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ONTOLOGY REPORT - ANNOTATIONS


Term:bone development
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Accession:GO:0060348 term browser browse the term
Definition:The process whose specific outcome is the progression of bone over time, from its formation to the mature structure. Bone is the hard skeletal connective tissue consisting of both mineral and cellular components.



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bone development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07063281.1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Akap13 A-kinase anchoring protein 13 involved_in ISS
ISO
GO_REF:0000024
(PMID:25892096)
(MGI:5770225|PMID:25892096)
UniProt
RGD
PMID:25892096 GO_REF:0000024 MGI:5770225 NCBI chr 1:129,313,183...129,619,647
Ensembl chr 1:129,314,402...129,619,646
JBrowse link
G Amer1 APC membrane recruitment protein 1 acts_upstream_of_or_within ISO MGI:2446599|MGI:5086003 (PMID:21571217) RGD PMID:21571217 NCBI chr  X:60,300,595...60,316,480
Ensembl chr  X:60,295,751...60,316,440
JBrowse link
G Ankrd11 ankyrin repeat domain containing 11 acts_upstream_of_or_within ISO MGI:3797584 (PMID:17986521), (PMID:33996804) RGD PMID:17986521 PMID:33996804 NCBI chr19:50,940,284...51,098,962
Ensembl chr19:50,940,299...51,098,962
JBrowse link
G Asxl1 ASXL transcriptional regulator 1 acts_upstream_of_or_within ISO (PMID:22876197) RGD PMID:22876197 NCBI chr 3:141,814,012...141,881,526
Ensembl chr 3:141,813,433...141,881,538
JBrowse link
G Bbln bublin coiled coil protein acts_upstream_of_or_within ISO (PMID:32569872) RGD PMID:32569872 NCBI chr 3:15,674,577...15,677,322
Ensembl chr 3:15,674,580...15,677,374
JBrowse link
G Bbx BBX high mobility group box domain containing acts_upstream_of_or_within ISO (PMID:22876197) RGD PMID:22876197 NCBI chr11:50,381,249...50,628,934
Ensembl chr11:50,381,247...50,623,251
JBrowse link
G Bglap bone gamma-carboxyglutamate protein involved_in IEP
IBA
IEA
GO_REF:0000033
GO_REF:0000002
GO_Central
InterPro
RGD
PMID:3488316 GO_REF:0000002 GO_REF:0000033, RGD:2316176 NCBI chr 2:173,838,518...173,839,495
Ensembl chr 2:173,838,518...173,839,495
JBrowse link
G Bgn biglycan involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:107942 (PMID:19932218)
Ensembl
RGD
PMID:19932218 GO_REF:0000107 NCBI chr  X:151,197,296...151,209,458
Ensembl chr  X:151,197,273...151,209,461
JBrowse link
G Bmp2 bone morphogenetic protein 2 involved_in IEA
ISO
GO_REF:0000107
MGI:3696052 (PMID:20551513)
Ensembl
RGD
PMID:20551513 GO_REF:0000107 NCBI chr 3:120,812,660...120,822,579
Ensembl chr 3:120,812,882...120,821,397
JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:8358941) RGD PMID:8358941 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Bmp6 bone morphogenetic protein 6 involved_in ISO (PMID:16798745) RGD PMID:16798745 NCBI chr17:26,318,121...26,469,691
Ensembl chr17:26,318,569...26,470,365
JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B involved_in ISO MGI:3696052 (PMID:20551513) RGD PMID:20551513 NCBI chr 2:230,538,252...230,871,077
Ensembl chr 2:230,541,558...230,871,368
JBrowse link
G Cadm1 cell adhesion molecule 1 acts_upstream_of_or_within ISO (PMID:22876197) RGD PMID:22876197 NCBI chr 8:47,847,836...48,178,703
Ensembl chr 8:47,847,325...48,182,833
JBrowse link
G Ccn4 cellular communication network factor 4 involved_in IEA
ISO
GO_REF:0000107
(PMID:15331410), (PMID:25864198)
(MGI:5788182|PMID:25864198), (MGI:6294593|PMID:15331410)
Ensembl
RGD
PMID:15331410 PMID:25864198 GO_REF:0000107 MGI:5788182 MGI:6294593 NCBI chr 7:98,645,238...98,677,253
Ensembl chr 7:98,645,182...98,677,248
JBrowse link
G Cfh complement factor H acts_upstream_of_or_within ISO (PMID:19828624) RGD PMID:19828624 NCBI chr13:51,512,376...51,613,829
Ensembl chr13:51,511,828...51,613,838
JBrowse link
G Chad chondroadherin involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:5529270 (PMID:23755099)
Ensembl
RGD
PMID:23755099 GO_REF:0000107 NCBI chr10:79,512,170...79,515,941
Ensembl chr10:79,511,931...79,515,940
JBrowse link
G Col2a1 collagen type II alpha 1 chain acts_upstream_of_or_within ISO MGI:2148858 (PMID:11254354) RGD PMID:11254354 NCBI chr 7:129,098,489...129,127,560
Ensembl chr 7:129,098,786...129,127,546
JBrowse link
G Col6a1 collagen type VI alpha 1 chain acts_upstream_of_or_within ISO MGI:2153356 (PMID:22448243) RGD PMID:22448243 NCBI chr20:11,906,105...11,924,599
Ensembl chr20:11,905,957...11,924,597
JBrowse link
G Cr2 complement C3d receptor 2 acts_upstream_of_or_within ISO (PMID:19828624) RGD PMID:19828624 NCBI chr13:106,678,579...106,716,595
Ensembl chr13:106,685,413...106,716,235
JBrowse link
G Cyp19a1 cytochrome P450, family 19, subfamily a, polypeptide 1 IEP RGD PMID:15012600 RGD:4891061 NCBI chr 8:54,552,978...54,580,375
Ensembl chr 8:54,553,165...54,580,758
JBrowse link
G Dbh dopamine beta-hydroxylase IEP RGD PMID:20090303 RGD:5129678 NCBI chr 3:10,488,260...10,505,245
Ensembl chr 3:10,488,260...10,505,248
JBrowse link
G Dmd dystrophin acts_upstream_of_or_within ISO MGI:1342270 (PMID:23798567) RGD PMID:23798567 NCBI chr  X:47,272,324...49,504,219
Ensembl chr  X:47,272,331...49,504,207
JBrowse link
G Dym dymeclin involved_in ISS
ISO
GO_REF:0000024
(PMID:21280149)
UniProt
RGD
PMID:21280149 GO_REF:0000024 NCBI chr18:68,605,131...68,900,905
Ensembl chr18:68,605,185...68,900,903
JBrowse link
G Eng endoglin IEP humerus RGD PMID:20865666 RGD:7257537 NCBI chr 3:15,934,566...15,972,618
Ensembl chr 3:15,934,518...15,973,230
JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO MGI:1857079|MGI:3785162 (PMID:28798354), (PMID:32980560) RGD PMID:28798354 PMID:32980560 NCBI chr 1:20,698,746...20,763,741
Ensembl chr 1:20,698,764...20,763,715
JBrowse link
G Epyc epiphycan involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:5762921|MGI:88158 (PMID:19932218)
GO_Central
RGD
PMID:19932218 GO_REF:0000033 NCBI chr 7:32,436,620...32,474,326
Ensembl chr 7:32,436,620...32,474,135
JBrowse link
G Fgf8 fibroblast growth factor 8 involved_in ISO (PMID:18596921) RGD PMID:18596921 NCBI chr 1:244,584,477...244,590,578
Ensembl chr 1:244,584,652...244,590,359
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:3629660 (PMID:16989802) RGD PMID:16989802 NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626
JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO MGI:2135670 (PMID:20053668) RGD PMID:20053668 NCBI chr14:76,987,242...77,002,671
Ensembl chr14:76,987,993...77,003,341
JBrowse link
G Fosl2 FOS like 2, AP-1 transcription factor subunit acts_upstream_of_or_within ISO MGI:3757560 (PMID:24046454) RGD PMID:24046454 NCBI chr 6:24,297,898...24,319,219
Ensembl chr 6:24,300,956...24,320,034
JBrowse link
G Gja1 gap junction protein, alpha 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:6274948|PMID:25270829)
UniProt
RGD
PMID:25270829 GO_REF:0000024 MGI:6274948 NCBI chr20:35,756,007...35,768,481
Ensembl chr20:35,755,991...35,768,582
JBrowse link
G Gnas GNAS complex locus involved_in ISO (PMID:12719376) RGD PMID:12719376 NCBI chr 3:163,071,003...163,136,350
Ensembl chr 3:163,071,417...163,127,262
Ensembl chr 3:163,071,417...163,127,262
JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO MGI:2135973 (PMID:7789268) RGD PMID:7789268 NCBI chr 4:81,342,527...81,346,189
Ensembl chr 4:81,342,528...81,346,232
JBrowse link
G Hsd17b1 hydroxysteroid (17-beta) dehydrogenase 1 IEP RGD PMID:15012600 RGD:4891061 NCBI chr10:86,009,728...86,011,928
Ensembl chr10:86,009,728...86,011,927
JBrowse link
G Hsd17b2 hydroxysteroid (17-beta) dehydrogenase 2 IEP RGD PMID:15012600 RGD:4891061 NCBI chr19:45,753,576...45,825,203
Ensembl chr19:45,753,574...45,825,202
JBrowse link
G Idua alpha-L-iduronidase acts_upstream_of_or_within ISO MGI:4415188 (PMID:19751987) RGD PMID:19751987 NCBI chr14:1,031,588...1,059,494
Ensembl chr14:1,032,171...1,046,522
JBrowse link
G Ift172 intraflagellar transport 172 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:4821824 (PMID:21653639)
Ensembl
RGD
PMID:21653639 GO_REF:0000107 NCBI chr 6:25,081,933...25,121,271
Ensembl chr 6:25,081,980...25,120,860
JBrowse link
G Ift80 intraflagellar transport 80 acts_upstream_of_or_within ISO (PMID:35733270) RGD PMID:35733270 NCBI chr 2:153,144,707...153,240,024
Ensembl chr 2:153,145,795...153,240,024
JBrowse link
G Igf1 insulin-like growth factor 1 IEP RGD PMID:24735836 RGD:11352746 NCBI chr 7:22,282,895...22,361,972
Ensembl chr 7:22,282,930...22,359,296
JBrowse link
G Itgb6 integrin subunit beta 6 acts_upstream_of_or_within ISO (PMID:30467097) RGD PMID:30467097 NCBI chr 3:45,046,295...45,170,532
Ensembl chr 3:45,048,044...45,121,671
JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within ISO MGI:94909 (PMID:23798567) RGD PMID:23798567 NCBI chr19:11,603,129...12,048,930
Ensembl chr19:11,603,129...12,048,930
JBrowse link
G Lrp5 LDL receptor related protein 5 involved_in ISO (MGI:4835143|PMID:17700537)
(PMID:17700537)
RGD PMID:17700537 MGI:4835143 NCBI chr 1:200,814,247...200,917,581
Ensembl chr 1:200,814,250...200,917,581
JBrowse link
G Map2k6 mitogen-activated protein kinase kinase 6 involved_in ISO MGI:3696052 (PMID:20551513) RGD PMID:20551513 NCBI chr10:95,373,304...95,490,406
Ensembl chr10:95,373,204...95,488,293
JBrowse link
G Map3k7 mitogen activated protein kinase kinase kinase 7 involved_in ISO MGI:3696052 (PMID:20551513) RGD PMID:20551513 NCBI chr 5:46,356,973...46,415,597
Ensembl chr 5:46,357,931...46,415,597
JBrowse link
G Mapk11 mitogen-activated protein kinase 11 involved_in ISO MGI:3696052 (PMID:20551513) RGD PMID:20551513 NCBI chr 7:120,218,471...120,225,488
Ensembl chr 7:120,218,478...120,225,395
JBrowse link
G Mapk14 mitogen activated protein kinase 14 involved_in IEA
ISO
GO_REF:0000107
MGI:3696052 (PMID:20551513)
Ensembl
RGD
PMID:20551513 GO_REF:0000107 NCBI chr20:6,749,646...6,810,590
Ensembl chr20:6,749,670...6,810,589
JBrowse link
G Mcph1 microcephalin 1 acts_upstream_of_or_within ISO MGI:4431685 (PMID:23516444) RGD PMID:23516444 NCBI chr16:71,021,855...71,224,067
Ensembl chr16:71,024,588...71,224,122
JBrowse link
G Miga2 mitoguardin 2 acts_upstream_of_or_within ISO (PMID:22876197) RGD PMID:22876197 NCBI chr 3:13,636,235...13,658,895
Ensembl chr 3:13,636,238...13,658,896
JBrowse link
G Mmp14 matrix metallopeptidase 14 acts_upstream_of_or_within ISO MGI:1276107 (PMID:18022611) RGD PMID:18022611 NCBI chr15:27,887,795...27,897,020
Ensembl chr15:27,887,727...27,899,864
JBrowse link
G Mmp16 matrix metallopeptidase 16 acts_upstream_of_or_within ISO MGI:101900 (PMID:18022611) RGD PMID:18022611 NCBI chr 5:31,312,280...31,556,276
Ensembl chr 5:31,312,280...31,548,388
JBrowse link
G Myoc myocilin involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:23629661)
(MGI:5503270|PMID:23629661)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:23629661 GO_REF:0000024 GO_REF:0000107 MGI:5503270 NCBI chr13:74,976,730...74,987,128
Ensembl chr13:74,976,730...74,987,127
JBrowse link
G Nos3 nitric oxide synthase 3 IEP femur RGD PMID:10352094 RGD:7794707 NCBI chr 4:10,793,834...10,814,170
Ensembl chr 4:10,793,834...10,814,166
JBrowse link
G Notum NOTUM, palmitoleoyl-protein carboxylesterase acts_upstream_of_or_within ISO
IMP
(PMID:30622831)
MGI:4214308 (PMID:30622831)
RGD PMID:30622831 PMID:30622831 RGD:127285401 NCBI chr10:105,933,245...105,940,327
Ensembl chr10:105,933,249...105,940,315
JBrowse link
G Npr2 natriuretic peptide receptor 2 acts_upstream_of_or_within ISO MGI:1856702 (PMID:624676) RGD PMID:624676 NCBI chr 5:57,883,171...57,901,590
Ensembl chr 5:57,883,171...57,901,580
JBrowse link
G Nsd2 nuclear receptor binding SET domain protein 2 acts_upstream_of_or_within ISO MGI:3851507 (PMID:19483677) RGD PMID:19483677 NCBI chr14:76,833,179...76,911,304
Ensembl chr14:76,835,637...76,913,641
JBrowse link
G Ogn osteoglycin involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:15,032,069...15,052,626
Ensembl chr17:15,032,069...15,052,739
JBrowse link
G Opa3 outer mitochondrial membrane lipid metabolism regulator OPA3 acts_upstream_of_or_within ISO MGI:5312669 (PMID:27106103) RGD PMID:27106103 NCBI chr 1:78,879,612...78,910,453
Ensembl chr 1:78,880,114...78,901,469
Ensembl chr 1:78,880,114...78,901,469
JBrowse link
G Optc opticin involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:45,353,954...45,368,254
Ensembl chr13:45,355,148...45,365,237
JBrowse link
G P3h1 prolyl 3-hydroxylase 1 involved_in ISO
IEA
(PMID:17277775), (PMID:22615817)
GO_REF:0000107
RGD
Ensembl
PMID:17277775 PMID:22615817 GO_REF:0000107 NCBI chr 5:132,841,868...132,856,664
Ensembl chr 5:132,841,928...132,856,659
JBrowse link
G Papss2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 acts_upstream_of_or_within ISO MGI:1856688 (PMID:624676) RGD PMID:624676 NCBI chr 1:230,454,314...230,539,332
Ensembl chr 1:230,454,426...230,539,331
JBrowse link
G Pdgfa platelet derived growth factor subunit A acts_upstream_of_or_within ISO MGI:1859631 (PMID:23938297) RGD PMID:23938297 NCBI chr12:15,645,549...15,667,056
Ensembl chr12:15,645,541...15,666,497
JBrowse link
G Pdgfc platelet derived growth factor C acts_upstream_of_or_within ISO MGI:97527 (PMID:23938297) RGD PMID:23938297 NCBI chr 2:166,316,870...166,493,449
Ensembl chr 2:166,316,803...166,493,433
JBrowse link
G Phex phosphate regulating endopeptidase X-linked IEP RGD PMID:11064151 RGD:11556272 NCBI chr  X:37,607,553...37,856,183
Ensembl chr  X:37,610,760...37,854,469
JBrowse link
G Pls3 plastin 3 involved_in ISO
IEA
(PMID:24088043)
GO_REF:0000107
RGD
Ensembl
PMID:24088043 GO_REF:0000107 NCBI chr  X:111,589,193...111,683,908
Ensembl chr  X:111,589,254...111,683,891
JBrowse link
G Poc1a POC1 centriolar protein A acts_upstream_of_or_within ISO MGI:2135614 (PMID:26496357) RGD PMID:26496357 NCBI chr 8:106,922,058...106,991,678
Ensembl chr 8:106,922,978...106,991,089
JBrowse link
G Ppib peptidylprolyl isomerase B involved_in ISO (PMID:20089953) RGD PMID:20089953 NCBI chr 8:66,603,877...66,609,734
Ensembl chr 8:66,603,861...66,630,428
JBrowse link
G Prpsap2 phosphoribosyl pyrophosphate synthetase-associated protein 2 acts_upstream_of_or_within ISO (PMID:22876197) RGD PMID:22876197 NCBI chr10:46,410,817...46,445,929
Ensembl chr10:46,410,835...46,445,849
JBrowse link
G Ptger4 prostaglandin E receptor 4 involved_in IDA PMID:19233324 UniProt PMID:19233324 RGD:8554254 NCBI chr 2:54,330,563...54,347,451
Ensembl chr 2:54,335,424...54,346,670
JBrowse link
G Rara retinoic acid receptor, alpha acts_upstream_of_or_within ISO MGI:97858 (PMID:7607067), (PMID:9376317) RGD PMID:7607067 PMID:9376317 NCBI chr10:83,883,490...83,928,932
Ensembl chr10:83,893,384...83,928,142
JBrowse link
G Rarb retinoic acid receptor, beta acts_upstream_of_or_within ISO MGI:97858 (PMID:7607067) RGD PMID:7607067 NCBI chr15:8,700,533...9,051,288
Ensembl chr15:8,406,492...9,051,288
JBrowse link
G Rarg retinoic acid receptor, gamma involved_in
acts_upstream_of_or_within
ISO (MGI:3848572|PMID:19389355)
(PMID:19389355)
MGI:97856|MGI:97857 (PMID:7607067)
RGD PMID:7607067 PMID:19389355 MGI:3848572 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177
JBrowse link
G Rpl13 ribosomal protein L13 involved_in ISO (PMID:31630789) RGD PMID:31630789 NCBI chr19:51,153,990...51,156,541
Ensembl chr19:51,153,924...51,163,014
JBrowse link
G Setdb1 SET domain bifurcated histone lysine methyltransferase 1 acts_upstream_of_or_within ISO (PMID:22876197) RGD PMID:22876197 NCBI chr 2:182,898,738...182,930,283
Ensembl chr 2:182,898,738...182,930,506
JBrowse link
G Sh3pxd2b SH3 and PX domains 2B involved_in ISO (PMID:20137777)
(MGI:4439252|PMID:20137777)
RGD PMID:20137777 MGI:4439252 NCBI chr10:16,918,611...17,027,499
Ensembl chr10:16,918,679...17,005,170
JBrowse link
G Slc10a7 solute carrier family 10, member 7 involved_in ISO (PMID:30082715)
(MGI:6198941|PMID:30082715)
RGD PMID:30082715 MGI:6198941 NCBI chr19:29,183,143...29,407,470
Ensembl chr19:29,183,155...29,407,464
JBrowse link
G Slc38a10 solute carrier family 38, member 10 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:22876197)
Ensembl
RGD
PMID:22876197 GO_REF:0000107 NCBI chr10:105,386,836...105,436,636
Ensembl chr10:105,386,836...105,436,636
JBrowse link
G Smad1 SMAD family member 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1328787|MGI:1859993 (PMID:19224984)
Ensembl
RGD
PMID:19224984 GO_REF:0000107 NCBI chr19:28,513,130...28,573,665
Ensembl chr19:28,513,131...28,573,651
JBrowse link
G Smad5 SMAD family member 5 acts_upstream_of_or_within ISO MGI:109452|MGI:1859993 (PMID:19224984) RGD PMID:19224984 NCBI chr17:7,862,332...7,891,678
Ensembl chr17:7,864,720...7,891,634
JBrowse link
G Smad9 SMAD family member 9 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:109452|MGI:1328787 (PMID:19224984)
Ensembl
RGD
PMID:19224984 GO_REF:0000107 NCBI chr 2:138,956,326...139,006,315
Ensembl chr 2:138,986,471...139,006,307
JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 acts_upstream_of_or_within ISO (PMID:27325675) RGD PMID:27325675 NCBI chr19:34,162,337...34,245,786
Ensembl chr19:34,162,341...34,245,749
JBrowse link
G Sparc secreted protein acidic and cysteine rich acts_upstream_of_or_within ISO (PMID:22876197) RGD PMID:22876197 NCBI chr10:39,516,394...39,538,252
Ensembl chr10:39,516,406...39,538,396
JBrowse link
G Spns2 SPNS lysolipid transporter 2, sphingosine-1-phosphate acts_upstream_of_or_within ISO (PMID:22876197) RGD PMID:22876197 NCBI chr10:57,067,348...57,105,969
Ensembl chr10:57,066,897...57,105,957
JBrowse link
G Srd5a1 steroid 5 alpha-reductase 1 IEP RGD PMID:15012600 RGD:4891061 NCBI chr 1:33,686,069...33,720,468
Ensembl chr 1:33,686,391...33,720,461
JBrowse link
G Srd5a2 steroid 5 alpha-reductase 2 IEP RGD PMID:15012600 RGD:4891061 NCBI chr 6:21,426,225...21,465,727
Ensembl chr 6:21,426,215...21,462,112
JBrowse link
G Stc1 stanniocalcin 1 involved_in ISO (PMID:16377640) RGD PMID:16377640 NCBI chr15:44,299,591...44,311,695
Ensembl chr15:44,299,621...44,310,264
JBrowse link
G Sulf1 sulfatase 1 involved_in IEA
ISO
ISS
GO_REF:0000104
UniProtKB:Q8CFG0 (PMID:17593974)
UniProtKB:Q8CFG0 (MGI:3769052|PMID:17593974)
GO_REF:0000024
UniProt
RGD
PMID:17593974 GO_REF:0000024 GO_REF:0000104 MGI:3769052 NCBI chr 5:6,362,894...6,526,174
Ensembl chr 5:6,362,911...6,525,584
JBrowse link
G Sulf2 sulfatase 2 involved_in ISO UniProtKB:Q8K007 (MGI:3769052|PMID:17593974)
UniProtKB:Q8K007 (PMID:17593974)
RGD PMID:17593974 MGI:3769052 NCBI chr 3:154,822,079...154,904,566
Ensembl chr 3:154,822,085...154,904,415
JBrowse link
G Tgm2 transglutaminase 2 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 3:146,772,684...146,801,924
Ensembl chr 3:146,772,687...146,801,981
JBrowse link
G Tmem38b transmembrane protein 38B acts_upstream_of_or_within ISO MGI:1921416 (PMID:27188440) RGD PMID:27188440 NCBI chr 5:68,460,304...68,496,026
Ensembl chr 5:68,460,304...68,496,025
JBrowse link
G Tnfsf11 TNF superfamily member 11 acts_upstream_of_or_within ISO MGI:5614816 (PMID:26234751) RGD PMID:26234751 NCBI chr15:53,673,850...53,705,325
Ensembl chr15:53,673,877...53,705,445
JBrowse link
G Trim45 tripartite motif-containing 45 acts_upstream_of_or_within ISO (PMID:22876197) RGD PMID:22876197 NCBI chr 2:188,349,979...188,359,205
Ensembl chr 2:188,349,744...188,359,204
JBrowse link
G Trip11 thyroid hormone receptor interactor 11 acts_upstream_of_or_within ISO MGI:3836913|MGI:4829605 (PMID:20089971) RGD PMID:20089971 NCBI chr 6:120,995,242...121,067,693
Ensembl chr 6:120,998,733...121,067,781
JBrowse link
G Ttc9 tetratricopeptide repeat domain 9 acts_upstream_of_or_within ISO (PMID:25798063) RGD PMID:25798063 NCBI chr 6:101,333,274...101,368,110
Ensembl chr 6:101,333,141...101,368,110
JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO MGI:2388066 (PMID:11406614) RGD PMID:11406614 NCBI chr 4:161,590,478...161,632,244
Ensembl chr 4:161,590,479...161,632,149
JBrowse link
G Twist1 twist family bHLH transcription factor 1 IEP RGD PMID:8773900 RGD:5131604 NCBI chr 6:50,674,910...50,676,904
Ensembl chr 6:50,674,678...50,677,653
JBrowse link
G Vkorc1 vitamin K epoxide reductase complex, subunit 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:19492146)
(MGI:5559848|PMID:19492146)
UniProt
RGD
PMID:19492146 GO_REF:0000024 MGI:5559848 NCBI chr 1:182,502,491...182,505,012
Ensembl chr 1:182,500,844...182,505,008
JBrowse link
G Wnt1 Wnt family member 1 involved_in ISO (PMID:23499309) RGD PMID:23499309 NCBI chr 7:129,938,604...129,942,651
Ensembl chr 7:129,938,604...129,942,651
JBrowse link
bone growth term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Comp cartilage oligomeric matrix protein acts_upstream_of_or_within ISO MGI:3758741 (PMID:17588960) RGD PMID:17588960 NCBI chr16:19,047,206...19,055,584
Ensembl chr16:19,047,207...19,055,845
JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO MGI:1857079 (PMID:9541520) RGD PMID:9541520 NCBI chr 1:20,698,746...20,763,741
Ensembl chr 1:20,698,764...20,763,715
JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:21185280) RGD PMID:21185280 NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357
JBrowse link
G Lep leptin involved_in ISS
ISO
GO_REF:0000024
(PMID:10660043)
(MGI:1352383|PMID:10660043)
UniProt
RGD
PMID:10660043 GO_REF:0000024 MGI:1352383 NCBI chr 4:57,661,127...57,675,262
Ensembl chr 4:57,661,131...57,675,262
JBrowse link
G Lepr leptin receptor involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:10660043)
GO_REF:0000107
(MGI:1352383|PMID:10660043)
UniProt
RGD
Ensembl
PMID:10660043 GO_REF:0000024 GO_REF:0000107 MGI:1352383 NCBI chr 5:116,294,409...116,477,904
Ensembl chr 5:116,289,823...116,475,908
JBrowse link
G Mir34a microRNA 34a acts_upstream_of_or_within_positive_effect ISO (PMID:25043055) RGD PMID:25043055 NCBI chr 5:160,533,002...160,533,103
Ensembl chr 5:160,533,002...160,533,103
JBrowse link
G Npr2 natriuretic peptide receptor 2 involved_in ISO MGI:4358115|MGI:5567995|MGI:5911053 (PMID:23065701), (PMID:29199951), (PMID:30249793) RGD PMID:23065701 PMID:29199951 PMID:30249793 NCBI chr 5:57,883,171...57,901,590
Ensembl chr 5:57,883,171...57,901,580
JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3575405 (PMID:17626887), (PMID:24585429)
Ensembl
RGD
PMID:17626887 PMID:24585429 GO_REF:0000107 NCBI chr19:34,162,337...34,245,786
Ensembl chr19:34,162,341...34,245,749
JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:152,660,259...152,671,682
Ensembl chr 1:152,656,693...152,672,588
JBrowse link
bone marrow development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asxl1 ASXL transcriptional regulator 1 acts_upstream_of_or_within ISO MGI:4418244 (PMID:19861679) RGD PMID:19861679 NCBI chr 3:141,814,012...141,881,526
Ensembl chr 3:141,813,433...141,881,538
JBrowse link
G Ctc1 CST telomere replication complex component 1 acts_upstream_of_or_within ISO MGI:5427642 (PMID:22531781) RGD PMID:22531781 NCBI chr10:53,714,614...53,735,298
Ensembl chr10:53,714,644...53,735,298
JBrowse link
G Hoxb4 homeo box B4 acts_upstream_of_or_within ISO MGI:3045971 (PMID:14962901) RGD PMID:14962901 NCBI chr10:81,284,552...81,287,134
Ensembl chr10:81,284,552...81,287,128
JBrowse link
G Lipa lipase A, lysosomal acid type involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2451080 (PMID:20348241)
Ensembl
RGD
PMID:20348241 GO_REF:0000107 NCBI chr 1:232,024,351...232,057,735
Ensembl chr 1:232,024,356...232,057,633
JBrowse link
G Lrp5 LDL receptor related protein 5 involved_in ISO (PMID:17680723) RGD PMID:17680723 NCBI chr 1:200,814,247...200,917,581
Ensembl chr 1:200,814,250...200,917,581
JBrowse link
G Lrrc17 leucine rich repeat containing 17 involved_in ISO (MGI:3850892|PMID:19336404) RGD PMID:19336404 MGI:3850892 NCBI chr 4:13,501,428...13,531,845
Ensembl chr 4:13,501,436...13,531,845
JBrowse link
G Mir188 microRNA 188 acts_upstream_of_or_within ISO (PMID:25751060) RGD PMID:25751060 NCBI chr  X:15,247,715...15,247,794
Ensembl chr  X:15,247,715...15,247,794
JBrowse link
G Ptprc protein tyrosine phosphatase, receptor type, C involved_in ISO (PMID:21911094) RGD PMID:21911094 NCBI chr13:49,596,193...49,708,283
Ensembl chr13:49,596,193...49,708,692
JBrowse link
G Sbds Sbds, ribosome maturation factor involved_in ISO (PMID:15342903) RGD PMID:15342903 NCBI chr12:26,420,410...26,429,650
Ensembl chr12:26,420,414...26,429,649
JBrowse link
G Tp53 tumor protein p53 involved_in ISO
IEA
(PMID:30146126)
GO_REF:0000107
RGD
Ensembl
PMID:30146126 GO_REF:0000107 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
JBrowse link
bone maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr3 fibroblast growth factor receptor 3 involved_in ISO (MGI:4457789|PMID:20582225) RGD PMID:20582225 MGI:4457789 NCBI chr14:76,987,242...77,002,671
Ensembl chr14:76,987,993...77,003,341
JBrowse link
G Gh1 growth hormone 1 involved_in ISO (PMID:20110402) RGD PMID:20110402 NCBI chr10:91,228,102...91,230,079
Ensembl chr10:91,228,103...91,230,078
JBrowse link
G Mbtps2 membrane-bound transcription factor peptidase, site 2 involved_in ISO (PMID:27380894) RGD PMID:27380894 NCBI chr  X:37,410,914...37,461,130
Ensembl chr  X:37,410,811...37,464,430
JBrowse link
bone mineralization involved in bone maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ano6 anoctamin 6 acts_upstream_of_or_within ISO MGI:4127698 (PMID:22936354) RGD PMID:22936354 NCBI chr 7:126,933,919...127,113,588
Ensembl chr 7:126,933,936...127,113,589
JBrowse link
G Asxl2 ASXL transcriptional regulator 2 acts_upstream_of ISO MGI:3840841 (PMID:21490954) RGD PMID:21490954 NCBI chr 6:26,425,017...26,514,899
Ensembl chr 6:26,425,954...26,507,477
JBrowse link
G Ccdc154 coiled-coil domain containing 154 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:5702426 (PMID:20121924)
GO_Central
RGD
PMID:20121924 GO_REF:0000033 NCBI chr10:14,177,271...14,187,378
Ensembl chr10:14,177,278...14,187,253
JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO MGI:1857079|MGI:2385534 (PMID:22359666), (PMID:25260930) RGD PMID:22359666 PMID:25260930 NCBI chr 1:20,698,746...20,763,741
Ensembl chr 1:20,698,764...20,763,715
JBrowse link
G Ift80 intraflagellar transport 80 acts_upstream_of_or_within ISO MGI:3689350|MGI:5818514 (PMID:26996322) RGD PMID:26996322 NCBI chr 2:153,144,707...153,240,024
Ensembl chr 2:153,145,795...153,240,024
JBrowse link
G Igf1 insulin-like growth factor 1 involved_in ISO
IEA
(PMID:16433617)
GO_REF:0000107
RGD
Ensembl
PMID:16433617 GO_REF:0000107 NCBI chr 7:22,282,895...22,361,972
Ensembl chr 7:22,282,930...22,359,296
JBrowse link
G Lep leptin IDA RGD PMID:21353474 RGD:5128507 NCBI chr 4:57,661,127...57,675,262
Ensembl chr 4:57,661,131...57,675,262
JBrowse link
G Phospho1 phosphoethanolamine/phosphocholine phosphatase 1 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:5049904 (PMID:21272676)
GO_Central
RGD
PMID:21272676 GO_REF:0000033 NCBI chr10:80,762,062...80,769,596
Ensembl chr10:80,760,792...80,770,342
JBrowse link
G Snx10 sorting nexin 10 acts_upstream_of_or_within ISO MGI:5690193 (PMID:25811986) RGD PMID:25811986 NCBI chr 4:80,612,648...80,677,005
Ensembl chr 4:80,612,669...80,676,996
JBrowse link
bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acp5 acid phosphatase 5, tartrate resistant involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2180086 (PMID:8898228)
Ensembl
RGD
PMID:8898228 GO_REF:0000107 NCBI chr 8:20,663,984...20,670,604
Ensembl chr 8:20,663,985...20,667,929
JBrowse link
G Actn3 actinin alpha 3 involved_in ISO (MGI:5291888|PMID:21784188)
(PMID:21784188)
RGD PMID:21784188 MGI:5291888 NCBI chr 1:202,159,081...202,175,012
Ensembl chr 1:202,159,082...202,175,012
JBrowse link
G Atg9a autophagy related 9A involved_in ISO
ISS
(MGI:5906103|PMID:27811852)
(PMID:27811852)
GO_REF:0000024
RGD
UniProt
PMID:27811852 GO_REF:0000024 MGI:5906103 NCBI chr 9:76,677,403...76,688,050
Ensembl chr 9:76,677,404...76,687,986
JBrowse link
G Cdx1 caudal type homeo box 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2154514|MGI:97858 (PMID:11784046)
Ensembl
RGD
PMID:11784046 GO_REF:0000107 NCBI chr18:54,472,587...54,490,913
Ensembl chr18:54,473,444...54,490,814
JBrowse link
G Chsy1 chondroitin sulfate synthase 1 acts_upstream_of_or_within ISO MGI:5007063 (PMID:22280990) RGD PMID:22280990 NCBI chr 1:119,689,626...119,750,711
Ensembl chr 1:119,686,350...119,750,601
JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within ISO MGI:2179740 (PMID:20549734) RGD PMID:20549734 NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897
JBrowse link
G Col9a1 collagen type IX alpha 1 chain acts_upstream_of_or_within ISO MGI:88469 (PMID:18191556) RGD PMID:18191556 NCBI chr 9:26,585,034...26,668,222
Ensembl chr 9:26,585,034...26,668,213
JBrowse link
G Comp cartilage oligomeric matrix protein acts_upstream_of_or_within ISO MGI:88465 (PMID:18191556) RGD PMID:18191556 NCBI chr16:19,047,206...19,055,584
Ensembl chr16:19,047,207...19,055,845
JBrowse link
G Cst5 cystatin D involved_in ISO MGI:3629665 (PMID:16680148) RGD PMID:16680148 NCBI chr 3:137,573,194...137,577,754
Ensembl chr 3:137,573,194...137,577,754
JBrowse link
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 involved_in ISO (PMID:22019272) RGD PMID:22019272 NCBI chr 4:117,041,808...117,058,628
Ensembl chr 4:117,041,808...117,058,628
JBrowse link
G Dhrs3 dehydrogenase/reductase 3 acts_upstream_of_or_within ISO MGI:5007106 (PMID:24005908) RGD PMID:24005908 NCBI chr 5:156,747,939...156,782,420
Ensembl chr 5:156,747,962...156,782,417
JBrowse link
G Dlx5 distal-less homeobox 5 acts_upstream_of_or_within ISO MGI:2180474 (PMID:16330189) RGD PMID:16330189 NCBI chr 4:34,999,139...35,003,504
Ensembl chr 4:34,999,139...35,003,407
JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:20080592), (PMID:20404326) RGD PMID:20080592 PMID:20404326 NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:2153799 (PMID:10518547) RGD PMID:10518547 NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626
JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 involved_in
acts_upstream_of_or_within
ISO (MGI:4457789|PMID:20582225)
(PMID:20582225)
MGI:1931521 (PMID:19407216)
RGD PMID:19407216 PMID:20582225 MGI:4457789 NCBI chr14:76,987,242...77,002,671
Ensembl chr14:76,987,993...77,003,341
JBrowse link
G Glg1 golgi glycoprotein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:4829764 (PMID:20530870)
Ensembl
RGD
PMID:20530870 GO_REF:0000107 NCBI chr19:39,124,892...39,224,178
Ensembl chr19:39,124,641...39,224,178
JBrowse link
G Has2 hyaluronan synthase 2 acts_upstream_of_or_within ISO MGI:2176070|MGI:4360705 (PMID:21246657) RGD PMID:21246657 NCBI chr 7:88,113,326...88,139,337
Ensembl chr 7:88,113,326...88,128,933
JBrowse link
G Ifitm5 interferon induced transmembrane protein 5 involved_in ISO
IBA
(PMID:24519609)
GO_REF:0000033
(MGI:5607401|PMID:20838829)
RGD
GO_Central
PMID:20838829 PMID:24519609 GO_REF:0000033 MGI:5607401 NCBI chr 1:196,045,836...196,052,554
Ensembl chr 1:196,045,666...196,047,232
JBrowse link
G Ift80 intraflagellar transport 80 acts_upstream_of_or_within ISO MGI:3856827 (PMID:21227999) RGD PMID:21227999 NCBI chr 2:153,144,707...153,240,024
Ensembl chr 2:153,145,795...153,240,024
JBrowse link
G Lrp5 LDL receptor related protein 5 involved_in ISO (PMID:19673927), (PMID:20146170), (PMID:20630166) RGD PMID:19673927 PMID:20146170 PMID:20630166 NCBI chr 1:200,814,247...200,917,581
Ensembl chr 1:200,814,250...200,917,581
JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:1861309 RGD MGI:61254 NCBI chr 4:167,269,856...167,400,364
Ensembl chr 4:167,270,353...167,400,497
JBrowse link
G Ltbp3 latent transforming growth factor beta binding protein 3 acts_upstream_of_or_within ISO MGI:2180017 (PMID:11790802), (PMID:20530870) RGD PMID:11790802 PMID:20530870 NCBI chr 1:203,029,412...203,045,975
Ensembl chr 1:203,029,877...203,045,975
JBrowse link
G Ltf lactotransferrin involved_in ISO (PMID:15166119) RGD PMID:15166119 NCBI chr 8:110,999,948...111,022,795
Ensembl chr 8:110,999,948...111,022,795
JBrowse link
G Mmp13 matrix metallopeptidase 13 involved_in ISO
ISS
(PMID:16167086)
GO_REF:0000024
RGD
UniProt
PMID:16167086 GO_REF:0000024 NCBI chr 8:4,497,960...4,508,239
Ensembl chr 8:4,497,960...4,508,239
JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within ISO MGI:1933766|MGI:97169 (PMID:12489152), (PMID:16330189), (PMID:17693062) RGD PMID:12489152 PMID:16330189 PMID:17693062 NCBI chr14:72,961,036...72,964,970
Ensembl chr14:72,961,148...72,964,966
JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within ISO MGI:97168 (PMID:17693062) RGD PMID:17693062 NCBI chr17:11,097,214...11,102,879
Ensembl chr17:11,097,103...11,102,879
JBrowse link
G Osr2 odd-skipped related transciption factor 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:17547533)
(MGI:3818159|PMID:17547533)
UniProt
RGD
PMID:17547533 GO_REF:0000024 MGI:3818159 NCBI chr 7:66,487,841...66,495,003
Ensembl chr 7:66,487,839...66,495,224
JBrowse link
G Pappa2 pappalysin 2 acts_upstream_of_or_within ISO MGI:5504500 (PMID:23457539) RGD PMID:23457539 NCBI chr13:70,873,918...71,147,874
Ensembl chr13:70,876,794...71,147,779
JBrowse link
G Pax1 paired box 1 acts_upstream_of_or_within ISO MGI:1856223|MGI:1856225 (PMID:7607069) RGD PMID:7607069 NCBI chr 3:134,792,330...134,801,637
Ensembl chr 3:134,789,182...134,801,636
JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within ISO MGI:1931079|MGI:88360 (PMID:11784046), (PMID:8388780) RGD PMID:8388780 PMID:11784046 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177
JBrowse link
G Ripply1 ripply transcriptional repressor 1 acts_upstream_of_or_within ISO MGI:2685968|MGI:4459309 (PMID:20346937) RGD PMID:20346937 NCBI chr  X:103,436,731...103,440,904
Ensembl chr  X:103,436,729...103,443,349
JBrowse link
G Ripply2 ripply transcriptional repressor 2 acts_upstream_of_or_within ISO MGI:3614797 (PMID:20346937) RGD PMID:20346937 NCBI chr 8:87,974,444...87,979,002
Ensembl chr 8:87,974,776...87,978,969
JBrowse link
G Sfrp4 secreted frizzled-related protein 4 involved_in ISO
IEA
ISS
(PMID:27355534)
GO_REF:0000107
(MGI:5790095|PMID:27355534)
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:27355534 GO_REF:0000024 GO_REF:0000107 MGI:5790095 NCBI chr17:45,278,867...45,330,806
Ensembl chr17:45,234,097...45,330,736
JBrowse link
G Ski Ski proto-oncogene acts_upstream_of_or_within ISO MGI:2177555 (PMID:9284043) RGD PMID:9284043 NCBI chr 5:165,713,525...165,782,134
Ensembl chr 5:165,714,093...165,782,733
JBrowse link
G Sp5 Sp5 transcription factor acts_upstream_of_or_within ISO MGI:98472 (PMID:11071760) RGD PMID:11071760 NCBI chr 3:55,274,931...55,277,733
Ensembl chr 3:55,274,931...55,277,733
JBrowse link
G Tbxt T-box transcription factor T acts_upstream_of_or_within ISO MGI:1927715 (PMID:11071760) RGD PMID:11071760 NCBI chr 1:52,298,104...52,309,813
Ensembl chr 1:52,298,099...52,305,864
JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISS
ISO
GO_REF:0000024
(PMID:8622766)
(MGI:80519|PMID:8622766)
UniProt
RGD
PMID:8622766 GO_REF:0000024 MGI:80519 NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507
JBrowse link
cartilage development involved in endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbs cystathionine beta synthase acts_upstream_of_or_within ISO MGI:1857139 (PMID:15622513) RGD PMID:15622513 NCBI chr20:9,708,089...9,732,623
Ensembl chr20:9,708,090...9,732,764
JBrowse link
G Col1a1 collagen type I alpha 1 chain acts_upstream_of_or_within ISO MGI:3769585 (PMID:18248096) RGD PMID:18248096 NCBI chr10:79,883,622...79,900,625
Ensembl chr10:79,883,622...79,900,624
JBrowse link
G Col2a1 collagen type II alpha 1 chain acts_upstream_of_or_within
involved_in
IEP
ISO
IEA
mandibular condylar cartilage
MGI:1857275|MGI:2152978 (PMID:11680679), (PMID:8989518), (PMID:9022054)
GO_REF:0000107
RGD
Ensembl
PMID:8989518 PMID:9022054 PMID:11680679 PMID:12924823 GO_REF:0000107, RGD:8661659 NCBI chr 7:129,098,489...129,127,560
Ensembl chr 7:129,098,786...129,127,546
JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:21185280), (PMID:23958822) RGD PMID:21185280 PMID:23958822 NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357
JBrowse link
G Ghr growth hormone receptor IEP RGD PMID:15749813 RGD:2307373 NCBI chr 2:52,541,452...52,804,960
Ensembl chr 2:52,542,594...52,804,735
JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO MGI:96203 (PMID:14668414) RGD PMID:14668414 NCBI chr 4:81,342,527...81,346,189
Ensembl chr 4:81,342,528...81,346,232
JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within ISO MGI:96172 (PMID:14668414) RGD PMID:14668414 NCBI chr 3:59,584,840...59,587,257
Ensembl chr 3:59,585,039...59,586,783
JBrowse link
G Hspg2 heparan sulfate proteoglycan 2 acts_upstream_of_or_within ISO MGI:1934891 (PMID:10545953) RGD PMID:10545953 NCBI chr 5:149,677,437...149,778,594
Ensembl chr 5:149,677,476...149,778,594
JBrowse link
G Shox2 SHOX homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3628798 (PMID:16537395)
Ensembl
RGD
PMID:16537395 GO_REF:0000107 NCBI chr 2:151,217,049...151,227,180
Ensembl chr 2:151,217,552...151,227,143
JBrowse link
G Sik3 SIK family kinase 3 acts_upstream_of_or_within ISO MGI:5317918 (PMID:22318228) RGD PMID:22318228 NCBI chr 8:46,312,253...46,522,444
Ensembl chr 8:46,311,989...46,522,444
JBrowse link
G Trpv4 transient receptor potential cation channel, subfamily V, member 4 involved_in ISO (PMID:26249260) RGD PMID:26249260 NCBI chr12:41,938,533...41,977,517
Ensembl chr12:41,938,560...41,977,517
JBrowse link
chondrocyte development involved in endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Serpinh1 serpin family H member 1 acts_upstream_of_or_within ISO MGI:2176070|MGI:5505265 (PMID:22492985) RGD PMID:22492985 NCBI chr 1:153,643,500...153,650,853
Ensembl chr 1:153,643,510...153,650,801
JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1856877 (PMID:21788370)
Ensembl
RGD
PMID:21788370 GO_REF:0000107 NCBI chr19:34,162,337...34,245,786
Ensembl chr19:34,162,341...34,245,749
JBrowse link
chondrocyte differentiation involved in endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin2 axin 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3579503 (PMID:19623616)
Ensembl
RGD
PMID:19623616 GO_REF:0000107 NCBI chr10:93,893,830...93,927,042
Ensembl chr10:93,899,245...93,926,231
JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:25639508) RGD PMID:25639508 NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532
JBrowse link
G Scube2 signal peptide, CUB domain and EGF like domain containing 2 acts_upstream_of_or_within ISO MGI:5698367 (PMID:25639508) RGD PMID:25639508 NCBI chr 1:163,831,876...163,899,925
Ensembl chr 1:163,832,015...163,899,393
JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISO
ISS
(PMID:20676705)
GO_REF:0000024
RGD
UniProt
PMID:20676705 GO_REF:0000024 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
JBrowse link
G Trip11 thyroid hormone receptor interactor 11 acts_upstream_of_or_within ISO MGI:4829605 (PMID:20089971) RGD PMID:20089971 NCBI chr 6:120,995,242...121,067,693
Ensembl chr 6:120,998,733...121,067,781
JBrowse link
coronal suture morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:3603464 (PMID:19389359) RGD PMID:19389359 NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626
JBrowse link
cranial suture morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:9477322)
Ensembl
RGD
PMID:9477322 GO_REF:0000107 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Fgf4 fibroblast growth factor 4 acts_upstream_of_or_within ISO (PMID:9477322) RGD PMID:9477322 NCBI chr 1:200,023,937...200,027,793
Ensembl chr 1:200,024,056...200,025,466
JBrowse link
G Igf1 insulin-like growth factor 1 IEP RGD PMID:10597685 RGD:12910129 NCBI chr 7:22,282,895...22,361,972
Ensembl chr 7:22,282,930...22,359,296
JBrowse link
G Insig1 insulin induced gene 1 acts_upstream_of_or_within ISO MGI:1920249 (PMID:16955138) RGD PMID:16955138 NCBI chr 4:7,315,494...7,323,972
Ensembl chr 4:7,315,495...7,323,952
JBrowse link
G Insig2 insulin induced gene 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1916289 (PMID:16955138)
Ensembl
RGD
PMID:16955138 GO_REF:0000107 NCBI chr13:32,472,390...32,500,139
Ensembl chr13:32,473,742...32,494,923
JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within
ISO (MGI:3623529|PMID:16502419)
(PMID:16502419)
MGI:1857265|MGI:3038818 (PMID:12221714), (PMID:15030764)
RGD PMID:12221714 PMID:15030764 PMID:16502419 MGI:3623529 NCBI chr 6:50,674,910...50,676,904
Ensembl chr 6:50,674,678...50,677,653
JBrowse link
craniofacial suture morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxn3 forkhead box N3 acts_upstream_of_or_within ISO (PMID:20691664) RGD PMID:20691664 NCBI chr 6:118,462,018...118,842,442
Ensembl chr 6:118,466,025...118,842,401
JBrowse link
G Frem1 Fras1 related extracellular matrix 1 involved_in ISO (PMID:21931569) RGD PMID:21931569 NCBI chr 5:97,321,266...97,469,523
Ensembl chr 5:97,322,538...97,469,543
JBrowse link
G Megf8 multiple EGF-like-domains 8 involved_in IEA
ISO
GO_REF:0000107
(PMID:23063620)
Ensembl
RGD
PMID:23063620 GO_REF:0000107 NCBI chr 1:80,902,236...80,951,614
Ensembl chr 1:80,902,574...80,951,613
JBrowse link
G Mmp14 matrix metallopeptidase 14 acts_upstream_of_or_within ISO MGI:1276107 (PMID:18022611) RGD PMID:18022611 NCBI chr15:27,887,795...27,897,020
Ensembl chr15:27,887,727...27,899,864
JBrowse link
G Mmp16 matrix metallopeptidase 16 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:101900 (PMID:18022611)
Ensembl
RGD
PMID:18022611 GO_REF:0000107 NCBI chr 5:31,312,280...31,556,276
Ensembl chr 5:31,312,280...31,548,388
JBrowse link
G Neurog1 neurogenin 1 involved_in ISO UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,362,878...8,364,397
Ensembl chr17:8,362,821...8,364,571
JBrowse link
G Rab23 RAB23, member RAS oncogene family involved_in ISO (PMID:17503333) RGD PMID:17503333 NCBI chr 9:35,943,522...35,967,367
Ensembl chr 9:35,944,085...35,966,927
JBrowse link
G Tifab TIFA inhibitor involved_in ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,433,406...8,436,541
Ensembl chr17:8,431,635...8,436,592
JBrowse link
G Tmem107 transmembrane protein 107 acts_upstream_of_or_within ISO MGI:5007367 (PMID:28954202) RGD PMID:28954202 NCBI chr10:53,772,153...53,774,685
Ensembl chr10:53,771,784...53,774,676
JBrowse link
deltoid tuberosity development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:20059955)
(MGI:4418577|PMID:20059955)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:20059955 GO_REF:0000024 GO_REF:0000107 MGI:4418577 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Pitx2 paired-like homeodomain 2 involved_in ISO (PMID:18312615)
(MGI:3794216|PMID:18312615)
RGD PMID:18312615 MGI:3794216 NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293
JBrowse link
G Scx scleraxis bHLH transcription factor involved_in ISO (MGI:3715390|PMID:17567668), (MGI:4418577|PMID:20059955)
(PMID:17567668), (PMID:20059955)
RGD PMID:17567668 PMID:20059955 MGI:3715390 MGI:4418577 NCBI chr 7:108,176,608...108,178,626
Ensembl chr 7:108,176,608...108,178,626
JBrowse link
endochondral bone growth term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bnc2 basonuclin zinc finger protein 2 acts_upstream_of_or_within ISO MGI:3639337 (PMID:19706529) RGD PMID:19706529 NCBI chr 5:98,679,071...99,016,044
Ensembl chr 5:98,687,410...99,079,426
JBrowse link
G Comp cartilage oligomeric matrix protein acts_upstream_of_or_within ISO (PMID:20138147) RGD PMID:20138147 NCBI chr16:19,047,206...19,055,584
Ensembl chr16:19,047,207...19,055,845
JBrowse link
G Ddr2 discoidin domain receptor tyrosine kinase 2 involved_in ISO (MGI:2158837|PMID:11375938)
(PMID:11375938)
RGD PMID:11375938 MGI:2158837 NCBI chr13:82,193,623...82,318,229
Ensembl chr13:82,195,463...82,317,363
JBrowse link
G Ecm1 extracellular matrix protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:20138147)
Ensembl
RGD
PMID:20138147 GO_REF:0000107 NCBI chr 2:183,287,491...183,292,729
Ensembl chr 2:183,287,322...183,292,671
JBrowse link
G Evc EvC ciliary complex subunit 1 involved_in ISO (MGI:3720528|PMID:17660199)
(PMID:17660199)
RGD PMID:17660199 MGI:3720528 NCBI chr14:73,456,181...73,498,955
Ensembl chr14:73,456,222...73,498,099
JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:23192691) RGD PMID:23192691 NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 IEP RGD PMID:17169623 RGD:12801439 NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626
JBrowse link
G Kdr kinase insert domain receptor IMP RGD PMID:14612527 RGD:8549745 NCBI chr14:32,217,871...32,261,018
Ensembl chr14:32,217,871...32,261,018
JBrowse link
G Msx2 msh homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1926381 (PMID:10742104)
Ensembl
RGD
PMID:10742104 GO_REF:0000107 NCBI chr17:11,097,214...11,102,879
Ensembl chr17:11,097,103...11,102,879
JBrowse link
G Ostn osteocrin acts_upstream_of_or_within ISO (PMID:17951249) RGD PMID:17951249 NCBI chr11:73,442,167...73,478,498
Ensembl chr11:73,442,487...73,468,603
JBrowse link
endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr2 bone morphogenetic protein receptor type 2 involved_in ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr 9:61,192,718...61,307,280
Ensembl chr 9:61,190,566...61,301,809
JBrowse link
G Carm1 coactivator-associated arginine methyltransferase 1 acts_upstream_of_or_within ISO MGI:2663959 (PMID:19725955) RGD PMID:19725955 NCBI chr 8:20,097,262...20,141,950
Ensembl chr 8:20,097,254...20,147,689
JBrowse link
G Col3a1 collagen type III alpha 1 chain involved_in ISO MGI:1860700 (PMID:17960558) RGD PMID:17960558 NCBI chr 9:47,374,611...47,410,547
Ensembl chr 9:47,374,593...47,410,547
JBrowse link
G Dspp dentin sialophosphoprotein acts_upstream_of_or_within ISO MGI:2653208 (PMID:26972716) RGD PMID:26972716 NCBI chr14:5,565,562...5,571,669
Ensembl chr14:5,565,629...5,571,672
JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO MGI:1857079 (PMID:22359666) RGD PMID:22359666 NCBI chr 1:20,698,746...20,763,741
Ensembl chr 1:20,698,764...20,763,715
JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO MGI:108050 (PMID:21310272), (PMID:29545125) RGD PMID:21310272 PMID:29545125 NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357
JBrowse link
G Ext2 exostosin glycosyltransferase 2 acts_upstream_of_or_within ISO MGI:894663 (PMID:21310272) RGD PMID:21310272 NCBI chr 3:79,665,414...79,798,077
Ensembl chr 3:79,665,415...79,798,059
JBrowse link
G Ihh Indian hedgehog signaling molecule involved_in ISO (MGI:1344187|PMID:10465785), (MGI:1351296|PMID:10631175) RGD PMID:10465785 PMID:10631175 MGI:1344187 MGI:1351296 NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532
JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO MGI:2158693 (PMID:11371614) RGD PMID:11371614 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
JBrowse link
endochondral ossification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alpl alkaline phosphatase, biomineralization associated acts_upstream_of_or_within ISO MGI:2183411 (PMID:20684022) RGD PMID:20684022 NCBI chr 5:149,951,397...150,006,424
Ensembl chr 5:149,951,409...150,006,446
JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:20059955)
(MGI:4418577|PMID:20059955)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:20059955 GO_REF:0000024 GO_REF:0000107 MGI:4418577 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Bmp6 bone morphogenetic protein 6 acts_upstream_of_or_within ISO MGI:2136985 (PMID:9664685) RGD PMID:9664685 NCBI chr17:26,318,121...26,469,691
Ensembl chr17:26,318,569...26,470,365
JBrowse link
G Bpnt2 3'(2'), 5'-bisphosphate nucleotidase 2 acts_upstream_of_or_within ISO MGI:3806990 (PMID:18539921) RGD PMID:18539921 NCBI chr 5:17,775,684...17,802,570
Ensembl chr 5:17,772,608...17,802,570
JBrowse link
G Cbs cystathionine beta synthase acts_upstream_of_or_within ISO MGI:1857139 (PMID:15622513) RGD PMID:15622513 NCBI chr20:9,708,089...9,732,623
Ensembl chr20:9,708,090...9,732,764
JBrowse link
G Col10a1 collagen type X alpha 1 chain IMP RGD PMID:10853827 RGD:704421 NCBI chr20:38,183,103...38,189,488
Ensembl chr20:38,182,494...38,189,494
JBrowse link
G Col13a1 collagen type XIII alpha 1 chain involved_in ISO (MGI:2157681|PMID:11470398) RGD PMID:11470398 MGI:2157681 NCBI chr20:29,783,965...29,924,116
Ensembl chr20:29,783,965...29,924,032
JBrowse link
G Col1a1 collagen type I alpha 1 chain acts_upstream_of_or_within ISO MGI:1856671 (PMID:8130375) RGD PMID:8130375 NCBI chr10:79,883,622...79,900,625
Ensembl chr10:79,883,622...79,900,624
JBrowse link
G Col2a1 collagen type II alpha 1 chain involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:10100048)
Ensembl
RGD
PMID:10100048 GO_REF:0000107 NCBI chr 7:129,098,489...129,127,560
Ensembl chr 7:129,098,786...129,127,546
JBrowse link
G Csgalnact1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 acts_upstream_of_or_within ISO MGI:4947395 (PMID:21148564) RGD PMID:21148564 NCBI chr16:20,995,210...21,330,586
Ensembl chr16:21,235,784...21,330,319
JBrowse link
G Cst5 cystatin D involved_in ISO MGI:3629665 (PMID:16680148) RGD PMID:16680148 NCBI chr 3:137,573,194...137,577,754
Ensembl chr 3:137,573,194...137,577,754
JBrowse link
G Dlx5 distal-less homeobox 5 involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:19956613)
(MGI:4413604|PMID:19956613)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:19956613 GO_REF:0000024 GO_REF:0000107 MGI:4413604 NCBI chr 4:34,999,139...35,003,504
Ensembl chr 4:34,999,139...35,003,407
JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO MGI:6402836 (PMID:24770645) RGD PMID:24770645 NCBI chr 1:20,698,746...20,763,741
Ensembl chr 1:20,698,764...20,763,715
JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:21185280), (PMID:23958822) RGD PMID:21185280 PMID:23958822 NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357
JBrowse link
G Fgf18 fibroblast growth factor 18 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2178751 (PMID:17014841)
Ensembl
RGD
PMID:17014841 GO_REF:0000107 NCBI chr10:17,706,011...17,737,702
Ensembl chr10:17,706,174...17,736,818
JBrowse link
G Foxc1 forkhead box C1 involved_in ISO (MGI:5641778|PMID:25808752)
(PMID:25808752)
RGD PMID:25808752 MGI:5641778 NCBI chr17:32,631,379...32,635,361
Ensembl chr17:32,633,142...32,634,803
JBrowse link
G Gnas GNAS complex locus involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3043361 (PMID:15797856)
Ensembl
RGD
PMID:15797856 GO_REF:0000107 NCBI chr 3:163,071,003...163,136,350
Ensembl chr 3:163,071,417...163,127,262
Ensembl chr 3:163,071,417...163,127,262
JBrowse link
G Hspg2 heparan sulfate proteoglycan 2 acts_upstream_of_or_within ISO MGI:1934892 (PMID:10579729) RGD PMID:10579729 NCBI chr 5:149,677,437...149,778,594
Ensembl chr 5:149,677,476...149,778,594
JBrowse link
G Ift80 intraflagellar transport 80 acts_upstream_of_or_within ISO MGI:3665440|MGI:5818514 (PMID:26098911) RGD PMID:26098911 NCBI chr 2:153,144,707...153,240,024
Ensembl chr 2:153,145,795...153,240,024
JBrowse link
G Inppl1 inositol polyphosphate phosphatase-like 1 involved_in ISO
ISS
IEA
(PMID:23273569)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:23273569 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:156,183,043...156,197,500
Ensembl chr 1:156,183,059...156,197,500
JBrowse link
G Mef2c myocyte enhancer factor 2C acts_upstream_of_or_within ISO MGI:99533 (PMID:17336904) RGD PMID:17336904 NCBI chr 2:13,973,299...14,136,065
Ensembl chr 2:13,993,438...14,132,880
JBrowse link
G Mef2d myocyte enhancer factor 2D involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:99458 (PMID:17336904)
Ensembl
RGD
PMID:17336904 GO_REF:0000107 NCBI chr 2:173,606,054...173,635,620
Ensembl chr 2:173,606,490...173,634,457
JBrowse link
G Mmp13 matrix metallopeptidase 13 involved_in IEP
ISO
IEA
(PMID:17987127)
(MGI:3771509|PMID:17987127)
GO_REF:0000107
RGD
Ensembl
PMID:17987127 PMID:10646117 GO_REF:0000107 MGI:3771509, RGD:10043159 NCBI chr 8:4,497,960...4,508,239
Ensembl chr 8:4,497,960...4,508,239
JBrowse link
G Mmp14 matrix metallopeptidase 14 acts_upstream_of_or_within ISO MGI:1276107 (PMID:18022611) RGD PMID:18022611 NCBI chr15:27,887,795...27,897,020
Ensembl chr15:27,887,727...27,899,864
JBrowse link
G Mmp16 matrix metallopeptidase 16 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:101900 (PMID:18022611)
Ensembl
RGD
PMID:18022611 GO_REF:0000107 NCBI chr 5:31,312,280...31,556,276
Ensembl chr 5:31,312,280...31,548,388
JBrowse link
G Nab1 Ngfi-A binding protein 1 acts_upstream_of_or_within ISO MGI:107563 (PMID:16136673) RGD PMID:16136673 NCBI chr 9:49,053,579...49,093,078
Ensembl chr 9:49,053,758...49,092,098
JBrowse link
G Nab2 Ngfi-A binding protein 2 acts_upstream_of_or_within ISO MGI:107564 (PMID:16136673) RGD PMID:16136673 NCBI chr 7:63,497,589...63,504,105
Ensembl chr 7:63,497,589...63,503,989
JBrowse link
G Nfix nuclear factor I X involved_in ISO MGI:3714028 (PMID:17353270) RGD PMID:17353270 NCBI chr19:23,355,388...23,450,360
Ensembl chr19:23,355,498...23,448,265
JBrowse link
G Npr2 natriuretic peptide receptor 2 involved_in IEA
ISO
GO_REF:0000107
MGI:1856702|MGI:3522129|MGI:3774275 (PMID:15572448), (PMID:15722353), (PMID:17728275)
Ensembl
RGD
PMID:15572448 PMID:15722353 PMID:17728275 GO_REF:0000107 NCBI chr 5:57,883,171...57,901,590
Ensembl chr 5:57,883,171...57,901,580
JBrowse link
G Pex7 peroxisomal biogenesis factor 7 acts_upstream_of_or_within ISO MGI:3052739 (PMID:12915479) RGD PMID:12915479 NCBI chr 1:14,582,698...14,646,686
Ensembl chr 1:14,582,699...14,646,748
JBrowse link
G Phospho1 phosphoethanolamine/phosphocholine phosphatase 1 acts_upstream_of_or_within ISO MGI:5049904 (PMID:20684022) RGD PMID:20684022 NCBI chr10:80,762,062...80,769,596
Ensembl chr10:80,760,792...80,770,342
JBrowse link
G Pthlh parathyroid hormone-like hormone acts_upstream_of_or_within ISO MGI:2154515 (PMID:8895385) RGD PMID:8895385 NCBI chr 4:180,188,792...180,199,847
Ensembl chr 4:180,188,792...180,199,847
JBrowse link
G Runx2 RUNX family transcription factor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2176466 (PMID:10072783)
Ensembl
RGD
PMID:10072783 GO_REF:0000107 NCBI chr 9:16,167,504...16,492,826
Ensembl chr 9:16,167,482...16,492,167
JBrowse link
G Scx scleraxis bHLH transcription factor involved_in ISO (MGI:4418577|PMID:20059955) RGD PMID:20059955 MGI:4418577 NCBI chr 7:108,176,608...108,178,626
Ensembl chr 7:108,176,608...108,178,626
JBrowse link
G Sik3 SIK family kinase 3 acts_upstream_of_or_within ISO MGI:5317918 (PMID:22318228) RGD PMID:22318228 NCBI chr 8:46,312,253...46,522,444
Ensembl chr 8:46,311,989...46,522,444
JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1856877|MGI:3575405 (PMID:17591962), (PMID:21788370), (PMID:24505141)
Ensembl
RGD
PMID:17591962 PMID:21788370 PMID:24505141 GO_REF:0000107 NCBI chr19:34,162,337...34,245,786
Ensembl chr19:34,162,341...34,245,749
JBrowse link
G Tek TEK receptor tyrosine kinase IEP RGD PMID:11735002 RGD:1601509 NCBI chr 5:109,607,077...109,733,805
Ensembl chr 5:109,607,077...109,733,804
JBrowse link
G Tmem119 transmembrane protein 119 involved_in ISO (MGI:5543589|PMID:22416756) RGD PMID:22416756 MGI:5543589 NCBI chr12:42,828,621...42,835,678
Ensembl chr12:42,828,418...42,835,689
JBrowse link
frontal suture morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:1856276 (PMID:20570969) RGD PMID:20570969 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712
JBrowse link
G Msx2 msh homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1926381 (PMID:10742104)
Ensembl
RGD
PMID:10742104 GO_REF:0000107 NCBI chr17:11,097,214...11,102,879
Ensembl chr17:11,097,103...11,102,879
JBrowse link
G Tgfb1 transforming growth factor, beta 1 IEP RGD PMID:12416537 RGD:2302805 NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847
JBrowse link
G Tgfb2 transforming growth factor, beta 2 IEP RGD PMID:12416537 RGD:2302805 NCBI chr13:98,160,075...98,261,771
Ensembl chr13:98,160,087...98,261,405
JBrowse link
G Tgfb3 transforming growth factor, beta 3 IEP RGD PMID:12416537 RGD:2302805 NCBI chr 6:105,704,058...105,726,661
Ensembl chr 6:105,704,236...105,726,564
JBrowse link
growth plate cartilage axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stc1 stanniocalcin 1 involved_in ISO (PMID:16377640) RGD PMID:16377640 NCBI chr15:44,299,591...44,311,695
Ensembl chr15:44,299,621...44,310,264
JBrowse link
growth plate cartilage chondrocyte development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col27a1 collagen type XXVII alpha 1 chain involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:5315593 (PMID:22206015)
Ensembl
RGD
PMID:22206015 GO_REF:0000107 NCBI chr 5:76,647,302...76,765,989
Ensembl chr 5:76,647,429...76,765,174
JBrowse link
G Poc1a POC1 centriolar protein A acts_upstream_of_or_within ISO MGI:2135614 (PMID:26496357) RGD PMID:26496357 NCBI chr 8:106,922,058...106,991,678
Ensembl chr 8:106,922,978...106,991,089
JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:152,660,259...152,671,682
Ensembl chr 1:152,656,693...152,672,588
JBrowse link
growth plate cartilage chondrocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf2 activating transcription factor 2 involved_in IEA
ISO
GO_REF:0000107
MGI:1857283 (PMID:18638549)
Ensembl
RGD
PMID:18638549 GO_REF:0000107 NCBI chr 3:58,718,323...58,795,280
Ensembl chr 3:58,718,332...58,795,236
JBrowse link
G Ift80 intraflagellar transport 80 acts_upstream_of_or_within ISO MGI:3665440|MGI:5818514 (PMID:26098911) RGD PMID:26098911 NCBI chr 2:153,144,707...153,240,024
Ensembl chr 2:153,145,795...153,240,024
JBrowse link
G Nppc natriuretic peptide C involved_in ISS
ISO
GO_REF:0000024
(PMID:11259675)
(MGI:2177134|PMID:11259675)
UniProt
RGD
PMID:11259675 GO_REF:0000024 MGI:2177134 NCBI chr 9:87,320,051...87,324,251
Ensembl chr 9:87,320,051...87,324,251
JBrowse link
growth plate cartilage chondrocyte growth term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cst5 cystatin D involved_in ISO MGI:3629665 (PMID:16680148) RGD PMID:16680148 NCBI chr 3:137,573,194...137,577,754
Ensembl chr 3:137,573,194...137,577,754
JBrowse link
G Rarg retinoic acid receptor, gamma involved_in ISO (MGI:3848572|PMID:19389355) RGD PMID:19389355 MGI:3848572 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177
JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISS
ISO
GO_REF:0000024
(PMID:22421045)
(MGI:5317468|PMID:22421045)
UniProt
RGD
PMID:22421045 GO_REF:0000024 MGI:5317468 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2384513 (PMID:21420963)
Ensembl
RGD
PMID:21420963 GO_REF:0000107 NCBI chr 8:115,794,537...115,883,615
Ensembl chr 8:115,794,537...115,883,228
JBrowse link
growth plate cartilage chondrocyte morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Matn1 matrilin 1 acts_upstream_of_or_within ISO MGI:2153042|MGI:3663272 (PMID:16877353) RGD PMID:16877353 NCBI chr 5:143,117,198...143,127,140
Ensembl chr 5:143,117,504...143,127,059
JBrowse link
growth plate cartilage chondrocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf2 activating transcription factor 2 involved_in IEA
ISO
GO_REF:0000107
MGI:1857283 (PMID:18638549)
Ensembl
RGD
PMID:18638549 GO_REF:0000107 NCBI chr 3:58,718,323...58,795,280
Ensembl chr 3:58,718,332...58,795,236
JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist involved_in ISO (MGI:5315688|PMID:19113921) RGD PMID:19113921 MGI:5315688 NCBI chr 5:97,306,427...97,309,783
Ensembl chr 5:97,306,431...97,309,783
JBrowse link
G Nppc natriuretic peptide C involved_in ISS
ISO
GO_REF:0000024
(MGI:2177134|PMID:11259675)
UniProt
RGD
PMID:11259675 GO_REF:0000024 MGI:2177134 NCBI chr 9:87,320,051...87,324,251
Ensembl chr 9:87,320,051...87,324,251
JBrowse link
growth plate cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col2a1 collagen type II alpha 1 chain IEP spheno-occipital synchondrosis RGD PMID:20591638 RGD:8661256 NCBI chr 7:129,098,489...129,127,560
Ensembl chr 7:129,098,786...129,127,546
JBrowse link
G Col9a1 collagen type IX alpha 1 chain acts_upstream_of_or_within ISO MGI:2152964|MGI:88469|MGI:98737|MGI:98739 (PMID:18191556), (PMID:18467703) RGD PMID:18191556 PMID:18467703 NCBI chr 9:26,585,034...26,668,222
Ensembl chr 9:26,585,034...26,668,213
JBrowse link
G Comp cartilage oligomeric matrix protein involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2180787|MGI:3758741|MGI:88465|MGI:98737|MGI:98739 (PMID:17588960), (PMID:18191556), (PMID:18467703)
Ensembl
RGD
PMID:17588960 PMID:18191556 PMID:18467703 GO_REF:0000107 NCBI chr16:19,047,206...19,055,584
Ensembl chr16:19,047,207...19,055,845
JBrowse link
G Fosl2 FOS like 2, AP-1 transcription factor subunit involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:15509771)
Ensembl
RGD
PMID:15509771 GO_REF:0000107 NCBI chr 6:24,297,898...24,319,219
Ensembl chr 6:24,300,956...24,320,034
JBrowse link
G Ift80 intraflagellar transport 80 acts_upstream_of_or_within ISO MGI:3665440|MGI:5818514 (PMID:26098911), (PMID:32227389) RGD PMID:26098911 PMID:32227389 NCBI chr 2:153,144,707...153,240,024
Ensembl chr 2:153,145,795...153,240,024
JBrowse link
G Mmp13 matrix metallopeptidase 13 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:98729 (PMID:21444811)
Ensembl
RGD
PMID:21444811 GO_REF:0000107 NCBI chr 8:4,497,960...4,508,239
Ensembl chr 8:4,497,960...4,508,239
JBrowse link
G Npr2 natriuretic peptide receptor 2 involved_in IEA
ISO
GO_REF:0000107
MGI:3774275|MGI:4358115 (PMID:17728275), (PMID:23065701)
Ensembl
RGD
PMID:17728275 PMID:23065701 GO_REF:0000107 NCBI chr 5:57,883,171...57,901,590
Ensembl chr 5:57,883,171...57,901,580
JBrowse link
G Rara retinoic acid receptor, alpha acts_upstream_of_or_within ISO MGI:97858 (PMID:19389355) RGD PMID:19389355 NCBI chr10:83,883,490...83,928,932
Ensembl chr10:83,893,384...83,928,142
JBrowse link
G Rarb retinoic acid receptor, beta acts_upstream_of_or_within ISO MGI:97858 (PMID:19389355) RGD PMID:19389355 NCBI chr15:8,700,533...9,051,288
Ensembl chr15:8,406,492...9,051,288
JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within ISO MGI:97856|MGI:97857 (PMID:19389355) RGD PMID:19389355 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 acts_upstream_of_or_within ISO MGI:1340026 (PMID:21420963) RGD PMID:21420963 NCBI chr 8:115,794,537...115,883,615
Ensembl chr 8:115,794,537...115,883,228
JBrowse link
G Thbs1 thrombospondin 1 acts_upstream_of_or_within ISO MGI:2154534|MGI:88465|MGI:88469|MGI:98739 (PMID:18467703) RGD PMID:18467703 NCBI chr 3:105,056,293...105,071,445
Ensembl chr 3:105,056,292...105,071,440
JBrowse link
G Thbs3 thrombospondin 3 acts_upstream_of_or_within ISO MGI:3581964|MGI:88465|MGI:88469|MGI:98737 (PMID:18467703) RGD PMID:18467703 NCBI chr 2:174,621,788...174,633,594
Ensembl chr 2:174,621,812...174,633,594
JBrowse link
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO MGI:2180033 (PMID:11923874) RGD PMID:11923874 NCBI chr 5:134,627,218...134,660,360
Ensembl chr 5:134,627,229...134,660,110
JBrowse link
intramembranous bone growth term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fbln5 fibulin 5 involved_in ISO (MGI:5780490|PMID:26399686)
(PMID:26399686)
RGD PMID:26399686 MGI:5780490 NCBI chr 6:120,899,219...120,977,829
Ensembl chr 6:120,899,224...120,977,755
JBrowse link
lambdoid suture morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:1856276 (PMID:20570969) RGD PMID:20570969 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712
JBrowse link
mesenchymal cell differentiation involved in bone development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:20404326) RGD PMID:20404326 NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357
JBrowse link
G Mir222 microRNA 222 IMP RGD PMID:31691506 RGD:151893486 NCBI chr  X:3,428,904...3,429,006
Ensembl chr  X:3,428,904...3,429,006
JBrowse link
G Ranbp3l RAN binding protein 3-like involved_in ISO (MGI:5883200|PMID:25755279) RGD PMID:25755279 MGI:5883200 NCBI chr 2:58,057,887...58,113,158
Ensembl chr 2:58,058,263...58,113,172
JBrowse link
G Timp3 TIMP metallopeptidase inhibitor 3 IMP RGD PMID:31691506 RGD:151893486 NCBI chr 7:17,520,827...17,571,850
Ensembl chr 7:17,521,919...17,571,839
JBrowse link
negative regulation of bone development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bglap bone gamma-carboxyglutamate protein involved_in ISS
ISO
GO_REF:0000024
(PMID:8684484)
UniProt
RGD
PMID:8684484 GO_REF:0000024 NCBI chr 2:173,838,518...173,839,495
Ensembl chr 2:173,838,518...173,839,495
JBrowse link
G Dspp dentin sialophosphoprotein acts_upstream_of_or_within ISO MGI:2653208 (PMID:26972716) RGD PMID:26972716 NCBI chr14:5,565,562...5,571,669
Ensembl chr14:5,565,629...5,571,672
JBrowse link
G Rgn regucalcin IDA
IMP
RGD PMID:12239582 PMID:11129957 RGD:9681003, RGD:9590179 NCBI chr  X:1,619,030...1,634,456
Ensembl chr  X:1,619,032...1,634,450
JBrowse link
negative regulation of bone mineralization involved in bone maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Grem1 gremlin 1, DAN family BMP antagonist involved_in ISO (PMID:15539560) RGD PMID:15539560 NCBI chr 3:100,512,317...100,524,001
Ensembl chr 3:100,512,313...100,524,082
JBrowse link
G Pth parathyroid hormone involved_in IMP PMID:11604398 CAFA PMID:11604398 RGD:12793028 NCBI chr 1:167,508,121...167,511,530
Ensembl chr 1:167,508,598...167,511,530
JBrowse link
G Rflna refilin A involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:1923816 (PMID:24436304)
GO_Central
RGD
PMID:24436304 GO_REF:0000033 NCBI chr12:31,633,360...31,642,313
Ensembl chr12:31,633,361...31,642,317
JBrowse link
G Rflnb refilin B involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:1920371 (PMID:24436304)
GO_Central
RGD
PMID:24436304 GO_REF:0000033 NCBI chr10:60,893,693...60,899,970
Ensembl chr10:60,893,713...60,899,976
JBrowse link
negative regulation of growth plate cartilage chondrocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dspp dentin sialophosphoprotein acts_upstream_of_or_within ISO MGI:2653208 (PMID:26972716) RGD PMID:26972716 NCBI chr14:5,565,562...5,571,669
Ensembl chr14:5,565,629...5,571,672
JBrowse link
negative regulation of osteoclast development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cldn18 claudin 18 acts_upstream_of_or_within ISO MGI:5007067 (PMID:22437732) RGD PMID:22437732 NCBI chr 8:100,246,499...100,265,797
Ensembl chr 8:100,247,633...100,273,351
JBrowse link
G Fbn1 fibrillin 1 involved_in ISO (PMID:24039232)
(MGI:5795811|PMID:24039232)
RGD PMID:24039232 MGI:5795811 NCBI chr 3:112,554,257...112,750,835
Ensembl chr 3:112,554,925...112,750,889
JBrowse link
G Fbxw7 F-box and WD repeat domain containing 7 involved_in ISO (PMID:29149593)
(MGI:6106664|PMID:29149593)
RGD PMID:29149593 MGI:6106664 NCBI chr 2:170,149,706...170,311,536
Ensembl chr 2:170,149,694...170,309,941
JBrowse link
G Tjp2 tight junction protein 2 acts_upstream_of_or_within ISO (PMID:22437732) RGD PMID:22437732 NCBI chr 1:221,709,745...221,838,291
Ensembl chr 1:221,709,745...221,838,295
JBrowse link
ossification involved in bone maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts12 ADAM metallopeptidase with thrombospondin type 1 motif, 12 involved_in ISO MGI:1347346|MGI:2146046 (PMID:29618652) RGD PMID:29618652 NCBI chr 2:60,032,873...60,327,629
Ensembl chr 2:60,032,873...60,327,629
JBrowse link
G Adamts7 ADAM metallopeptidase with thrombospondin type 1 motif, 7 involved_in ISO MGI:1347346|MGI:2146046 (PMID:29618652) RGD PMID:29618652 NCBI chr 8:90,704,727...90,744,333
Ensembl chr 8:90,704,727...90,744,328
JBrowse link
G Dchs1 dachsous cadherin-related 1 acts_upstream_of_or_within ISO MGI:4867020 (PMID:21303848) RGD PMID:21303848 NCBI chr 1:160,104,931...160,138,958
Ensembl chr 1:160,104,931...160,124,808
JBrowse link
G Ebp EBP, cholestenol delta-isomerase involved_in ISO (PMID:10391219) RGD PMID:10391219 NCBI chr  X:14,299,427...14,305,826
Ensembl chr  X:14,299,448...14,305,826
JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:29415886) RGD PMID:29415886 NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357
JBrowse link
G Fat4 FAT atypical cadherin 4 acts_upstream_of_or_within ISO MGI:3846573 (PMID:21303848) RGD PMID:21303848 NCBI chr 2:121,927,266...122,056,700
Ensembl chr 2:121,927,942...122,056,707
JBrowse link
G Plxnb1 plexin B1 involved_in ISO (MGI:5297297|PMID:22019888) RGD PMID:22019888 MGI:5297297 NCBI chr 8:109,743,470...109,769,153
Ensembl chr 8:109,744,697...109,769,027
JBrowse link
G Rhoa ras homolog family member A involved_in ISO (MGI:5297297|PMID:22019888)
(PMID:22019888)
RGD PMID:22019888 MGI:5297297 NCBI chr 8:108,991,926...109,025,746
Ensembl chr 8:108,991,954...109,025,746
JBrowse link
G Ryr1 ryanodine receptor 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:18003898)
(MGI:3764002|PMID:18003898)
UniProt
RGD
PMID:18003898 GO_REF:0000024 MGI:3764002 NCBI chr 1:84,292,578...84,423,824
Ensembl chr 1:84,292,578...84,423,812
JBrowse link
G Sema4d semaphorin 4D involved_in ISO
IBA
(PMID:22019888)
GO_REF:0000033
(MGI:5297297|PMID:22019888)
RGD
GO_Central
PMID:22019888 GO_REF:0000033 MGI:5297297 NCBI chr17:13,430,324...13,537,146
Ensembl chr17:13,430,379...13,537,138
JBrowse link
G Thbs3 thrombospondin 3 acts_upstream_of_or_within ISO MGI:3581964 (PMID:15964815) RGD PMID:15964815 NCBI chr 2:174,621,788...174,633,594
Ensembl chr 2:174,621,812...174,633,594
JBrowse link
G Xylt1 xylosyltransferase 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:24161523)
(MGI:5544658|PMID:24161523)
UniProt
RGD
PMID:24161523 GO_REF:0000024 MGI:5544658 NCBI chr 1:171,643,925...171,929,774
Ensembl chr 1:171,643,925...171,926,783
JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 IMP RGD PMID:27727328 RGD:40924666 NCBI chr 8:48,989,376...49,177,011
Ensembl chr 8:48,994,566...49,177,011
JBrowse link
osteoclast development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa2 annexin A2 involved_in ISO (PMID:7961821) RGD PMID:7961821 NCBI chr 8:70,105,268...70,141,663
Ensembl chr 8:70,105,253...70,141,658
JBrowse link
G Atp6ap1 ATPase H+ transporting accessory protein 1 involved_in ISO
ISS
(MGI:5575464|PMID:22467241)
(PMID:22467241)
GO_REF:0000024
RGD
CAFA
PMID:22467241 GO_REF:0000024 MGI:5575464 NCBI chr  X:152,079,954...152,087,034
Ensembl chr  X:152,079,865...152,087,034
JBrowse link
G Foxp1 forkhead box P1 involved_in ISO (PMID:18799727) RGD PMID:18799727 NCBI chr 4:131,559,599...132,155,092
Ensembl chr 4:131,564,756...132,112,258
JBrowse link
G Gpr68 G protein-coupled receptor 68 acts_upstream_of ISO MGI:3849457 (PMID:19479052) RGD PMID:19479052 NCBI chr 6:120,135,620...120,166,089
Ensembl chr 6:120,135,436...120,166,089
JBrowse link
G Lrrk1 leucine-rich repeat kinase 1 acts_upstream_of_or_within ISO MGI:5568128|MGI:98397 (PMID:23526378) RGD PMID:23526378 NCBI chr 1:119,844,360...119,972,885
Ensembl chr 1:119,845,146...119,979,734
JBrowse link
G Mir34a microRNA 34a acts_upstream_of_or_within_negative_effect ISO (PMID:25043055) RGD PMID:25043055 NCBI chr 5:160,533,002...160,533,103
Ensembl chr 5:160,533,002...160,533,103
JBrowse link
G Pafah1b1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 acts_upstream_of_or_within ISO (PMID:22073305) RGD PMID:22073305 NCBI chr10:59,533,042...59,591,808
Ensembl chr10:59,534,117...59,591,808
JBrowse link
G Ptprv protein tyrosine phosphatase, receptor type, V IEP RGD PMID:7527035 RGD:632779 NCBI chr13:46,548,125...46,569,148
Ensembl chr13:46,548,128...46,568,329
JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase acts_upstream_of_or_within ISO MGI:2142227 (PMID:23526378) RGD PMID:23526378 NCBI chr 3:146,091,969...146,139,492
Ensembl chr 3:146,091,841...146,139,476
JBrowse link
G Tnfsf11 TNF superfamily member 11 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:21841309)
Ensembl
RGD
PMID:21841309 GO_REF:0000107 NCBI chr15:53,673,850...53,705,325
Ensembl chr15:53,673,877...53,705,445
JBrowse link
osteoclast maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fam20c FAM20C, golgi associated secretory pathway kinase acts_upstream_of_or_within ISO MGI:2656539|MGI:5428020 (PMID:22615579) RGD PMID:22615579 NCBI chr12:15,826,864...15,885,423
Ensembl chr12:15,826,871...15,884,543
JBrowse link
G P2rx5 purinergic receptor P2X 5 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr10:57,777,737...57,789,426
Ensembl chr10:57,777,819...57,789,423
JBrowse link
perichondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:28768899) RGD PMID:28768899 NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357
JBrowse link
positive regulation of bone development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ghrl ghrelin and obestatin prepropeptide IDA RGD PMID:12960077 RGD:12905040 NCBI chr 4:146,865,712...146,869,621
Ensembl chr 4:146,865,712...146,869,621
JBrowse link
G Tmem119 transmembrane protein 119 involved_in ISO (MGI:5700277|PMID:26207632) RGD PMID:26207632 MGI:5700277 NCBI chr12:42,828,621...42,835,678
Ensembl chr12:42,828,418...42,835,689
JBrowse link
positive regulation of bone mineralization involved in bone maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actn3 actinin alpha 3 involved_in ISO (MGI:5291888|PMID:21784188)
(PMID:21784188)
RGD PMID:21784188 MGI:5291888 NCBI chr 1:202,159,081...202,175,012
Ensembl chr 1:202,159,082...202,175,012
JBrowse link
G Asxl2 ASXL transcriptional regulator 2 acts_upstream_of_or_within ISO MGI:3840841 (PMID:21490954) RGD PMID:21490954 NCBI chr 6:26,425,017...26,514,899
Ensembl chr 6:26,425,954...26,507,477
JBrowse link
G Bmp2 bone morphogenetic protein 2 involved_in ISO
ISS
(PMID:16433617)
GO_REF:0000024
RGD
UniProt
PMID:16433617 GO_REF:0000024 NCBI chr 3:120,812,660...120,822,579
Ensembl chr 3:120,812,882...120,821,397
JBrowse link
positive regulation of osteoclast development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpr68 G protein-coupled receptor 68 acts_upstream_of_or_within ISO MGI:3849457 (PMID:19479052) RGD PMID:19479052 NCBI chr 6:120,135,620...120,166,089
Ensembl chr 6:120,135,436...120,166,089
JBrowse link
G Ninj1 ninjurin 1 involved_in ISO (MGI:6458683|PMID:30700695)
(PMID:30700695)
RGD PMID:30700695 MGI:6458683 NCBI chr17:15,452,804...15,461,684
Ensembl chr17:15,452,813...15,461,704
JBrowse link
G Slc9b2 solute carrier family 9 member B2 acts_upstream_of_or_within ISO (PMID:18269914) RGD PMID:18269914 NCBI chr 2:223,726,982...223,761,234
Ensembl chr 2:223,736,354...223,761,225
JBrowse link
G Tnfsf11 TNF superfamily member 11 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:18269914), (PMID:22437732), (PMID:23980096)
Ensembl
RGD
PMID:18269914 PMID:22437732 PMID:23980096 GO_REF:0000107 NCBI chr15:53,673,850...53,705,325
Ensembl chr15:53,673,877...53,705,445
JBrowse link
G Tyrobp transmembrane immune signaling adaptor Tyrobp involved_in ISO (MGI:3653295|PMID:14969392) RGD PMID:14969392 MGI:3653295 NCBI chr 1:85,672,931...85,676,856
Ensembl chr 1:85,672,994...85,676,848
JBrowse link
regulation of bone development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:3798847 (PMID:22841643) RGD PMID:22841643 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712
JBrowse link
G Kat2a lysine acetyltransferase 2A involved_in ISO (MGI:6377983|PMID:30424580)
(PMID:30424580)
RGD PMID:30424580 MGI:6377983 NCBI chr10:85,632,216...85,640,561
Ensembl chr10:85,632,216...85,640,166
JBrowse link
G Kdr kinase insert domain receptor involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:4422101 (PMID:22886301)
Ensembl
RGD
PMID:22886301 GO_REF:0000107 NCBI chr14:32,217,871...32,261,018
Ensembl chr14:32,217,871...32,261,018
JBrowse link
G Lox lysyl oxidase acts_upstream_of_or_within ISO MGI:2657016 (PMID:21665949) RGD PMID:21665949 NCBI chr18:45,964,544...45,977,431
Ensembl chr18:45,967,343...46,041,477
JBrowse link
G Tnn tenascin N involved_in ISO (MGI:3710297|PMID:17395156) RGD PMID:17395156 MGI:3710297 NCBI chr13:72,319,160...72,386,362
Ensembl chr13:72,319,155...72,408,156
JBrowse link
regulation of growth plate cartilage chondrocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Carm1 coactivator-associated arginine methyltransferase 1 acts_upstream_of_or_within ISO MGI:2663959 (PMID:19725955) RGD PMID:19725955 NCBI chr 8:20,097,262...20,141,950
Ensembl chr 8:20,097,254...20,147,689
JBrowse link
G Por cytochrome p450 oxidoreductase IMP positive regulation RGD PMID:19264869 RGD:2316785 NCBI chr12:20,951,058...20,999,198
Ensembl chr12:20,951,058...20,999,245
JBrowse link
regulation of osteoclast development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Notch2 notch receptor 2 involved_in ISO
IEA
ISS
(PMID:29149593)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:29149593 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:185,610,594...185,744,088
Ensembl chr 2:185,610,589...185,744,088
JBrowse link
G Siglec15 sialic acid binding Ig-like lectin 15 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:1277211 (PMID:22451653)
GO_Central
RGD
PMID:22451653 GO_REF:0000033 NCBI chr18:71,506,416...71,521,894
Ensembl chr18:71,505,399...71,521,881
JBrowse link
G Tyrobp transmembrane immune signaling adaptor Tyrobp acts_upstream_of_or_within ISO MGI:3646642 (PMID:22451653) RGD PMID:22451653 NCBI chr 1:85,672,931...85,676,856
Ensembl chr 1:85,672,994...85,676,848
JBrowse link
sagittal suture morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:1856276 (PMID:20570969) RGD PMID:20570969 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20133
    developmental process 7030
      anatomical structure development 6549
        animal organ development 3683
          bone development 260
            bone cell development + 21
            bone growth + 42
            bone marrow development 10
            bone maturation + 31
            bone morphogenesis + 118
            deltoid tuberosity development 3
            mesenchymal cell differentiation involved in bone development 4
            negative regulation of bone development 3
            positive regulation of bone development 2
            regulation of bone development + 10
Path 2
Term Annotations click to browse term
  biological_process 20133
    developmental process 7030
      anatomical structure development 6549
        multicellular organism development 5281
          system development 4562
            skeletal system development 578
              bone development 260
                bone cell development + 21
                bone growth + 42
                bone marrow development 10
                bone maturation + 31
                bone morphogenesis + 118
                deltoid tuberosity development 3
                mesenchymal cell differentiation involved in bone development 4
                negative regulation of bone development 3
                positive regulation of bone development 2
                regulation of bone development + 10
paths to the root