LOC100360522 (ribosomal protein P1-like) - Rat Genome Database

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Gene: LOC100360522 (ribosomal protein P1-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC100360522 (Ensembl: Rplp1)
Name: ribosomal protein P1-like (Ensembl:ribosomal protein lateral stalk subunit P1)
RGD ID: 2321935
Description: Predicted to be involved in translational elongation.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 60S acidic ribosomal protein P1
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8178,436,843 - 8,437,954 (-)NCBIGRCr8
mRatBN7.2178,431,634 - 8,432,745 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl862,393,177 - 62,395,339 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl178,431,465 - 8,435,348 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0179,233,473 - 9,234,857 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl866,862,143 - 66,863,476 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01711,392,282 - 11,393,662 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41714,407,574 - 14,407,959 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera178,515,972 - 8,517,056 (-)NCBICelera
Cytogenetic Map17p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:25002582  


Genomics

Variants

.
Variants in LOC100360522
18 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1354613Kidm14Kidney mass QTL 146.2kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)17429913035837242Rat
631499Stl1Serum triglyceride level QTL 13.6blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)17327139827389946Rat
2293664Bmd28Bone mineral density QTL 285.10.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)17435448727028127Rat
1300123Bp194Blood pressure QTL 1942.82arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)17211514934551001Rat
2324619Coatc4Coat color QTL 40.001coat/hair pigmentation trait (VT:0010463)pigmented dorsal coat/hair area to total dorsal coat/hair area ratio (CMO:0001811)17429913021293263Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17452803849528038Rat
70184BpQTLcluster14Blood pressure QTL cluster 143.38arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)17131990913Rat
1581553Pur14Proteinuria QTL 145.30.0001urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)17797996816317111Rat
631207Niddm41Non-insulin dependent diabetes mellitus QTL 41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)17137830672Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17429913060781592Rat
10401807Kidm52Kidney mass QTL 52kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17131701463Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17452803849528038Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
2293648Bmd31Bone mineral density QTL 314.50.0001femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)17435448727028127Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
1641902Colcr7Colorectal carcinoma resistance QTL 73.350.0044intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)17211514921881669Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
9590316Scort21Serum corticosterone level QTL 214.750.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17122871563Rat

Markers in Region
RPLP1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2862,395,183 - 62,395,271 (+)MAPPERmRatBN7.2
mRatBN7.2178,431,994 - 8,432,082 (+)MAPPERmRatBN7.2
Rnor_6.0866,863,319 - 66,863,406NCBIRnor6.0
Rnor_6.0179,234,720 - 9,234,807NCBIRnor6.0
Rnor_5.0866,595,700 - 66,595,787UniSTSRnor5.0
Rnor_5.01711,393,529 - 11,393,616UniSTSRnor5.0
RGSC_v3.4866,047,396 - 66,047,483UniSTSRGSC3.4
RGSC_v3.41714,407,913 - 14,408,000UniSTSRGSC3.4
Celera861,814,968 - 61,815,055UniSTS
Celera178,516,311 - 8,516,398UniSTS
Cytogenetic Map17p14UniSTS
Cytogenetic Map8q24UniSTS
PMC156124P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapXq31UniSTS
Cytogenetic Map8q24UniSTS
Cytogenetic Map18q12.1UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
3 11 43 82 57 60 41 19 41 160 73 74 35 41 19

Sequence


Ensembl Acc Id: ENSRNOT00000018820   ⟹   ENSRNOP00000018820
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl862,393,177 - 62,395,339 (-)Ensembl
Rnor_6.0 Ensembl866,862,143 - 66,863,476 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000107660   ⟹   ENSRNOP00000087435
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl178,431,606 - 8,435,348 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111700   ⟹   ENSRNOP00000092643
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl178,431,465 - 8,435,348 (-)Ensembl
RefSeq Acc Id: NM_001409300   ⟹   NP_001396229
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8178,436,843 - 8,437,954 (-)NCBI
mRatBN7.2178,431,634 - 8,432,745 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001396229 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Acc Id: ENSRNOP00000018820   ⟸   ENSRNOT00000018820
Ensembl Acc Id: ENSRNOP00000092643   ⟸   ENSRNOT00000111700
Ensembl Acc Id: ENSRNOP00000087435   ⟸   ENSRNOT00000107660
RefSeq Acc Id: NP_001396229   ⟸   NM_001409300
- UniProtKB: P19944 (UniProtKB/Swiss-Prot),   A6J567 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P19944-F1-model_v2 AlphaFold P19944 1-114 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2321935 AgrOrtholog
BioCyc Gene G2FUF-10246 BioCyc
Ensembl Genes ENSRNOG00000013874 Ensembl
  ENSRNOG00000063015 Ensembl
NCBI Gene 100360522 ENTREZGENE
PhenoGen LOC100360522 PhenoGen
RatGTEx ENSRNOG00000013874 RatGTEx
  ENSRNOG00000063015 RatGTEx
UniProt A6J567 ENTREZGENE
  P19944 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-05-06 LOC100360522  ribosomal protein P1-like      Symbol and Name status set to provisional 70820 PROVISIONAL