2176070|MGI:4360705 (PMID:21246657)
GO_REF:0000107 		RGD
Ensembl		 PMID:21246657 GO_REF:0000107 NCBI chr 7:88,113,326...88,139,337
Ensembl chr 7:88,113,326...88,128,933 		JBrowse link
G Ifitm5 interferon induced transmembrane protein 5 involved_in ISO
IEA
IBA 		(PMID:24519609)
GO_REF:0000107
(PMID:20838829)
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:20838829 PMID:24519609 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:196,045,836...196,052,554
Ensembl chr 1:196,045,666...196,047,232 		JBrowse link
G Ift80 intraflagellar transport 80 acts_upstream_of_or_within ISO
IEA 		MGI:3856827 (PMID:21227999)
GO_REF:0000107 		RGD
Ensembl		 PMID:21227999 GO_REF:0000107 NCBI chr 2:153,144,707...153,240,024
Ensembl chr 2:153,145,795...153,240,024 		JBrowse link
G Lrp5 LDL receptor related protein 5 involved_in ISO
IEA 		(PMID:19673927), (PMID:20146170), (PMID:20630166)
GO_REF:0000107 		RGD
Ensembl		 PMID:19673927 PMID:20146170 PMID:20630166 GO_REF:0000107 NCBI chr 1:200,814,247...200,917,581
Ensembl chr 1:200,814,250...200,917,581 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:1861309 RGD MGI:61254 NCBI chr 4:167,269,856...167,400,364
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Ltbp3 latent transforming growth factor beta binding protein 3 acts_upstream_of_or_within ISO
IEA 		MGI:2180017 (PMID:11790802), (PMID:20530870)
GO_REF:0000107 		RGD
Ensembl		 PMID:11790802 PMID:20530870 GO_REF:0000107 NCBI chr 1:203,029,412...203,045,975
Ensembl chr 1:203,029,877...203,045,975 		JBrowse link
G Ltf lactotransferrin involved_in ISO (PMID:15166119) RGD PMID:15166119 NCBI chr 8:110,999,948...111,022,795
Ensembl chr 8:110,999,948...111,022,795 		JBrowse link
G Mmp13 matrix metallopeptidase 13 involved_in ISO
IEA
ISS 		(PMID:16167086)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:16167086 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:4,497,960...4,508,239
Ensembl chr 8:4,497,960...4,508,239 		JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within ISO MGI:1933766|MGI:97169 (PMID:12489152), (PMID:16330189), (PMID:17693062) RGD PMID:12489152 PMID:16330189 PMID:17693062 NCBI chr14:72,961,036...72,964,970
Ensembl chr14:72,961,148...72,964,966 		JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:97168 (PMID:17693062)
GO_REF:0000107 		RGD
Ensembl		 PMID:17693062 GO_REF:0000107 NCBI chr17:11,102,284...11,107,949
Ensembl chr17:11,097,103...11,102,879 		JBrowse link
G Osr2 odd-skipped related transcription factor 2 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:17547533) 		UniProt
Ensembl
RGD		 PMID:17547533 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:66,487,841...66,495,003
Ensembl chr 7:66,487,839...66,495,224 		JBrowse link
G Pappa2 pappalysin 2 acts_upstream_of_or_within ISO
IEA 		MGI:5504500 (PMID:23457539)
GO_REF:0000107 		RGD
Ensembl		 PMID:23457539 GO_REF:0000107 NCBI chr13:70,873,918...71,147,874
Ensembl chr13:70,876,794...71,147,779 		JBrowse link
G Pax1 paired box 1 acts_upstream_of_or_within ISO
IEA 		MGI:1856223|MGI:1856225 (PMID:7607069)
GO_REF:0000107 		RGD
Ensembl		 PMID:7607069 GO_REF:0000107 NCBI chr 3:134,792,330...134,801,637
Ensembl chr 3:134,789,182...134,801,636 		JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within ISO
IEA 		MGI:1931079|MGI:88360 (PMID:11784046), (PMID:8388780)
GO_REF:0000107 		RGD
Ensembl		 PMID:8388780 PMID:11784046 GO_REF:0000107 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177 		JBrowse link
G Ripply1 ripply transcriptional repressor 1 acts_upstream_of_or_within ISO MGI:2685968|MGI:4459309 (PMID:20346937) RGD PMID:20346937 NCBI chr  X:103,436,731...103,440,904
Ensembl chr  X:103,436,729...103,443,349 		JBrowse link
G Ripply2 ripply transcriptional repressor 2 acts_upstream_of_or_within ISO MGI:3614797 (PMID:20346937) RGD PMID:20346937 NCBI chr 8:87,974,444...87,979,002
Ensembl chr 8:87,974,776...87,978,969 		JBrowse link
G Sfrp4 secreted frizzled-related protein 4 involved_in ISO
IEA
ISS 		(PMID:27355534)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:27355534 GO_REF:0000024 GO_REF:0000107 NCBI chr17:45,278,867...45,330,806
Ensembl chr17:45,234,097...45,330,736 		JBrowse link
G Ski Ski proto-oncogene acts_upstream_of_or_within ISO MGI:2177555 (PMID:9284043) RGD PMID:9284043 NCBI chr 5:165,713,525...165,782,134
Ensembl chr 5:165,714,093...165,782,733 		JBrowse link
G Sp5 Sp5 transcription factor acts_upstream_of_or_within ISO
IEA 		MGI:98472 (PMID:11071760)
GO_REF:0000107 		RGD
Ensembl		 PMID:11071760 GO_REF:0000107 NCBI chr 3:55,274,931...55,277,733
Ensembl chr 3:55,274,931...55,277,733 		JBrowse link
G Tbxt T-box transcription factor T acts_upstream_of_or_within ISO
IEA 		MGI:1927715 (PMID:11071760)
GO_REF:0000107 		RGD
Ensembl		 PMID:11071760 GO_REF:0000107 NCBI chr 1:52,298,104...52,309,813
Ensembl chr 1:52,298,099...52,305,864 		JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISS
ISO 		GO_REF:0000024
(PMID:8622766) 		UniProt
RGD		 PMID:8622766 GO_REF:0000024 NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
cartilage development involved in endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbs cystathionine beta synthase acts_upstream_of_or_within ISO
IEA 		MGI:1857139 (PMID:15622513)
GO_REF:0000107 		RGD
Ensembl		 PMID:15622513 GO_REF:0000107 NCBI chr20:9,708,089...9,732,623
Ensembl chr20:9,708,090...9,732,764 		JBrowse link
G Col1a1 collagen type I alpha 1 chain acts_upstream_of_or_within ISO
IEA 		MGI:3769585 (PMID:18248096)
GO_REF:0000107 		RGD
Ensembl		 PMID:18248096 GO_REF:0000107 NCBI chr10:79,883,622...79,900,625
Ensembl chr10:79,883,622...79,900,624 		JBrowse link
G Col2a1 collagen type II alpha 1 chain acts_upstream_of_or_within IEP
IEA
ISO 		mandibular condylar cartilage
GO_REF:0000107
MGI:1857275|MGI:2152978 (PMID:11680679), (PMID:8989518), (PMID:9022054) 		Ensembl
RGD		 PMID:8989518 PMID:9022054 PMID:11680679 PMID:12924823 GO_REF:0000107, RGD:8661659 NCBI chr 7:129,098,489...129,127,560
Ensembl chr 7:129,098,786...129,127,546 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO
IEA 		(PMID:21185280), (PMID:23958822)
GO_REF:0000107 		RGD
Ensembl		 PMID:21185280 PMID:23958822 GO_REF:0000107 NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357 		JBrowse link
G Ghr growth hormone receptor IEP RGD PMID:15749813 RGD:2307373 NCBI chr 2:52,541,452...52,804,960
Ensembl chr 2:52,542,594...52,804,735 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO
IEA 		MGI:96203 (PMID:14668414)
GO_REF:0000107 		RGD
Ensembl		 PMID:14668414 GO_REF:0000107 NCBI chr 4:81,342,527...81,346,189
Ensembl chr 4:81,342,528...81,346,232 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within ISO MGI:96172 (PMID:14668414) RGD PMID:14668414 NCBI chr 3:59,584,840...59,587,257
Ensembl chr 3:59,585,039...59,586,783 		JBrowse link
G Hspg2 heparan sulfate proteoglycan 2 acts_upstream_of_or_within ISO MGI:1934891 (PMID:10545953) RGD PMID:10545953 NCBI chr 5:149,677,437...149,778,594
Ensembl chr 5:149,677,476...149,778,594 		JBrowse link
G Shox2 SHOX homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:3628798 (PMID:16537395)
GO_REF:0000107 		RGD
Ensembl		 PMID:16537395 GO_REF:0000107 NCBI chr 2:151,217,049...151,227,180
Ensembl chr 2:151,217,552...151,227,143 		JBrowse link
G Sik3 SIK family kinase 3 acts_upstream_of_or_within ISO
IEA 		MGI:5317918 (PMID:22318228)
GO_REF:0000107 		RGD
Ensembl		 PMID:22318228 GO_REF:0000107 NCBI chr 8:46,312,253...46,522,444
Ensembl chr 8:46,311,989...46,522,444 		JBrowse link
G Trpv4 transient receptor potential cation channel, subfamily V, member 4 involved_in ISO
IEA 		(PMID:26249260)
GO_REF:0000107 		RGD
Ensembl		 PMID:26249260 GO_REF:0000107 NCBI chr12:47,599,161...47,638,143
Ensembl chr12:41,938,560...41,977,517 		JBrowse link
chondrocyte development involved in endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Serpinh1 serpin family H member 1 acts_upstream_of_or_within ISO
IEA 		MGI:2176070|MGI:5505265 (PMID:22492985)
GO_REF:0000107 		RGD
Ensembl		 PMID:22492985 GO_REF:0000107 NCBI chr 1:153,643,500...153,650,853
Ensembl chr 1:153,643,510...153,650,801 		JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 acts_upstream_of_or_within ISO
IEA 		MGI:1856877 (PMID:21788370)
GO_REF:0000107 		RGD
Ensembl		 PMID:21788370 GO_REF:0000107 NCBI chr19:34,162,337...34,245,786
Ensembl chr19:34,162,341...34,245,749 		JBrowse link
chondrocyte differentiation involved in endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin2 axin 2 acts_upstream_of_or_within ISO
IEA 		MGI:3579503 (PMID:19623616)
GO_REF:0000107 		RGD
Ensembl		 PMID:19623616 GO_REF:0000107 NCBI chr10:93,893,830...93,927,042
Ensembl chr10:93,899,245...93,926,231 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:29545125) RGD PMID:29545125 NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357 		JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO
IEA 		(PMID:25639508)
GO_REF:0000107 		RGD
Ensembl		 PMID:25639508 GO_REF:0000107 NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
G Scube2 signal peptide, CUB domain and EGF like domain containing 2 acts_upstream_of_or_within ISO MGI:5698367 (PMID:25639508) RGD PMID:25639508 NCBI chr 1:163,831,876...163,899,925
Ensembl chr 1:163,832,015...163,899,393 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISO
IEA
ISS 		(PMID:20676705)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:20676705 GO_REF:0000024 GO_REF:0000107 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Trip11 thyroid hormone receptor interactor 11 acts_upstream_of_or_within ISO
IEA 		MGI:4829605 (PMID:20089971)
GO_REF:0000107 		RGD
Ensembl		 PMID:20089971 GO_REF:0000107 NCBI chr 6:120,995,242...121,067,693
Ensembl chr 6:120,998,733...121,067,781 		JBrowse link
coronal suture morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:3603464 (PMID:19389359) RGD PMID:19389359 NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626 		JBrowse link
cranial suture morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA 		(PMID:9477322)
GO_REF:0000107 		RGD
Ensembl		 PMID:9477322 GO_REF:0000107 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Fgf4 fibroblast growth factor 4 acts_upstream_of_or_within ISO
IEA 		(PMID:9477322)
GO_REF:0000107 		RGD
Ensembl		 PMID:9477322 GO_REF:0000107 NCBI chr 1:200,023,937...200,027,793
Ensembl chr 1:200,024,056...200,025,466 		JBrowse link
G Igf1 insulin-like growth factor 1 IEP RGD PMID:10597685 RGD:12910129 NCBI chr 7:24,169,608...24,249,446
Ensembl chr 7:22,282,930...22,359,296 		JBrowse link
G Insig1 insulin induced gene 1 acts_upstream_of_or_within ISO MGI:1920249 (PMID:16955138) RGD PMID:16955138 NCBI chr 4:7,315,494...7,323,972
Ensembl chr 4:7,315,495...7,323,952 		JBrowse link
G Insig2 insulin induced gene 2 acts_upstream_of_or_within ISO
IEA 		MGI:1916289 (PMID:16955138)
GO_REF:0000107 		RGD
Ensembl		 PMID:16955138 GO_REF:0000107 NCBI chr13:32,472,390...32,500,139
Ensembl chr13:32,473,742...32,494,923 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 acts_upstream_of_or_within
involved_in 		ISO MGI:1857265|MGI:3038818 (PMID:12221714), (PMID:15030764)
(PMID:16502419) 		RGD PMID:12221714 PMID:15030764 PMID:16502419 NCBI chr 6:50,674,910...50,676,904
Ensembl chr 6:50,674,678...50,677,653 		JBrowse link
craniofacial suture morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxn3 forkhead box N3 acts_upstream_of_or_within ISO
IEA 		(PMID:20691664)
GO_REF:0000107 		RGD
Ensembl		 PMID:20691664 GO_REF:0000107 NCBI chr 6:118,462,018...118,842,442
Ensembl chr 6:118,466,025...118,842,401 		JBrowse link
G Frem1 Fras1 related extracellular matrix 1 involved_in ISO
IEA 		(PMID:21931569)
GO_REF:0000107 		RGD
Ensembl		 PMID:21931569 GO_REF:0000107 NCBI chr 5:97,321,266...97,469,523
Ensembl chr 5:97,322,538...97,469,543 		JBrowse link
G LOC100360522 ribosomal protein P1-like involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr17:8,431,634...8,432,745
Ensembl chr17:8,431,465...8,435,348
Ensembl chr 8:8,431,465...8,435,348 		JBrowse link
G Megf8 multiple EGF-like-domains 8 involved_in IEA
ISO 		GO_REF:0000107
(PMID:23063620) 		Ensembl
RGD		 PMID:23063620 GO_REF:0000107 NCBI chr 1:90,030,057...90,079,423
Ensembl chr 1:80,902,574...80,951,613 		JBrowse link
G Mmp14 matrix metallopeptidase 14 acts_upstream_of_or_within ISO
IEA 		MGI:1276107 (PMID:18022611)
GO_REF:0000107 		RGD
Ensembl		 PMID:18022611 GO_REF:0000107 NCBI chr15:27,887,795...27,897,020
Ensembl chr15:27,887,727...27,899,864 		JBrowse link
G Mmp16 matrix metallopeptidase 16 acts_upstream_of_or_within ISO
IEA 		MGI:101900 (PMID:18022611)
GO_REF:0000107 		RGD
Ensembl		 PMID:18022611 GO_REF:0000107 NCBI chr 5:31,312,280...31,556,276
Ensembl chr 5:31,312,280...31,548,388 		JBrowse link
G Neurog1 neurogenin 1 involved_in ISO
IEA 		UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067)
GO_REF:0000107 		RGD
Ensembl		 PMID:23419067 GO_REF:0000107 NCBI chr17:8,362,878...8,364,397
Ensembl chr17:8,362,821...8,364,571 		JBrowse link
G Rab23 RAB23, member RAS oncogene family involved_in ISO
IEA 		(PMID:17503333)
GO_REF:0000107 		RGD
Ensembl		 PMID:17503333 GO_REF:0000107 NCBI chr 9:35,943,522...35,967,367
Ensembl chr 9:35,944,085...35,966,927 		JBrowse link
G Rplp1 ribosomal protein lateral stalk subunit P1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 8:62,394,008...62,395,341
Ensembl chr 8:62,393,177...62,395,339 		JBrowse link
G Tifab TIFA inhibitor involved_in ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,433,406...8,436,541
Ensembl chr17:8,431,635...8,436,592 		JBrowse link
G Tmem107 transmembrane protein 107 acts_upstream_of_or_within ISO MGI:5007367 (PMID:28954202) RGD PMID:28954202 NCBI chr10:53,772,153...53,774,685
Ensembl chr10:53,771,784...53,774,676 		JBrowse link
endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr2 bone morphogenetic protein receptor type 2 involved_in ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr 9:61,192,718...61,307,280
Ensembl chr 9:61,190,566...61,301,809 		JBrowse link
G Carm1 coactivator-associated arginine methyltransferase 1 acts_upstream_of_or_within ISO MGI:2663959 (PMID:19725955) RGD PMID:19725955 NCBI chr 8:20,097,262...20,141,950
Ensembl chr 8:20,097,254...20,147,689 		JBrowse link
G Col3a1 collagen type III alpha 1 chain involved_in ISO MGI:1860700 (PMID:17960558) RGD PMID:17960558 NCBI chr 9:47,374,611...47,410,547
Ensembl chr 9:47,374,593...47,410,547 		JBrowse link
G Dspp dentin sialophosphoprotein acts_upstream_of_or_within ISO MGI:2653208 (PMID:26972716) RGD PMID:26972716 NCBI chr14:5,565,562...5,571,669
Ensembl chr14:5,565,629...5,571,672 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO MGI:1857079 (PMID:22359666) RGD PMID:22359666 NCBI chr 1:22,518,051...22,583,044
Ensembl chr 1:20,698,764...20,763,715 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:108050 (PMID:21185280), (PMID:21310272), (PMID:29545125) 		Ensembl
RGD		 PMID:21185280 PMID:21310272 PMID:29545125 GO_REF:0000107 NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357 		JBrowse link
G Ext2 exostosin glycosyltransferase 2 acts_upstream_of_or_within ISO
IEA 		MGI:894663 (PMID:21310272)
GO_REF:0000107 		RGD
Ensembl		 PMID:21310272 GO_REF:0000107 NCBI chr 3:79,665,414...79,798,077
Ensembl chr 3:79,665,415...79,798,059 		JBrowse link
G Ihh Indian hedgehog signaling molecule involved_in ISO (PMID:10465785), (PMID:10631175) RGD PMID:10465785 PMID:10631175 NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO
IEA 		MGI:2158693 (PMID:11371614)
GO_REF:0000107 		RGD
Ensembl		 PMID:11371614 GO_REF:0000107 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
endochondral ossification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alpl alkaline phosphatase, biomineralization associated acts_upstream_of_or_within ISO
IEA 		MGI:2183411 (PMID:20684022)
GO_REF:0000107 		RGD
Ensembl		 PMID:20684022 GO_REF:0000107 NCBI chr 5:149,951,397...150,006,424
Ensembl chr 5:149,951,409...150,006,446 		JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:20059955)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:20059955 GO_REF:0000024 GO_REF:0000107 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Bmp6 bone morphogenetic protein 6 acts_upstream_of_or_within ISO
IEA 		MGI:2136985 (PMID:9664685)
GO_REF:0000107 		RGD
Ensembl		 PMID:9664685 GO_REF:0000107 NCBI chr17:26,318,121...26,469,691
Ensembl chr17:26,318,569...26,470,365 		JBrowse link
G Bpnt2 3'(2'), 5'-bisphosphate nucleotidase 2 acts_upstream_of_or_within ISO MGI:3806990 (PMID:18539921) RGD PMID:18539921 NCBI chr 5:17,775,684...17,802,570
Ensembl chr 5:17,772,608...17,802,570 		JBrowse link
G Cbs cystathionine beta synthase acts_upstream_of_or_within ISO
IEA 		MGI:1857139 (PMID:15622513)
GO_REF:0000107 		RGD
Ensembl		 PMID:15622513 GO_REF:0000107 NCBI chr20:9,708,089...9,732,623
Ensembl chr20:9,708,090...9,732,764 		JBrowse link
G Col10a1 collagen type X alpha 1 chain IMP RGD PMID:10853827 RGD:704421 NCBI chr20:38,183,103...38,189,488
Ensembl chr20:38,182,494...38,189,494 		JBrowse link
G Col13a1 collagen type XIII alpha 1 chain involved_in ISO
IEA 		(PMID:11470398)
GO_REF:0000107 		RGD
Ensembl		 PMID:11470398 GO_REF:0000107 NCBI chr20:29,783,965...29,924,116
Ensembl chr20:29,783,965...29,924,032 		JBrowse link
G Col1a1 collagen type I alpha 1 chain acts_upstream_of_or_within ISO
IEA 		MGI:1856671 (PMID:8130375)
GO_REF:0000107 		RGD
Ensembl		 PMID:8130375 GO_REF:0000107 NCBI chr10:79,883,622...79,900,625
Ensembl chr10:79,883,622...79,900,624 		JBrowse link
G Col2a1 collagen type II alpha 1 chain acts_upstream_of_or_within ISO
IEA 		(PMID:10100048)
GO_REF:0000107 		RGD
Ensembl		 PMID:10100048 GO_REF:0000107 NCBI chr 7:129,098,489...129,127,560
Ensembl chr 7:129,098,786...129,127,546 		JBrowse link
G Csgalnact1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 acts_upstream_of_or_within ISO
IEA 		MGI:4947395 (PMID:21148564)
GO_REF:0000107 		RGD
Ensembl		 PMID:21148564 GO_REF:0000107 NCBI chr16:20,995,210...21,330,586
Ensembl chr16:21,235,784...21,330,319 		JBrowse link
G Cst5 cystatin D involved_in ISO MGI:3629665 (PMID:16680148) RGD PMID:16680148 NCBI chr 3:137,573,194...137,577,754
Ensembl chr 3:137,573,194...137,577,754 		JBrowse link
G Dlx5 distal-less homeobox 5 involved_in IEA
ISO
ISS 		GO_REF:0000107
(PMID:19956613)
GO_REF:0000024 		Ensembl
RGD
UniProt		 PMID:19956613 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:34,999,139...35,003,504
Ensembl chr 4:34,999,139...35,003,407 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO MGI:6402836 (PMID:24770645) RGD PMID:24770645 NCBI chr 1:22,518,051...22,583,044
Ensembl chr 1:20,698,764...20,763,715 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO
IEA 		(PMID:21185280), (PMID:23958822)
GO_REF:0000107 		RGD
Ensembl		 PMID:21185280 PMID:23958822 GO_REF:0000107 NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357 		JBrowse link
G Fgf18 fibroblast growth factor 18 acts_upstream_of_or_within ISO MGI:2178751 (PMID:17014841) RGD PMID:17014841 NCBI chr10:17,706,011...17,737,702
Ensembl chr10:17,706,174...17,736,818 		JBrowse link
G Foxc1 forkhead box C1 involved_in ISO
IEA 		(PMID:25808752)
GO_REF:0000107 		RGD
Ensembl		 PMID:25808752 GO_REF:0000107 NCBI chr17:32,631,379...32,635,361
Ensembl chr17:32,633,142...32,634,803 		JBrowse link
G Galnt3 polypeptide N-acetylgalactosaminyltransferase 3 acts_upstream_of_or_within ISO
IEA 		(PMID:25107907)
GO_REF:0000107 		RGD
Ensembl		 PMID:25107907 GO_REF:0000107 NCBI chr 3:50,742,500...50,779,266
Ensembl chr 3:50,742,512...50,766,268 		JBrowse link
G Gnas GNAS complex locus acts_upstream_of_or_within ISO
IEA 		MGI:3043361 (PMID:15797856)
GO_REF:0000107 		RGD
Ensembl		 PMID:15797856 GO_REF:0000107 NCBI chr 3:183,489,648...183,554,570
Ensembl chr 3:163,071,417...163,127,262
Ensembl chr 3:163,071,417...163,127,262 		JBrowse link
G Hspg2 heparan sulfate proteoglycan 2 acts_upstream_of_or_within ISO MGI:1934892 (PMID:10579729) RGD PMID:10579729 NCBI chr 5:149,677,437...149,778,594
Ensembl chr 5:149,677,476...149,778,594 		JBrowse link
G Ift80 intraflagellar transport 80 acts_upstream_of_or_within ISO
IEA 		MGI:3665440|MGI:5818514 (PMID:26098911)
GO_REF:0000107 		RGD
Ensembl		 PMID:26098911 GO_REF:0000107 NCBI chr 2:153,144,707...153,240,024
Ensembl chr 2:153,145,795...153,240,024 		JBrowse link
G Inppl1 inositol polyphosphate phosphatase-like 1 involved_in ISO
ISS
IEA 		(PMID:23273569)
GO_REF:0000024
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:23273569 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:156,183,043...156,197,500
Ensembl chr 1:156,183,059...156,197,500 		JBrowse link
G Mef2c myocyte enhancer factor 2C acts_upstream_of_or_within ISO MGI:99533 (PMID:17336904) RGD PMID:17336904 NCBI chr 2:13,973,299...14,136,065
Ensembl chr 2:13,993,438...14,132,880 		JBrowse link
G Mef2d myocyte enhancer factor 2D acts_upstream_of_or_within ISO MGI:99458 (PMID:17336904) RGD PMID:17336904 NCBI chr 2:173,606,054...173,635,620
Ensembl chr 2:173,606,490...173,634,457 		JBrowse link
G Mmp13 matrix metallopeptidase 13 involved_in IEP
ISO
IEA 		(PMID:17987127)
GO_REF:0000107 		RGD
Ensembl		 PMID:17987127 PMID:10646117 GO_REF:0000107, RGD:10043159 NCBI chr 8:4,497,960...4,508,239
Ensembl chr 8:4,497,960...4,508,239 		JBrowse link
G Mmp14 matrix metallopeptidase 14 acts_upstream_of_or_within ISO
IEA 		MGI:1276107 (PMID:18022611)
GO_REF:0000107 		RGD
Ensembl		 PMID:18022611 GO_REF:0000107 NCBI chr15:27,887,795...27,897,020
Ensembl chr15:27,887,727...27,899,864 		JBrowse link
G Mmp16 matrix metallopeptidase 16 acts_upstream_of_or_within ISO
IEA 		MGI:101900 (PMID:18022611)
GO_REF:0000107 		RGD
Ensembl		 PMID:18022611 GO_REF:0000107 NCBI chr 5:31,312,280...31,556,276
Ensembl chr 5:31,312,280...31,548,388 		JBrowse link
G Nab1 Ngfi-A binding protein 1 acts_upstream_of_or_within ISO
IEA 		MGI:107563 (PMID:16136673)
GO_REF:0000107 		RGD
Ensembl		 PMID:16136673 GO_REF:0000107 NCBI chr 9:49,053,579...49,093,078
Ensembl chr 9:49,053,758...49,092,098 		JBrowse link
G Nab2 Ngfi-A binding protein 2 acts_upstream_of_or_within ISO
IEA 		MGI:107564 (PMID:16136673)
GO_REF:0000107 		RGD
Ensembl		 PMID:16136673 GO_REF:0000107 NCBI chr 7:63,497,589...63,504,105
Ensembl chr 7:63,497,589...63,503,989 		JBrowse link
G Nfix nuclear factor I X involved_in ISO MGI:3714028 (PMID:17353270) RGD PMID:17353270 NCBI chr19:23,355,388...23,450,360
Ensembl chr19:23,355,498...23,448,265 		JBrowse link
G Npr2 natriuretic peptide receptor 2 involved_in IEA
ISO 		GO_REF:0000107
MGI:1856702|MGI:3522129|MGI:3774275 (PMID:15572448), (PMID:15722353), (PMID:17728275) 		Ensembl
RGD		 PMID:15572448 PMID:15722353 PMID:17728275 GO_REF:0000107 NCBI chr 5:57,883,171...57,901,590
Ensembl chr 5:57,883,171...57,901,580 		JBrowse link
G Pex7 peroxisomal biogenesis factor 7 acts_upstream_of_or_within ISO
IEA 		MGI:3052739 (PMID:12915479)
GO_REF:0000107 		RGD
Ensembl		 PMID:12915479 GO_REF:0000107 NCBI chr 1:14,582,698...14,646,686
Ensembl chr 1:14,582,699...14,646,748 		JBrowse link
G Phospho1 phosphoethanolamine/phosphocholine phosphatase 1 acts_upstream_of_or_within ISO MGI:5049904 (PMID:20684022) RGD PMID:20684022 NCBI chr10:80,762,062...80,769,596
Ensembl chr10:80,760,792...80,770,342 		JBrowse link
G Pthlh parathyroid hormone-like hormone acts_upstream_of_or_within ISO MGI:2154515 (PMID:8895385) RGD PMID:8895385 NCBI chr 4:180,188,792...180,199,847
Ensembl chr 4:180,188,792...180,199,847 		JBrowse link
G Runx2 RUNX family transcription factor 2 acts_upstream_of_or_within ISO MGI:2176466 (PMID:10072783) RGD PMID:10072783 NCBI chr 9:16,167,504...16,492,826
Ensembl chr 9:16,167,482...16,492,167 		JBrowse link
G Scx scleraxis bHLH transcription factor involved_in ISO (PMID:20059955) RGD PMID:20059955 NCBI chr 7:108,176,608...108,178,626
Ensembl chr 7:108,176,608...108,178,626 		JBrowse link
G Sik3 SIK family kinase 3 acts_upstream_of_or_within ISO
IEA 		MGI:5317918 (PMID:22318228)
GO_REF:0000107 		RGD
Ensembl		 PMID:22318228 GO_REF:0000107 NCBI chr 8:46,312,253...46,522,444
Ensembl chr 8:46,311,989...46,522,444 		JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 acts_upstream_of_or_within ISO
IEA 		MGI:1856877|MGI:3575405 (PMID:17591962), (PMID:21788370), (PMID:24505141)
GO_REF:0000107 		RGD
Ensembl		 PMID:17591962 PMID:21788370 PMID:24505141 GO_REF:0000107 NCBI chr19:34,162,337...34,245,786
Ensembl chr19:34,162,341...34,245,749 		JBrowse link
G Tek TEK receptor tyrosine kinase IEP RGD PMID:11735002 RGD:1601509 NCBI chr 5:109,607,077...109,733,805
Ensembl chr 5:109,607,077...109,733,804 		JBrowse link
G Tmem119 transmembrane protein 119 involved_in ISO
IEA 		(PMID:22416756)
GO_REF:0000107 		RGD
Ensembl		 PMID:22416756 GO_REF:0000107 NCBI chr12:42,828,621...42,835,678
Ensembl chr12:42,828,418...42,835,689 		JBrowse link
frontal suture morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA 		MGI:1856276 (PMID:20570969)
GO_REF:0000107 		RGD
Ensembl		 PMID:20570969 GO_REF:0000107 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:1926381 (PMID:10742104)
GO_REF:0000107 		RGD
Ensembl		 PMID:10742104 GO_REF:0000107 NCBI chr17:11,102,284...11,107,949
Ensembl chr17:11,097,103...11,102,879 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 IEP RGD PMID:12416537 RGD:2302805 NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 IEP RGD PMID:12416537 RGD:2302805 NCBI chr13:98,160,075...98,261,771
Ensembl chr13:98,160,087...98,261,405 		JBrowse link
G Tgfb3 transforming growth factor, beta 3 IEP RGD PMID:12416537 RGD:2302805 NCBI chr 6:105,704,058...105,726,661
Ensembl chr 6:105,704,236...105,726,564 		JBrowse link
growth plate cartilage axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stc1 stanniocalcin 1 involved_in ISO
IEA 		(PMID:16377640)
GO_REF:0000107 		RGD
Ensembl		 PMID:16377640 GO_REF:0000107 NCBI chr15:44,299,591...44,311,695
Ensembl chr15:44,299,621...44,310,264 		JBrowse link
growth plate cartilage chondrocyte development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col27a1 collagen type XXVII alpha 1 chain acts_upstream_of_or_within ISO
IEA 		MGI:5315593 (PMID:22206015)
GO_REF:0000107 		RGD
Ensembl		 PMID:22206015 GO_REF:0000107 NCBI chr 5:76,647,302...76,765,989
Ensembl chr 5:76,647,429...76,765,174 		JBrowse link
G Poc1a POC1 centriolar protein A acts_upstream_of_or_within ISO
IEA 		MGI:2135614 (PMID:26496357)
GO_REF:0000107 		RGD
Ensembl		 PMID:26496357 GO_REF:0000107 NCBI chr 8:106,922,058...106,991,678
Ensembl chr 8:106,922,978...106,991,089 		JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:152,660,259...152,671,682
Ensembl chr 1:152,656,693...152,672,588 		JBrowse link
growth plate cartilage chondrocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf2 activating transcription factor 2 involved_in ISO MGI:1857283 (PMID:18638549) RGD PMID:18638549 NCBI chr 3:58,718,323...58,795,280
Ensembl chr 3:58,718,332...58,795,236 		JBrowse link
G Ift80 intraflagellar transport 80 acts_upstream_of_or_within ISO
IEA 		MGI:3665440|MGI:5818514 (PMID:26098911)
GO_REF:0000107 		RGD
Ensembl		 PMID:26098911 GO_REF:0000107 NCBI chr 2:153,144,707...153,240,024
Ensembl chr 2:153,145,795...153,240,024 		JBrowse link
G Nppc natriuretic peptide C involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:11259675) 		UniProt
Ensembl
RGD		 PMID:11259675 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:94,767,986...94,772,186
Ensembl chr 9:87,320,051...87,324,251 		JBrowse link
growth plate cartilage chondrocyte growth term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cst5 cystatin D involved_in ISO MGI:3629665 (PMID:16680148) RGD PMID:16680148 NCBI chr 3:137,573,194...137,577,754
Ensembl chr 3:137,573,194...137,577,754 		JBrowse link
G Rarg retinoic acid receptor, gamma involved_in ISO
IEA 		(PMID:19389355)
GO_REF:0000107 		RGD
Ensembl		 PMID:19389355 GO_REF:0000107 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:22421045) 		UniProt
Ensembl
RGD		 PMID:22421045 GO_REF:0000024 GO_REF:0000107 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 acts_upstream_of_or_within ISO
IEA 		MGI:2384513 (PMID:21420963)
GO_REF:0000107 		RGD
Ensembl		 PMID:21420963 GO_REF:0000107 NCBI chr 8:115,794,537...115,883,615
Ensembl chr 8:115,794,537...115,883,228 		JBrowse link
growth plate cartilage chondrocyte morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Matn1 matrilin 1 acts_upstream_of_or_within ISO
IEA 		MGI:2153042|MGI:3663272 (PMID:16877353)
GO_REF:0000107 		RGD
Ensembl		 PMID:16877353 GO_REF:0000107 NCBI chr 5:143,117,198...143,127,140
Ensembl chr 5:143,117,504...143,127,059 		JBrowse link
growth plate cartilage chondrocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf2 activating transcription factor 2 involved_in ISO MGI:1857283 (PMID:18638549) RGD PMID:18638549 NCBI chr 3:58,718,323...58,795,280
Ensembl chr 3:58,718,332...58,795,236 		JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist involved_in ISO
IEA 		(PMID:19113921)
GO_REF:0000107 		RGD
Ensembl		 PMID:19113921 GO_REF:0000107 NCBI chr 5:97,306,427...97,309,783
Ensembl chr 5:97,306,431...97,309,783 		JBrowse link
G Nppc natriuretic peptide C involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:11259675) 		UniProt
Ensembl
RGD		 PMID:11259675 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:94,767,986...94,772,186
Ensembl chr 9:87,320,051...87,324,251 		JBrowse link
growth plate cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col2a1 collagen type II alpha 1 chain IEP spheno-occipital synchondrosis RGD PMID:20591638 RGD:8661256 NCBI chr 7:129,098,489...129,127,560
Ensembl chr 7:129,098,786...129,127,546 		JBrowse link
G Col9a1 collagen type IX alpha 1 chain acts_upstream_of_or_within ISO MGI:2152964|MGI:88469|MGI:98737|MGI:98739 (PMID:18191556), (PMID:18467703) RGD PMID:18191556 PMID:18467703 NCBI chr 9:26,585,034...26,668,222
Ensembl chr 9:26,585,034...26,668,213 		JBrowse link
G Comp cartilage oligomeric matrix protein acts_upstream_of_or_within ISO
IEA 		MGI:2180787|MGI:3758741|MGI:88465|MGI:98737|MGI:98739 (PMID:17588960), (PMID:18191556), (PMID:18467703)
GO_REF:0000107 		RGD
Ensembl		 PMID:17588960 PMID:18191556 PMID:18467703 GO_REF:0000107 NCBI chr16:19,047,206...19,055,584
Ensembl chr16:19,047,207...19,055,845 		JBrowse link
G Fosl2 FOS like 2, AP-1 transcription factor subunit acts_upstream_of_or_within ISO
IEA 		(PMID:15509771)
GO_REF:0000107 		RGD
Ensembl		 PMID:15509771 GO_REF:0000107 NCBI chr 6:24,297,898...24,319,219
Ensembl chr 6:24,300,956...24,320,034 		JBrowse link
G Ift80 intraflagellar transport 80 acts_upstream_of_or_within ISO
IEA 		MGI:3665440|MGI:5818514 (PMID:26098911), (PMID:32227389)
GO_REF:0000107 		RGD
Ensembl		 PMID:26098911 PMID:32227389 GO_REF:0000107 NCBI chr 2:153,144,707...153,240,024
Ensembl chr 2:153,145,795...153,240,024 		JBrowse link
G Mmp13 matrix metallopeptidase 13 acts_upstream_of_or_within ISO
IEA 		MGI:98729 (PMID:21444811)
GO_REF:0000107 		RGD
Ensembl		 PMID:21444811 GO_REF:0000107 NCBI chr 8:4,497,960...4,508,239
Ensembl chr 8:4,497,960...4,508,239 		JBrowse link
G Npr2 natriuretic peptide receptor 2 involved_in IEA
ISO 		GO_REF:0000107
MGI:3774275|MGI:4358115 (PMID:17728275), (PMID:23065701) 		Ensembl
RGD		 PMID:17728275 PMID:23065701 GO_REF:0000107 NCBI chr 5:57,883,171...57,901,590
Ensembl chr 5:57,883,171...57,901,580 		JBrowse link
G Rara retinoic acid receptor, alpha acts_upstream_of_or_within ISO
IEA 		MGI:97858 (PMID:19389355)
GO_REF:0000107 		RGD
Ensembl		 PMID:19389355 GO_REF:0000107 NCBI chr10:83,883,490...83,928,932
Ensembl chr10:83,893,384...83,928,142 		JBrowse link
G Rarb retinoic acid receptor, beta acts_upstream_of_or_within ISO
IEA 		MGI:97858 (PMID:19389355)
GO_REF:0000107 		RGD
Ensembl		 PMID:19389355 GO_REF:0000107 NCBI chr15:8,700,533...9,051,288
Ensembl chr15:8,406,492...9,051,288 		JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within ISO
IEA 		MGI:97856|MGI:97857 (PMID:19389355)
GO_REF:0000107 		RGD
Ensembl		 PMID:19389355 GO_REF:0000107 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177 		JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 acts_upstream_of_or_within ISO
IEA 		MGI:1340026 (PMID:21420963)
GO_REF:0000107 		RGD
Ensembl		 PMID:21420963 GO_REF:0000107 NCBI chr 8:115,794,537...115,883,615
Ensembl chr 8:115,794,537...115,883,228 		JBrowse link
G Thbs1 thrombospondin 1 acts_upstream_of_or_within ISO MGI:2154534|MGI:88465|MGI:88469|MGI:98739 (PMID:18467703) RGD PMID:18467703 NCBI chr 3:105,056,293...105,071,445
Ensembl chr 3:105,056,292...105,071,440 		JBrowse link
G Thbs3 thrombospondin 3 acts_upstream_of_or_within ISO
IEA 		MGI:3581964|MGI:88465|MGI:88469|MGI:98737 (PMID:18467703)
GO_REF:0000107 		RGD
Ensembl		 PMID:18467703 GO_REF:0000107 NCBI chr 2:174,621,788...174,633,594
Ensembl chr 2:174,621,812...174,633,594 		JBrowse link
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO
IEA 		MGI:2180033 (PMID:11923874)
GO_REF:0000107 		RGD
Ensembl		 PMID:11923874 GO_REF:0000107 NCBI chr 5:134,627,218...134,660,360
Ensembl chr 5:134,627,229...134,660,110 		JBrowse link
lambdoid suture morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA 		MGI:1856276 (PMID:20570969)
GO_REF:0000107 		RGD
Ensembl		 PMID:20570969 GO_REF:0000107 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
negative regulation of growth plate cartilage chondrocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dspp dentin sialophosphoprotein acts_upstream_of_or_within ISO MGI:2653208 (PMID:26972716) RGD PMID:26972716 NCBI chr14:5,565,562...5,571,669
Ensembl chr14:5,565,629...5,571,672 		JBrowse link
perichondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO
IEA 		(PMID:28768899)
GO_REF:0000107 		RGD
Ensembl		 PMID:28768899 GO_REF:0000107 NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357 		JBrowse link
positive regulation of growth plate cartilage chondrocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Por cytochrome p450 oxidoreductase IMP positive regulation RGD PMID:19264869 RGD:2316785 NCBI chr12:20,951,058...20,999,198
Ensembl chr12:20,951,058...20,999,245 		JBrowse link
regulation of growth plate cartilage chondrocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Carm1 coactivator-associated arginine methyltransferase 1 acts_upstream_of_or_within ISO MGI:2663959 (PMID:19725955) RGD PMID:19725955 NCBI chr 8:20,097,262...20,141,950
Ensembl chr 8:20,097,254...20,147,689 		JBrowse link
sagittal suture morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA 		MGI:1856276 (PMID:20570969)
GO_REF:0000107 		RGD
Ensembl		 PMID:20570969 GO_REF:0000107 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20543
    developmental process 7160
      anatomical structure morphogenesis 3019
        animal organ morphogenesis 1175
          bone morphogenesis 121
            craniofacial suture closure 0
            craniofacial suture morphogenesis + 23
            endochondral bone morphogenesis + 74
            intramembranous bone morphogenesis 0
            membrane bone morphogenesis + 1
            replacement bone morphogenesis 0
Path 2
Term Annotations click to browse term
  biological_process 20543
    developmental process 7160
      anatomical structure development 6656
        multicellular organism development 5362
          system development 4644
            skeletal system development 594
              bone development 266
                bone morphogenesis 121
                  craniofacial suture closure 0
                  craniofacial suture morphogenesis + 23
                  endochondral bone morphogenesis + 74
                  intramembranous bone morphogenesis 0
                  membrane bone morphogenesis + 1
                  replacement bone morphogenesis 0
paths to the root