Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Col10a1 (collagen type X alpha 1 chain) Rattus norvegicus
Symbol: Col10a1
Name: collagen type X alpha 1 chain
RGD ID: 2371
Description: Involved in cartilage development and endochondral ossification. Localizes to collagen-containing extracellular matrix. Biomarker of degenerative disc disease. Human ortholog(s) of this gene implicated in Schmid metaphyseal chondrodysplasia and osteochondrodysplasia. Orthologous to human COL10A1 (collagen type X alpha 1 chain); PARTICIPATES IN syndecan signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 3,3',5-triiodo-L-thyronine.
Type: protein-coding
RefSeq Status: MODEL
Also known as: collagen alpha-1(X) chain; Collagen type X alpha 1; collagen, type X, alpha 1; LOW QUALITY PROTEIN: collagen alpha-1(X) chain; procollagen, type X, alpha 1
Homo sapiens (human) : COL10A1 (collagen type X alpha 1 chain)  HGNC  Alliance
Mus musculus (house mouse) : Col10a1 (collagen, type X, alpha 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col10a1 (collagen type X alpha 1 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL10A1 (collagen type X alpha 1 chain)
Canis lupus familiaris (dog) : COL10A1 (collagen type X alpha 1 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col10a1 (collagen type X alpha 1 chain)
Sus scrofa (pig) : COL10A1 (collagen type X alpha 1 chain)
Chlorocebus sabaeus (African green monkey) : COL10A1 (collagen type X alpha 1 chain)
Heterocephalus glaber (naked mole-rat) : Col10a1 (collagen type X alpha 1 chain)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Rat AssemblyChrPosition (strand)SourceGenome Browsers
Rnor_6.02041,180,295 - 41,190,664 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2041,184,287 - 41,189,633 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02042,909,408 - 42,919,566 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42038,725,164 - 38,731,513 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12038,752,633 - 38,754,523 (+)NCBI
Celera2038,959,927 - 38,970,291 (+)NCBICelera
Cytogenetic Map20q12NCBI
RH 3.4 Map20408.35RGD
JBrowse: View Region in Genome Browser (JBrowse)

Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated


Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status


RNA-SEQ Expression


Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
More on Col10a1
Alliance Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 2371
Created: 2000-05-25
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE


RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.