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ONTOLOGY REPORT - ANNOTATIONS

Term:modification-dependent protein catabolic process
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Accession:GO:0019941 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent modification of the target protein.
Synonyms:exact_synonym: modification-dependent protein breakdown;   modification-dependent protein catabolism;   modification-dependent protein degradation;   modification-dependent proteolysis;   modification-initiated protein catabolic process;   modification-initiated protein catabolism;   modification-initiated proteolysis
 narrow_synonym: protein-ligand-dependent protein catabolic process;   protein-ligand-dependent protein catabolism
 related_synonym: protein degradation tagging activity


show annotations for term's descendants           Sort by:
modification-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ISG15 ISG15 ubiquitin like modifier involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15485925) Ensembl
MGI		 PMID:15485925 GO_REF:0000107 Ensembl chr 1:927,418...928,491 JBrowse link
G KXD1 KxDL motif containing 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:18,034,887...18,046,603 JBrowse link
G LOC106634171 ubiquitin-ribosomal protein eS31 fusion protein-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:17,475,589...17,476,152 JBrowse link
G NEDD8 NEDD8 ubiquitin like modifier involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:4,993,011...5,008,620
Ensembl chr14:23,117,271...23,132,249 		JBrowse link
G RPS27A ribosomal protein S27a involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr2A:55,389,243...55,392,914
Ensembl chr2A:56,530,349...56,533,527 		JBrowse link
G UBA52 ubiquitin A-52 residue ribosomal protein fusion product 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:18,040,946...18,052,445 JBrowse link
G UBA7 ubiquitin like modifier activating enzyme 7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15485925) Ensembl
MGI		 PMID:15485925 GO_REF:0000107 NCBI chr 3:49,737,015...49,745,783
Ensembl chr 3:50,973,211...50,981,997 		JBrowse link
G UBB ubiquitin B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:35,286,699...35,288,429 JBrowse link
G UBC ubiquitin C involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:122,502,868...122,507,101 JBrowse link
G UBE2L6 ubiquitin conjugating enzyme E2 L6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15485925) Ensembl
MGI		 PMID:15485925 GO_REF:0000107 NCBI chr11:52,792,573...52,809,253
Ensembl chr11:56,264,907...56,274,733 		JBrowse link
anaphase-promoting complex-dependent catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANAPC1 anaphase promoting complex subunit 1 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chr2A:90,143,737...90,262,215 JBrowse link
G ANAPC10 anaphase promoting complex subunit 10 involved_in IEA InterPro GO_REF:0000002 NCBI chr 4:137,339,959...137,445,172
Ensembl chr 4:149,001,637...149,105,836 		JBrowse link
G ANAPC11 anaphase promoting complex subunit 11 involved_in IEA InterPro GO_REF:0000002 NCBI chr17:76,297,262...76,305,826
Ensembl chr17:82,002,135...82,007,921 		JBrowse link
G ANAPC13 anaphase promoting complex subunit 13 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chr 3:131,524,227...131,532,624
Ensembl chr 3:138,995,860...139,004,179 		JBrowse link
G ANAPC15 anaphase promoting complex subunit 15 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chr11:67,186,653...67,193,102
Ensembl chr11:70,411,031...70,416,484 		JBrowse link
G ANAPC16 anaphase promoting complex subunit 16 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chr10:68,738,800...68,758,677
Ensembl chr10:71,206,662...71,224,186 		JBrowse link
G ANAPC2 anaphase promoting complex subunit 2 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chr 9:108,234,949...108,248,227
Ensembl chr 9:137,204,356...137,217,652 		JBrowse link
G ANAPC4 anaphase promoting complex subunit 4 involved_in IEA UniProt
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chr 4:19,777,750...19,817,459
Ensembl chr 4:25,061,930...25,101,260 		JBrowse link
G ANAPC5 anaphase promoting complex subunit 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:118,906,482...118,950,913
Ensembl chr12:122,279,227...122,324,428 		JBrowse link
G ANAPC7 anaphase promoting complex subunit 7 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chr12:107,946,756...107,977,489
Ensembl chr12:111,338,045...111,368,466 		JBrowse link
G CDC16 cell division cycle 16 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:95,300,763...95,340,762
Ensembl chr13:114,369,774...114,407,267 		JBrowse link
G CDC20 cell division cycle 20 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:42,660,338...42,664,618
Ensembl chr 1:44,039,971...44,044,497 		JBrowse link
G CDC20B cell division cycle 20B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:58,856,370...58,918,463
Ensembl chr 5:60,478,977...60,538,264 		JBrowse link
G CDC23 cell division cycle 23 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:133,566,022...133,591,528
Ensembl chr 5:139,699,421...139,724,991 		JBrowse link
G CDC26 cell division cycle 26 involved_in IEA InterPro GO_REF:0000002 NCBI chr 9:84,364,810...84,373,406
Ensembl chr 9:112,736,864...112,745,466 		JBrowse link
G CDC27 cell division cycle 27 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:10,259,194...10,331,011
Ensembl chr17:10,473,646...10,545,549 		JBrowse link
G CUL3 cullin 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:10500095) MGI
Ensembl		 PMID:10500095 GO_REF:0000107 NCBI chr2B:111,714,533...111,827,080
Ensembl chr2B:230,289,195...230,378,991 		JBrowse link
G ECRG4 ECRG4 augurin precursor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20404145) Ensembl
MGI
TreeGrafter		 PMID:20404145 GO_REF:0000107 GO_REF:0000118 NCBI chr2A:95,762,149...95,774,834
Ensembl chr2A:107,140,895...107,152,967 		JBrowse link
G FBXO31 F-box protein 31 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:67,997,481...68,053,081
Ensembl chr16:87,322,364...87,377,104 		JBrowse link
G FZR1 fizzy and cell division cycle 20 related 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr19:2,533,172...2,564,301
Ensembl chr19:3,500,117...3,510,867 		JBrowse link
G LOC100967699 anaphase-promoting complex subunit 10-like involved_in IEA InterPro GO_REF:0000002 NCBI chr 1:51,509,349...51,510,537 JBrowse link
G RNF7 ring finger protein 7 involved_in IEA InterPro GO_REF:0000002 NCBI chr 3:138,772,581...138,780,763
Ensembl chr 3:146,369,779...146,377,233 		JBrowse link
G UBE2C ubiquitin conjugating enzyme E2 C involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:42,152,219...42,156,246
Ensembl chr20:43,239,382...43,243,464 		JBrowse link
G UBE2S ubiquitin conjugating enzyme E2 S involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:52,444,270...52,450,770
Ensembl chr19:61,133,934...61,140,786 		JBrowse link
CAT tailing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NEMF nuclear export mediator factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:30,372,390...30,441,660
Ensembl chr14:48,679,252...48,748,258 		JBrowse link
cytoplasm protein quality control by the ubiquitin-proteasome system term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RNF126 ring finger protein 126 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:491,699...494,175
Ensembl chr19:614,236...618,659 		JBrowse link
G UBR4 ubiquitin protein ligase E3 component n-recognin 4 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chr 1:18,032,528...18,168,954
Ensembl chr 1:19,079,779...19,215,578 		JBrowse link
G UBR5 ubiquitin protein ligase E3 component n-recognin 5 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chr 8:98,904,557...99,064,121
Ensembl chr 8:101,067,435...101,224,913 		JBrowse link
negative regulation of proteasomal ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAG5 BAG cochaperone 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:84,182,879...84,189,180
Ensembl chr14:103,997,524...103,998,927 		JBrowse link
G BAG6 BAG cochaperone 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:31,300,126...31,313,829
Ensembl chr 6:32,190,037...32,204,321 		JBrowse link
G CAMLG calcium modulating ligand involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:130,138,644...130,144,540
Ensembl chr 5:136,282,910...136,295,382 		JBrowse link
G CCAR2 cell cycle and apoptosis regulator 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:21,854,803...21,870,556
Ensembl chr 8:18,794,027...18,808,571 		JBrowse link
G CLEC16A C-type lectin domain containing 16A acts_upstream_of_or_within ISO (PMID:24949970) MGI PMID:24949970 NCBI chr16:9,887,877...10,124,500
Ensembl chr16:11,109,869...11,343,512 		JBrowse link
G CSNK2A1 casein kinase 2 alpha 1 involved_in ISO (PMID:28031292) ARUK-UCL PMID:28031292 NCBI chr20:689,494...752,092
Ensembl chr20:456,629...521,126 		JBrowse link
G CSNK2A2 casein kinase 2 alpha 2 involved_in ISO (PMID:28031292) ARUK-UCL PMID:28031292 NCBI chr16:38,426,399...38,466,575
Ensembl chr16:57,557,270...57,596,218 		JBrowse link
G CSNK2B casein kinase 2 beta involved_in ISO (PMID:28031292) ARUK-UCL PMID:28031292 NCBI chr 6:31,327,250...31,331,250 JBrowse link
G DDRGK1 DDRGK domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:3,276,292...3,290,433
Ensembl chr20:3,038,779...3,052,789 		JBrowse link
G EIF3H eukaryotic translation initiation factor 3 subunit H involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:113,320,059...113,440,769
Ensembl chr 8:115,863,490...115,973,872 		JBrowse link
G FHIT fragile histidine triad diadenosine triphosphatase involved_in ISO (PMID:15313915) UniProt PMID:15313915 NCBI chr 3:59,670,777...61,177,974 JBrowse link
G GIPC1 GIPC PDZ domain containing family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:14,041,192...14,059,402
Ensembl chr19:14,885,185...14,889,701 		JBrowse link
G HFE homeostatic iron regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:25,921,663...25,930,852
Ensembl chr 6:26,580,358...26,588,591 		JBrowse link
G HSP90AB1 heat shock protein 90 alpha family class B member 1 involved_in ISO (PMID:24613385) UniProt PMID:24613385 NCBI chr 6:43,842,796...43,849,637
Ensembl chr 6:45,125,773...45,133,872 		JBrowse link
G KLHL40 kelch like family member 40 acts_upstream_of_or_within ISO (PMID:24960163) MGI PMID:24960163 NCBI chr 3:42,592,977...42,600,100
Ensembl chr 3:43,657,128...43,664,055 		JBrowse link
G MAP1A microtubule associated protein 1A involved_in ISO (MGI:5703671|PMID:26609151) ARUK-UCL PMID:26609151 MGI:5703671 NCBI chr15:22,472,641...22,493,293
Ensembl chr15:40,627,099...40,647,752 		JBrowse link
G MTM1 myotubularin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23695157) Ensembl
MGI		 PMID:23695157 GO_REF:0000107 NCBI chr  X:140,218,742...140,323,495
Ensembl chr  X:150,174,758...150,255,381 		JBrowse link
G N4BP1 NEDD4 binding protein 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:28,809,881...28,881,352
Ensembl chr16:47,698,353...47,769,755 		JBrowse link
G NOP53 NOP53 ribosome biogenesis factor involved_in ISO (PMID:22522597) UniProt PMID:22522597 NCBI chr19:44,739,739...44,751,303 JBrowse link
G OGT O-linked N-acetylglucosamine (GlcNAc) transferase involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:60,798,219...60,840,948
Ensembl chr  X:70,852,687...70,894,921 		JBrowse link
G PANO1 proapoptotic nucleolar protein 1 involved_in ISO (PMID:22094112) UniProt PMID:22094112 NCBI chr11:814,040...816,633 JBrowse link
G PARK7 Parkinsonism associated deglycase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:6,722,260...6,745,915
Ensembl chr 1:7,969,280...7,993,271 		JBrowse link
G PBK PDZ binding kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21715333) Ensembl
MGI		 PMID:21715333 GO_REF:0000107 NCBI chr 8:27,084,789...27,112,986
Ensembl chr 8:24,285,395...24,313,658 		JBrowse link
G PHF20L1 PHD finger protein 20 like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:129,427,157...129,500,633
Ensembl chr 8:132,403,053...132,474,452 		JBrowse link
G RPL11 ribosomal protein L11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:22,883,157...22,887,806
Ensembl chr 1:23,868,688...23,873,313 		JBrowse link
G RPP21 ribonuclease P/MRP subunit p21 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:30,122,996...30,124,784
Ensembl chr 6:30,975,260...30,995,764 		JBrowse link
G RYBP RING1 and YY1 binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:72,315,494...72,389,328
Ensembl chr 3:74,247,807...74,318,398 		JBrowse link
G SENP1 SUMO specific peptidase 1 acts_upstream_of_or_within ISO (PMID:17981124) MGI PMID:17981124 NCBI chr12:40,624,200...40,689,837
Ensembl chr12:41,507,348...41,558,969 		JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16611981) Ensembl
MGI		 PMID:16611981 GO_REF:0000107 NCBI chr 7:147,400,112...147,414,036
Ensembl chr 7:159,114,666...159,126,651 		JBrowse link
G SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22285184) Ensembl
MGI		 PMID:22285184 GO_REF:0000107 NCBI chr 3:47,487,948...47,683,623
Ensembl chr 3:48,590,221...48,781,248 		JBrowse link
G TAF9 TATA-box binding protein associated factor 9 involved_in ISO (PMID:11278372) BHF-UCL PMID:11278372 NCBI chr 5:44,630,503...44,635,760 JBrowse link
G TLK2 tousled like kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:56,542,670...56,678,294
Ensembl chr17:61,689,998...61,830,394 		JBrowse link
G TRIM39 tripartite motif containing 39 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:30,104,381...30,121,649
Ensembl chr 6:30,975,260...30,995,764 		JBrowse link
G TTC36 tetratricopeptide repeat domain 36 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:31537781) Ensembl
MGI		 PMID:31537781 GO_REF:0000107 NCBI chr11:113,364,559...113,368,586
Ensembl chr11:117,295,191...117,298,928 		JBrowse link
G UBXN1 UBX domain protein 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr11:58,033,304...58,035,893
Ensembl chr11:61,386,797...61,389,404 		JBrowse link
G UCHL5 ubiquitin C-terminal hydrolase L5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:168,471,501...168,519,366
Ensembl chr 1:172,764,606...172,811,880 		JBrowse link
G USP26 ubiquitin specific peptidase 26 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:122,155,933...122,160,000
Ensembl chr  X:132,463,140...132,465,887 		JBrowse link
G USP38 ubiquitin specific peptidase 38 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:135,545,818...135,582,520
Ensembl chr 4:146,844,850...146,881,486 		JBrowse link
G USP7 ubiquitin specific peptidase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:7,825,332...7,895,095
Ensembl chr16:9,065,858...9,106,146 		JBrowse link
G USP9X ubiquitin specific peptidase 9 X-linked involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:33,535,543...33,683,220
Ensembl chr  X:41,232,041...41,379,910 		JBrowse link
G WAC WW domain containing adaptor with coiled-coil involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:28,685,294...28,777,176
Ensembl chr10:29,042,331...29,130,591 		JBrowse link
negative regulation of SCF-dependent proteasomal ubiquitin-dependent catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PABPN1L PABPN1 like, cytoplasmic acts_upstream_of_or_within ISO (PMID:32558204) MGI PMID:32558204 NCBI chr16:69,579,421...69,583,803
Ensembl chr16:89,234,156...89,237,595 		JBrowse link
G STYX serine/threonine/tyrosine interacting protein involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr14:33,326,587...33,371,399
Ensembl chr14:51,610,523...51,651,096 		JBrowse link
negative regulation of ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANKS1A ankyrin repeat and sterile alpha motif domain containing 1A acts_upstream_of_or_within ISO (PMID:20100865) MGI PMID:20100865 NCBI chr 6:34,450,695...34,653,881
Ensembl chr 6:35,548,124...35,776,185 		JBrowse link
G CDKN2A cyclin dependent kinase inhibitor 2A involved_in
acts_upstream_of_or_within		 ISO (PMID:16173922), (PMID:18560357)
(PMID:23277542)		 UniProt
MGI		 PMID:16173922 PMID:18560357 PMID:23277542 NCBI chr 9:21,803,862...21,831,322 JBrowse link
G CSNK2A2 casein kinase 2 alpha 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:38,426,399...38,466,575
Ensembl chr16:57,557,270...57,596,218 		JBrowse link
G HFE homeostatic iron regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:25,921,663...25,930,852
Ensembl chr 6:26,580,358...26,588,591 		JBrowse link
G HIPK2 homeodomain interacting protein kinase 2 involved_in ISO (PMID:21628596) FlyBase PMID:21628596 NCBI chr 7:131,506,711...131,722,943 JBrowse link
G LOC103785569 large ribosomal subunit protein uL18 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:160,751,687...160,752,671 JBrowse link
G LOC134730372 small ribosomal subunit protein eS7 involved_in IEA Ensembl GO_REF:0000107
G PDCL3 phosducin like 3 acts_upstream_of_or_within ISO (PMID:23792958) MGI PMID:23792958
G PML PML nuclear body scaffold involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:52,903,874...52,955,151
Ensembl chr15:71,658,884...71,710,883 		JBrowse link
G PRMT6 protein arginine methyltransferase 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:109,582,715...109,586,744
Ensembl chr 1:108,699,098...108,700,225 		JBrowse link
G PSEN1 presenilin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:53,718,299...53,802,684
Ensembl chr14:72,579,024...72,663,876 		JBrowse link
G PSEN2 presenilin 2 involved_in ISO (MGI:4887523|PMID:20208556) BHF-UCL PMID:20208556 MGI:4887523 NCBI chr 1:202,328,987...202,354,440
Ensembl chr 1:207,320,937...207,346,295 		JBrowse link
G QRICH2 glutamine rich 2 involved_in ISO (PMID:30683861)
(MGI:6277293|PMID:30683861)		 UniProt PMID:30683861 MGI:6277293 NCBI chr17:70,222,033...70,256,747
Ensembl chr17:75,774,651...75,807,651 		JBrowse link
G RPL11 ribosomal protein L11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:22,883,157...22,887,806
Ensembl chr 1:23,868,688...23,873,313 		JBrowse link
G RPL23 ribosomal protein L23 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:18,417,964...18,421,708
Ensembl chr17:18,690,682...18,698,253 		JBrowse link
G RPL5 ribosomal protein L5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:95,497,047...95,507,006
Ensembl chr 1:94,230,451...94,241,522 		JBrowse link
G RPS7 ribosomal protein S7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:3,593,350...3,599,106
Ensembl chr2A:3,512,079...3,517,785 		JBrowse link
G SGTA small glutamine rich tetratricopeptide repeat co-chaperone alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:1,778,728...1,808,199
Ensembl chr19:2,736,565...2,763,440 		JBrowse link
G SUFU SUFU negative regulator of hedgehog signaling involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19684112) Ensembl
MGI		 PMID:19684112 GO_REF:0000107 NCBI chr10:99,107,516...99,231,761
Ensembl chr10:102,571,886...102,696,472 		JBrowse link
G SVIP small VCP interacting protein involved_in ISO PMID:17000876 ParkinsonsUK-UCL PMID:17000876 RGD:10047192 NCBI chr11:22,828,321...22,837,536
Ensembl chr11:22,735,361...22,744,558 		JBrowse link
G TAF1 TATA-box binding protein associated factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:60,630,137...60,729,904
Ensembl chr  X:70,684,217...70,782,323 		JBrowse link
G TRIM39 tripartite motif containing 39 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:30,104,381...30,121,649
Ensembl chr 6:30,975,260...30,995,764 		JBrowse link
G USP14 ubiquitin specific peptidase 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:14,104,754...14,158,402
Ensembl chr18:17,745,733...17,797,070 		JBrowse link
G USP5 ubiquitin specific peptidase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:6,983,941...6,998,469
Ensembl chr12:6,895,416...6,909,936 		JBrowse link
G WNT1 Wnt family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16601693) Ensembl
MGI		 PMID:16601693 GO_REF:0000107 NCBI chr12:39,767,839...39,772,460
Ensembl chr12:40,648,413...40,652,583 		JBrowse link
nuclear protein quality control by the ubiquitin-proteasome system term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKIRIN2 akirin 2 acts_upstream_of_positive_effect ISO (PMID:34711951) UniProt PMID:34711951 NCBI chr 6:85,549,728...85,577,114 JBrowse link
G CUL3 cullin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:111,714,533...111,827,080
Ensembl chr2B:230,289,195...230,378,991 		JBrowse link
G KLHL15 kelch like family member 15 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr  X:16,583,117...16,625,029
Ensembl chr  X:23,956,827...23,997,742 		JBrowse link
G UBR5 ubiquitin protein ligase E3 component n-recognin 5 involved_in ISO (PMID:37478846), (PMID:37478862) UniProt PMID:37478846 PMID:37478862 NCBI chr 8:98,904,557...99,064,121
Ensembl chr 8:101,067,435...101,224,913 		JBrowse link
oxidation-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LONP1 lon peptidase 1, mitochondrial involved_in IEA UniProt
Ensembl		 GO_REF:0000104 GO_REF:0000107 NCBI chr19:4,709,062...4,735,653
Ensembl chr19:5,644,525...5,670,956 		JBrowse link
positive regulation of anaphase-promoting complex-dependent catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDC20 cell division cycle 20 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:42,660,338...42,664,618
Ensembl chr 1:44,039,971...44,044,497 		JBrowse link
G CDC20B cell division cycle 20B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:58,856,370...58,918,463
Ensembl chr 5:60,478,977...60,538,264 		JBrowse link
G FZR1 fizzy and cell division cycle 20 related 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:2,533,172...2,564,301
Ensembl chr19:3,500,117...3,510,867 		JBrowse link
positive regulation of proteasomal ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKT1 AKT serine/threonine kinase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15937334) Ensembl
MGI		 PMID:15937334 GO_REF:0000107 NCBI chr14:85,417,229...85,444,722
Ensembl chr14:105,208,128...105,236,756 		JBrowse link
G ANKIB1 ankyrin repeat and IBR domain containing 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:84,243,929...84,399,358
Ensembl chr 7:97,841,233...97,995,816 		JBrowse link
G ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr15:51,423,132...51,534,278
Ensembl chr15:70,187,722...70,297,226 		JBrowse link
G ARIH2 ariadne RBR E3 ubiquitin protein ligase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:48,844,161...48,910,183
Ensembl chr 3:49,926,453...49,991,924 		JBrowse link
G ATG7 autophagy related 7 acts_upstream_of_or_within ISO (PMID:23152632) MGI PMID:23152632 NCBI chr 3:11,208,600...11,488,757
Ensembl chr 3:11,554,100...11,833,398 		JBrowse link
G AURKA aurora kinase A acts_upstream_of_or_within ISO (PMID:17060449) MGI PMID:17060449 NCBI chr20:52,707,757...52,730,579
Ensembl chr20:53,994,881...54,017,339 		JBrowse link
G AXIN1 axin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16601693) Ensembl
MGI
TreeGrafter		 PMID:16601693 GO_REF:0000107 GO_REF:0000118 Ensembl chr16:278,239...337,891 JBrowse link
G AXIN2 axin 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:59,476,336...59,509,358
Ensembl chr17:64,688,416...64,720,086 		JBrowse link
G BAG2 BAG cochaperone 2 NOT|involved_in ISO (MGI:6148635|PMID:19228967) ARUK-UCL PMID:19228967 MGI:6148635 NCBI chr 6:56,730,297...56,743,123
Ensembl chr 6:58,360,889...58,373,733 		JBrowse link
G BBS7 Bardet-Biedl syndrome 7 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:22302990) MGI
Ensembl		 PMID:22302990 GO_REF:0000107 NCBI chr 4:114,024,949...114,072,000
Ensembl chr 4:125,161,804...125,208,350 		JBrowse link
G CBFA2T3 CBFA2/RUNX1 partner transcriptional co-repressor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:69,592,293...69,662,321
Ensembl chr16:89,246,545...89,347,435 		JBrowse link
G CHFR checkpoint with forkhead and ring finger domains involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22285184) Ensembl
MGI		 PMID:22285184 GO_REF:0000107 NCBI chr12:130,318,971...130,366,282
Ensembl chr12:134,923,458...134,968,832
Ensembl chr12:134,923,458...134,968,832 		JBrowse link
G CLU clusterin involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:26,867,973...26,884,838
Ensembl chr 8:24,070,053...24,083,523 		JBrowse link
G COP1 COP1 E3 ubiquitin ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:151,459,354...151,727,131
Ensembl chr 1:155,156,185...155,425,156 		JBrowse link
G CSNK1A1 casein kinase 1 alpha 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:144,919,775...144,977,105
Ensembl chr 5:150,929,420...150,985,912 		JBrowse link
G CSNK1D casein kinase 1 delta involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:76,648,677...76,683,054
Ensembl chr17:82,462,467...82,494,348 		JBrowse link
G CSNK1E casein kinase 1 epsilon involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr22:19,202,599...19,229,344
Ensembl chr22:37,027,094...37,072,942 		JBrowse link
G DAB2 DAB adaptor protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:70,951,198...71,004,836
Ensembl chr 5:76,022,143...76,041,443 		JBrowse link
G DDA1 DET1 and DDB1 associated 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:16,797,750...16,808,427
Ensembl chr19:17,771,925...17,785,267 		JBrowse link
G DDRGK1 DDRGK domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:3,276,292...3,290,433
Ensembl chr20:3,038,779...3,052,789 		JBrowse link
G DET1 DET1 partner of COP1 E3 ubiquitin ligase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr15:67,203,101...67,238,185
Ensembl chr15:86,411,937...86,444,789 		JBrowse link
G DNAJB2 DnaJ heat shock protein family (Hsp40) member B2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr2B:106,536,846...106,544,430
Ensembl chr2B:225,127,967...225,135,556 		JBrowse link
G DVL1 dishevelled segment polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:92,469...106,748
Ensembl chr 1:1,292,052...1,301,008 		JBrowse link
G FBXO22 F-box protein 22 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19319192) TreeGrafter
MGI		 PMID:19319192 GO_REF:0000118 NCBI chr15:54,817,076...54,849,271
Ensembl chr15:74,410,213...74,441,609 		JBrowse link
G FBXW8 F-box and WD repeat domain containing 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:114,487,476...114,607,384
Ensembl chr12:117,863,254...117,983,269 		JBrowse link
G GABARAP GABA type A receptor-associated protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:7,270,316...7,272,365
Ensembl chr17:7,257,659...7,260,276 		JBrowse link
G GBA1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO (MGI:5501380|PMID:23707074) ParkinsonsUK-UCL PMID:23707074 MGI:5501380 NCBI chr 1:130,579,300...130,589,560
Ensembl chr 1:134,185,385...134,194,851 		JBrowse link
G GCLC glutamate-cysteine ligase catalytic subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17189825) Ensembl
MGI		 PMID:17189825 GO_REF:0000107 NCBI chr 6:53,052,145...53,102,794
Ensembl chr 6:54,687,315...54,734,994 		JBrowse link
G GSK3A glycogen synthase kinase 3 alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:39,118,330...39,130,768
Ensembl chr19:47,710,197...47,726,948 		JBrowse link
G GSK3B glycogen synthase kinase 3 beta involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22660580) Ensembl
MGI		 PMID:22660580 GO_REF:0000107 NCBI chr 3:116,943,205...117,215,001
Ensembl chr 3:123,861,379...124,126,771 		JBrowse link
G HSPA1A heat shock protein family A (Hsp70) member 1A involved_in ISO (PMID:24613385) UniProt PMID:24613385 NCBI chr 6:31,476,710...31,491,411 JBrowse link
G HSPA1B heat shock protein family A (Hsp70) member 1B involved_in ISO (PMID:24613385) UniProt PMID:24613385 NCBI chr 6:31,488,882...31,491,412 JBrowse link
G HSPBP1 HSPA (Hsp70) binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:52,303,121...52,322,771
Ensembl chr19:60,995,202...61,013,756 		JBrowse link
G IL33 interleukin 33 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22660580) Ensembl
MGI		 PMID:22660580 GO_REF:0000107 NCBI chr 9:6,027,014...6,069,540
Ensembl chr 9:6,234,178...6,248,624 		JBrowse link
G KLHL40 kelch like family member 40 involved_in ISO (MGI:5700633|PMID:25940086) UniProt PMID:25940086 MGI:5700633 NCBI chr 3:42,592,977...42,600,100
Ensembl chr 3:43,657,128...43,664,055 		JBrowse link
G LRRK2 leucine rich repeat kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:48,343,621...48,488,337
Ensembl chr12:49,205,930...49,350,462 		JBrowse link
G MAPK8 mitogen-activated protein kinase 8 involved_in ISO (MGI:6148490|PMID:29153991) UniProt PMID:29153991 MGI:6148490 NCBI chr10:45,806,748...45,936,362 JBrowse link
G MAPK9 mitogen-activated protein kinase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:175,437,167...175,495,469
Ensembl chr 5:182,748,381...182,795,135 		JBrowse link
G MDM2 MDM2 proto-oncogene involved_in ISO (PMID:11278372) BHF-UCL PMID:11278372 NCBI chr12:66,322,340...66,357,010
Ensembl chr12:69,102,084...69,133,278 		JBrowse link
G NKD2 NKD inhibitor of WNT signaling pathway 2 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 5:1,075,172...1,081,664 JBrowse link
G NOP53 NOP53 ribosome biogenesis factor involved_in ISO (PMID:25818168), (PMID:27323397)
(MGI:5897550|PMID:21804542)		 UniProt PMID:21804542 PMID:25818168 PMID:27323397 MGI:5897550 NCBI chr19:44,739,739...44,751,303 JBrowse link
G NUB1 negative regulator of ubiquitin like proteins 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:142,927,730...142,964,475
Ensembl chr 7:155,079,243...155,114,676 		JBrowse link
G PABIR1 PP2A Aalpha (PPP2R1A) and B55A (PPP2R2A) interacting phosphatase regulator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:56,007,323...56,011,655
Ensembl chr 9:67,544,489...67,545,352 		JBrowse link
G PIAS1 protein inhibitor of activated STAT 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:47,006,718...47,141,035
Ensembl chr15:65,276,530...65,410,105 		JBrowse link
G PLK1 polo like kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:14,420,972...14,432,821
Ensembl chr16:23,928,773...23,940,779 		JBrowse link
G PLK2 polo like kinase 2 ISO RGD PMID:18723513 RGD:7241135 NCBI chr 5:55,543,828...55,550,116
Ensembl chr 5:57,177,836...57,184,793 		JBrowse link
G PRICKLE1 prickle planar cell polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:46,127,673...46,262,333
Ensembl chr12:47,100,393...47,126,102 		JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:159,293,016...160,679,106
Ensembl chr 6:164,314,990...165,678,770 		JBrowse link
G PSEN1 presenilin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:53,718,299...53,802,684
Ensembl chr14:72,579,024...72,663,876 		JBrowse link
G PSEN2 presenilin 2 involved_in ISO (MGI:4887523|PMID:20208556) BHF-UCL PMID:20208556 MGI:4887523 NCBI chr 1:202,328,987...202,354,440
Ensembl chr 1:207,320,937...207,346,295 		JBrowse link
G PSMD10 proteasome 26S subunit, non-ATPase 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:97,182,090...97,189,523
Ensembl chr  X:107,552,186...107,559,616 		JBrowse link
G RACK1 receptor for activated C kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:176,462,991...176,470,153
Ensembl chr 5:183,712,665...183,720,128 		JBrowse link
G RAD23A RAD23 homolog A, nucleotide excision repair protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:12,508,232...12,516,068
Ensembl chr19:13,250,718...13,258,482 		JBrowse link
G RBX1 ring-box 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:21,845,351...21,866,627
Ensembl chr22:39,941,405...39,962,175 		JBrowse link
G RCHY1 ring finger and CHY zinc finger domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:48,691,213...48,725,979
Ensembl chr 4:54,526,202...54,561,048 		JBrowse link
G RFPL1 ret finger protein like 1 involved_in ISO (PMID:20725088) UniProt PMID:20725088
G RNF14 ring finger protein 14 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:137,316,493...137,351,061
Ensembl chr 5:143,441,497...143,461,355 		JBrowse link
G RNF144A ring finger protein 144A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr2A:6,925,266...7,082,731
Ensembl chr2A:7,085,369...7,184,838 		JBrowse link
G RNF144B ring finger protein 144B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:18,124,935...18,316,842
Ensembl chr 6:18,586,953...18,668,674 		JBrowse link
G RNF180 ring finger protein 180 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18363970), (PMID:23926250) Ensembl
MGI
TreeGrafter		 PMID:18363970 PMID:23926250 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:49,624,452...49,841,741
Ensembl chr 5:51,280,064...51,454,750 		JBrowse link
G RNF19A ring finger protein 19A, RBR E3 ubiquitin protein ligase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:96,897,388...96,950,440
Ensembl chr 8:99,070,813...99,123,495 		JBrowse link
G RNF19B ring finger protein 19B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:32,228,220...32,256,745
Ensembl chr 1:33,414,611...33,441,986 		JBrowse link
G RNF217 ring finger protein 217 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:122,747,128...122,875,930
Ensembl chr 6:126,867,604...126,992,867 		JBrowse link
G SH3RF1 SH3 domain containing ring finger 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:161,319,093...161,495,917
Ensembl chr 4:173,394,739...173,567,096 		JBrowse link
G SH3RF2 SH3 domain containing ring finger 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:141,386,060...141,530,993
Ensembl chr 5:147,401,188...147,545,703 		JBrowse link
G SH3RF3 SH3 domain containing ring finger 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr2A:92,137,951...92,519,627
Ensembl chr2A:110,848,452...111,219,915 		JBrowse link
G SIRT2 sirtuin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:35,984,453...36,005,582
Ensembl chr19:44,533,965...44,554,799 		JBrowse link
G SIRT6 sirtuin 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:3,196,092...3,204,602
Ensembl chr19:4,146,057...4,154,126 		JBrowse link
G SOCS4 suppressor of cytokine signaling 4 involved_in IEA InterPro GO_REF:0000002 NCBI chr14:35,614,238...35,636,531
Ensembl chr14:53,904,783...53,906,105 		JBrowse link
G SOCS5 suppressor of cytokine signaling 5 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr2A:46,813,589...46,878,102
Ensembl chr2A:47,804,431...47,806,041 		JBrowse link
G STUB1 STIP1 homology and U-box containing protein 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr16:694,414...696,682 JBrowse link
G SUMO1 small ubiquitin like modifier 1 involved_in ISO (PMID:18408734) UniProt PMID:18408734 NCBI chr2B:89,461,773...89,493,879
Ensembl chr2B:207,613,654...207,645,590 		JBrowse link
G SUMO2 small ubiquitin like modifier 2 involved_in ISO (PMID:18408734) UniProt PMID:18408734 NCBI chr17:69,115,433...69,130,065 JBrowse link
G TAF1 TATA-box binding protein associated factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:60,630,137...60,729,904
Ensembl chr  X:70,684,217...70,782,323 		JBrowse link
G TRIB1 tribbles pseudokinase 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:122,115,194...122,123,319
Ensembl chr 8:124,867,359...124,872,924 		JBrowse link
G TRIB2 tribbles pseudokinase 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr2A:12,705,043...12,730,932
Ensembl chr2A:12,847,631...12,873,499 		JBrowse link
G TRIB3 tribbles pseudokinase 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:583,267...605,416
Ensembl chr20:359,879...375,486 		JBrowse link
G UBE2V2 ubiquitin conjugating enzyme E2 V2 ISO RGD PMID:12750002 RGD:1299567 NCBI chr 8:44,435,496...44,488,517
Ensembl chr 8:41,856,429...41,878,320 		JBrowse link
G USP5 ubiquitin specific peptidase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:6,983,941...6,998,469
Ensembl chr12:6,895,416...6,909,936 		JBrowse link
G VCP valosin containing protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:34,907,147...34,923,227
Ensembl chr 9:35,712,937...35,729,588 		JBrowse link
G ZER1 zyg-11 related cell cycle regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:99,853,433...99,895,399
Ensembl chr 9:128,519,972...128,560,098 		JBrowse link
G ZFAND2A zinc finger AN1-type containing 2A acts_upstream_of_or_within ISO (PMID:16973439) MGI PMID:16973439 NCBI chr 7:1,392,979...1,401,283
Ensembl chr 7:1,518,912...1,526,107 		JBrowse link
G ZYG11B zyg-11 family member B, cell cycle regulator involved_in ISO (PMID:31273098) UniProt PMID:31273098 NCBI chr 1:51,987,678...52,087,093 JBrowse link
positive regulation of proteasomal ubiquitin-dependent protein catabolic process involved in cellular response to hypoxia term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PLK3 polo like kinase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:44,104,564...44,110,162
Ensembl chr 1:45,470,016...45,476,021 		JBrowse link
positive regulation of ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATXN3 ataxin 3 involved_in ISO (PMID:17000876) ParkinsonsUK-UCL PMID:17000876 NCBI chr14:72,693,446...72,741,772 JBrowse link
G AXIN1 axin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16601693) Ensembl
MGI		 PMID:16601693 GO_REF:0000107 Ensembl chr16:278,239...337,891 JBrowse link
G BCAP31 B cell receptor associated protein 31 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:143,265,920...143,274,956
Ensembl chr  X:153,137,992...153,161,628 		JBrowse link
G CCDC22 coiled-coil domain containing 22 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr  X:41,535,439...41,550,547
Ensembl chr  X:49,387,980...49,402,742 		JBrowse link
G CDK5RAP3 CDK5 regulatory subunit associated protein 3 NOT|involved_in ISO (PMID:16173922) UniProt PMID:16173922 NCBI chr17:9,556,313...9,567,099
Ensembl chr17:9,738,141...9,749,302 		JBrowse link
G CLU clusterin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:26,867,973...26,884,838
Ensembl chr 8:24,070,053...24,083,523 		JBrowse link
G DISC1 DISC1 scaffold protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20880836) Ensembl
MGI		 PMID:20880836 GO_REF:0000107 NCBI chr 1:207,180,513...207,594,684
Ensembl chr 1:212,265,520...212,612,079 		JBrowse link
G EGF epidermal growth factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:102,410,724...102,509,691
Ensembl chr 4:112,977,565...113,076,460 		JBrowse link
G FBXO22 F-box protein 22 acts_upstream_of_or_within ISO (PMID:19319192) MGI PMID:19319192 NCBI chr15:54,817,076...54,849,271
Ensembl chr15:74,410,213...74,441,609 		JBrowse link
G FBXW7 F-box and WD repeat domain containing 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:144,660,676...144,874,404
Ensembl chr 4:156,312,274...156,402,351 		JBrowse link
G HERPUD1 homocysteine inducible ER protein with ubiquitin like domain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:37,210,170...37,221,961
Ensembl chr16:56,343,025...56,355,164 		JBrowse link
G L3MBTL3 L3MBTL histone methyl-lysine binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:127,814,847...127,938,220
Ensembl chr 6:131,922,967...132,045,708 		JBrowse link
G LAPTM5 lysosomal protein transmembrane 5 involved_in ISO (MGI:3803048|PMID:18619870)
(MGI:6478861|PMID:24638062)		 ARUK-UCL PMID:18619870 PMID:24638062 MGI:3803048 MGI:6478861 NCBI chr 1:30,005,941...30,031,366
Ensembl chr 1:31,032,963...31,058,385 		JBrowse link
G LOC100967527 AGBL carboxypeptidase 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:29593216) Ensembl
MGI		 PMID:29593216 GO_REF:0000107 NCBI chr 1:47,807,888...49,264,213
Ensembl chr 1:49,511,379...49,560,314
Ensembl chr 1:49,511,379...49,560,314 		JBrowse link
G LOC100970998 small ubiquitin like modifier 3 acts_upstream_of_or_within ISO (PMID:18644859) MGI PMID:18644859 NCBI chr 1:224,215,377...224,217,052 JBrowse link
G MAGEF1 MAGE family member F1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:181,750,186...181,751,900
Ensembl chr 3:190,229,865...190,230,791 		JBrowse link
G PTEN phosphatase and tensin homolog involved_in ISO (PMID:21241890) BHF-UCL PMID:21241890 NCBI chr10:84,587,841...84,689,043
Ensembl chr10:88,093,539...88,194,605 		JBrowse link
G PTK2 protein tyrosine kinase 2 involved_in ISO (MGI:5306293|PMID:18206965) UniProt PMID:18206965 MGI:5306293 NCBI chr 8:137,330,777...137,677,306
Ensembl chr 8:140,412,773...140,684,898 		JBrowse link
G PTK2B protein tyrosine kinase 2 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:26,580,855...26,729,378
Ensembl chr 8:23,869,825...23,932,474 		JBrowse link
G PYHIN1 pyrin and HIN domain family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:134,283,998...134,329,531
Ensembl chr 1:138,081,611...138,127,115 		JBrowse link
G RNF139 ring finger protein 139 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:121,158,715...121,172,069
Ensembl chr 8:123,912,589...123,924,720 		JBrowse link
G SGTA small glutamine rich tetratricopeptide repeat co-chaperone alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:1,778,728...1,808,199
Ensembl chr19:2,736,565...2,763,440 		JBrowse link
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:90,995,923...91,112,240
Ensembl chr 7:104,500,965...104,568,046 		JBrowse link
G TGFB1I1 transforming growth factor beta 1 induced transcript 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:23,487,561...23,493,452
Ensembl chr16:31,842,437...31,848,327 		JBrowse link
G TRAF7 TNF receptor associated factor 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:1,013,831...1,036,486
Ensembl chr16:2,266,194...2,279,031 		JBrowse link
G TRIM67 tripartite motif containing 67 acts_upstream_of_or_within ISO (PMID:22337885) MGI PMID:22337885 NCBI chr 1:206,710,490...206,770,111 JBrowse link
G VCP valosin containing protein ISO RGD PMID:16103111 RGD:1599730 NCBI chr 9:34,907,147...34,923,227
Ensembl chr 9:35,712,937...35,729,588 		JBrowse link
prenylated protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PCYOX1 prenylcysteine oxidase 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr2A:70,313,204...70,335,361
Ensembl chr2A:71,429,514...71,449,292 		JBrowse link
G PCYOX1L prenylcysteine oxidase 1 like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:144,784,406...144,796,053
Ensembl chr 5:150,794,794...150,806,452 		JBrowse link
G ZMPSTE24 zinc metallopeptidase STE24 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11399759) Ensembl
MGI		 PMID:11399759 GO_REF:0000107 NCBI chr 1:39,545,264...39,589,721
Ensembl chr 1:40,869,076...40,912,747 		JBrowse link
proteasome-mediated ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGAP3 ArfGAP with GTPase domain, ankyrin repeat and PH domain 3 acts_upstream_of_or_within ISO (PMID:16461359) MGI PMID:16461359 NCBI chr 7:142,672,773...142,731,261
Ensembl chr 7:154,822,312...154,884,339 		JBrowse link
G AKT1 AKT serine/threonine kinase 1 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:15937334) Ensembl
MGI		 PMID:15937334 GO_REF:0000107 NCBI chr14:85,417,229...85,444,722
Ensembl chr14:105,208,128...105,236,756 		JBrowse link
G AMBRA1 autophagy and beclin 1 regulator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:46,355,026...46,556,091
Ensembl chr11:46,905,454...47,103,205 		JBrowse link
G ANKRD9 ankyrin repeat domain 9 involved_in ISO (PMID:30293565) UniProt PMID:30293565 NCBI chr14:83,122,024...83,128,173 JBrowse link
G APPBP2 amyloid beta precursor protein binding protein 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:54,528,229...54,611,458
Ensembl chr17:59,655,186...59,737,779 		JBrowse link
G ARMC8 armadillo repeat containing 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:135,214,895...135,328,235
Ensembl chr 3:142,665,419...142,774,903 		JBrowse link
G ARRB1 arrestin beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:70,319,935...70,411,276
Ensembl chr11:73,630,276...73,654,155 		JBrowse link
G ARRB2 arrestin beta 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:4,766,616...4,777,253
Ensembl chr17:4,757,048...4,767,517 		JBrowse link
G ASB2 ankyrin repeat and SOCS box containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:74,566,607...74,608,905
Ensembl chr14:93,900,914...93,930,527 		JBrowse link
G ATXN3 ataxin 3 involved_in ISO (MGI:5318000|PMID:21855799) UniProt PMID:21855799 MGI:5318000 NCBI chr14:72,693,446...72,741,772 JBrowse link
G AURKA aurora kinase A acts_upstream_of ISO (PMID:17060449) MGI PMID:17060449 NCBI chr20:52,707,757...52,730,579
Ensembl chr20:53,994,881...54,017,339 		JBrowse link
G BAG6 BAG cochaperone 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:31,300,126...31,313,829
Ensembl chr 6:32,190,037...32,204,321 		JBrowse link
G BFAR bifunctional apoptosis regulator involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:13,558,912...13,597,023
Ensembl chr16:14,980,615...15,018,310 		JBrowse link
G BIRC2 baculoviral IAP repeat containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:97,298,736...97,324,966
Ensembl chr11:100,793,036...100,822,421 		JBrowse link
G BMAL1 basic helix-loop-helix ARNT like 1 involved_in ISO (MGI:5495336|PMID:23395176) UniProt PMID:23395176 MGI:5495336 NCBI chr11:13,436,580...13,547,135
Ensembl chr11:13,163,028...13,240,376 		JBrowse link
G BTRC beta-transducin repeat containing E3 ubiquitin protein ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:97,958,527...98,159,550
Ensembl chr10:101,431,318...101,632,496 		JBrowse link
G CD2AP CD2 associated protein ISO RGD PMID:15001553 RGD:1302417 NCBI chr 6:47,065,284...47,210,746
Ensembl chr 6:48,328,863...48,474,163 		JBrowse link
G CDC34 cell division cycle 34, ubiqiutin conjugating enzyme involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:592,856...602,811
Ensembl chr19:502,766...512,173 		JBrowse link
G CLEC16A C-type lectin domain containing 16A acts_upstream_of ISO (PMID:24949970) MGI PMID:24949970 NCBI chr16:9,887,877...10,124,500
Ensembl chr16:11,109,869...11,343,512 		JBrowse link
G CLOCK clock circadian regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:68,391,310...68,509,813
Ensembl chr 4:75,018,898...75,066,726 		JBrowse link
G COP1 COP1 E3 ubiquitin ligase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:151,459,354...151,727,131
Ensembl chr 1:155,156,185...155,425,156 		JBrowse link
G CRBN cereblon involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:3,091,328...3,121,364
Ensembl chr 3:3,190,979...3,225,345 		JBrowse link
G CTNNB1 catenin beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:41,104,940...41,145,934
Ensembl chr 3:41,373,726...41,414,030 		JBrowse link
G CUL1 cullin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:140,428,442...140,531,136
Ensembl chr 7:152,908,303...153,011,254 		JBrowse link
G CUL3 cullin 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20811152) Ensembl
MGI		 PMID:20811152 GO_REF:0000107 NCBI chr2B:111,714,533...111,827,080
Ensembl chr2B:230,289,195...230,378,991 		JBrowse link
G CUL4A cullin 4A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16467204) Ensembl
MGI		 PMID:16467204 GO_REF:0000107 NCBI chr13:94,350,484...94,409,183
Ensembl chr13:113,428,271...113,472,701 		JBrowse link
G DCAF11 DDB1 and CUL4 associated factor 11 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:4,890,956...4,900,296
Ensembl chr14:23,015,680...23,024,650 		JBrowse link
G DCAF13 DDB1 and CUL4 associated factor 13 involved_in ISO (PMID:30111536), (PMID:31492966) UniProt PMID:30111536 PMID:31492966 NCBI chr 8:100,070,628...100,098,885
Ensembl chr 8:102,226,116...102,254,900 		JBrowse link
G DDB1 damage specific DNA binding protein 1 involved_in IEA UniProt
TreeGrafter
Ensembl		 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr11:56,599,422...56,633,140
Ensembl chr11:59,964,235...59,997,805 		JBrowse link
G DDIT3 DNA damage inducible transcript 3 involved_in ISO (PMID:17872950) UniProt PMID:17872950 NCBI chr12:31,406,332...31,410,293
Ensembl chr12:31,664,743...31,668,701 		JBrowse link
G DERL1 derlin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:119,707,397...119,736,502
Ensembl chr 8:122,463,063...122,492,137 		JBrowse link
G DNAJB2 DnaJ heat shock protein family (Hsp40) member B2 involved_in ISO (PMID:21625540) UniProt PMID:21625540 NCBI chr2B:106,536,846...106,544,430
Ensembl chr2B:225,127,967...225,135,556 		JBrowse link
G DTL denticleless E3 ubiquitin protein ligase homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:187,603,600...187,672,006
Ensembl chr 1:192,466,408...192,535,071 		JBrowse link
G DTX4 deltex E3 ubiquitin ligase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:54,389,228...54,425,655
Ensembl chr11:57,839,228...57,874,337 		JBrowse link
G EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 acts_upstream_of_or_within ISO (PMID:16431915) MGI PMID:16431915 NCBI chr 1:160,217,526...160,281,785
Ensembl chr 1:164,372,977...164,436,977 		JBrowse link
G EPM2A EPM2A glucan phosphatase, laforin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24914213) Ensembl
MGI		 PMID:24914213 GO_REF:0000107 NCBI chr 6:143,179,097...143,525,223 JBrowse link
G ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:53,053,712...53,131,563
Ensembl chr 5:54,693,987...54,765,496 		JBrowse link
G FAF2 Fas associated factor family member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:171,743,071...171,804,687
Ensembl chr 5:178,814,100...178,876,108 		JBrowse link
G FBXL17 F-box and leucine rich repeat protein 17 involved_in ISO (PMID:30190310) UniProt PMID:30190310 NCBI chr 5:103,214,110...103,739,494 JBrowse link
G FBXL19 F-box and leucine rich repeat protein 19 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:22660580) MGI
Ensembl		 PMID:22660580 GO_REF:0000107 NCBI chr16:24,020,365...24,046,217
Ensembl chr16:31,290,476...31,315,169 		JBrowse link
G FBXL22 F-box and leucine rich repeat protein 22 acts_upstream_of_or_within ISO (PMID:22972877) MGI PMID:22972877 NCBI chr15:42,543,909...42,548,938
Ensembl chr15:60,837,032...60,841,829 		JBrowse link
G FBXL3 F-box and leucine rich repeat protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:58,219,260...58,244,780
Ensembl chr13:77,266,496...77,283,651 		JBrowse link
G FBXO22 F-box protein 22 acts_upstream_of ISO (PMID:19319192) MGI PMID:19319192 NCBI chr15:54,817,076...54,849,271
Ensembl chr15:74,410,213...74,441,609 		JBrowse link
G FBXO45 F-box protein 45 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:193,913,712...193,934,123
Ensembl chr 3:203,856,374...203,876,537 		JBrowse link
G FBXO7 F-box protein 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:13,481,255...13,505,301
Ensembl chr22:31,335,423...31,359,224 		JBrowse link
G FBXO9 F-box protein 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:52,621,036...52,652,980
Ensembl chr 6:54,259,044...54,291,207 		JBrowse link
G FBXW11 F-box and WD repeat domain containing 11 involved_in ISO (PMID:10644755), (PMID:20347421) UniProt PMID:10644755 PMID:20347421 NCBI chr 5:167,207,643...167,354,730
Ensembl chr 5:174,124,499...174,271,977 		JBrowse link
G FBXW5 F-box and WD repeat domain containing 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:107,998,949...108,003,247
Ensembl chr 9:136,969,957...136,973,945 		JBrowse link
G FBXW7 F-box and WD repeat domain containing 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:144,660,676...144,874,404
Ensembl chr 4:156,312,274...156,402,351 		JBrowse link
G FEM1B fem-1 homolog B involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:47,236,920...47,254,878
Ensembl chr15:66,005,614...66,024,007 		JBrowse link
G FEM1C fem-1 homolog C involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:110,878,460...110,902,650
Ensembl chr 5:116,675,163...116,699,085 		JBrowse link
G GBA1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO (PMID:23707074) MGI PMID:23707074 NCBI chr 1:130,579,300...130,589,560
Ensembl chr 1:134,185,385...134,194,851 		JBrowse link
G GID8 GID complex subunit 8 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:59,325,193...59,335,588
Ensembl chr20:60,617,762...60,627,792 		JBrowse link
G GSK3A glycogen synthase kinase 3 alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:39,118,330...39,130,768
Ensembl chr19:47,710,197...47,726,948 		JBrowse link
G HECTD1 HECT domain E3 ubiquitin protein ligase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:11,871,973...11,979,548
Ensembl chr14:30,070,567...30,176,915 		JBrowse link
G HECTD3 HECT domain E3 ubiquitin protein ligase 3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:44,306,327...44,315,131
Ensembl chr 1:45,670,302...45,678,916 		JBrowse link
G IFI27 interferon alpha inducible protein 27 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:74,742,775...74,748,820
Ensembl chr14:94,046,694...94,082,022 		JBrowse link
G ITCH itchy E3 ubiquitin protein ligase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:30,690,172...30,840,504
Ensembl chr20:31,852,203...31,971,945 		JBrowse link
G KAT5 lysine acetyltransferase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:61,071,118...61,078,667
Ensembl chr11:64,404,572...64,412,667 		JBrowse link
G KBTBD6 kelch repeat and BTB domain containing 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:22,329,845...22,335,301
Ensembl chr13:40,921,761...40,923,813 		JBrowse link
G KCMF1 potassium channel modulatory factor 1 involved_in ISO (PMID:37891180), (PMID:38297121) UniProt PMID:37891180 PMID:38297121 NCBI chr2A:85,026,798...85,110,088
Ensembl chr2A:86,631,673...86,662,468 		JBrowse link
G KCTD10 potassium channel tetramerization domain containing 10 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:107,025,380...107,054,118
Ensembl chr12:110,419,859...110,448,773 		JBrowse link
G KCTD13 potassium channel tetramerization domain containing 13 involved_in IEA TreeGrafter GO_REF:0000118
G KCTD17 potassium channel tetramerization domain containing 17 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr22:17,965,397...17,977,048
Ensembl chr22:35,801,379...35,813,005 		JBrowse link
G KCTD5 potassium channel tetramerization domain containing 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:1,542,488...1,569,044
Ensembl chr16:2,796,117...2,822,819 		JBrowse link
G KIF14 kinesin family member 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:176,156,870...176,223,093
Ensembl chr 1:180,462,578...180,526,323 		JBrowse link
G KLHDC2 kelch domain containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:30,356,506...30,372,018
Ensembl chr14:48,668,025...48,679,105 		JBrowse link
G KLHDC3 kelch domain containing 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:42,606,462...42,613,565
Ensembl chr 6:43,900,902...43,908,556 		JBrowse link
G KLHL20 kelch like family member 20 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:149,232,858...149,303,357
Ensembl chr 1:152,937,835...153,008,239 		JBrowse link
G KLHL22 kelch like family member 22 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 Ensembl chr22:19,122,875...19,174,842 JBrowse link
G KLHL3 kelch like family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:133,005,563...133,276,087
Ensembl chr 5:139,147,793...139,248,919 		JBrowse link
G KLHL40 kelch like family member 40 acts_upstream_of ISO (PMID:24960163) MGI PMID:24960163 NCBI chr 3:42,592,977...42,600,100
Ensembl chr 3:43,657,128...43,664,055 		JBrowse link
G KLHL42 kelch like family member 42 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:58,509,031...58,531,891
Ensembl chr12:61,127,167...61,149,126 		JBrowse link
G LOC100972383 proteasome 20S subunit alpha 5 involved_in IEA InterPro GO_REF:0000002 NCBI chr 1:111,776,428...111,803,827
Ensembl chr 1:111,015,365...111,031,944 		JBrowse link
G LOC100976375 melanoma antigen preferentially expressed in tumors involved_in IEA Ensembl GO_REF:0000107
G LOC100976978 E3 ubiquitin-protein ligase HERC2 involved_in ISO (MGI:5780912|PMID:26692333) UniProt PMID:26692333 MGI:5780912 NCBI chr15:1,590,558...1,800,023
Ensembl chr15:25,536,483...25,746,074 		JBrowse link
G LOC100981597 BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 3-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:43,451,160...43,452,331 JBrowse link
G LOC100982140 kelch repeat and BTB domain-containing protein 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:22,397,204...22,401,999
Ensembl chr13:40,989,363...40,991,417 		JBrowse link
G LOC100995677 26S proteasome regulatory subunit 10B-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:52,496,558...52,508,697
Ensembl chr14:51,587,467...51,608,044 		JBrowse link
G LOC129392969 DDIT3 upstream open reading frame protein involved_in IEA Ensembl GO_REF:0000107 Ensembl chr12:31,664,743...31,668,701 JBrowse link
G MAEA macrophage erythroblast attacher, E3 ubiquitin ligase involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 4:1,432,848...1,485,764
Ensembl chr 4:1,315,810...1,366,448 		JBrowse link
G MARCHF6 membrane associated ring-CH-type finger 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:10,666,978...10,753,050
Ensembl chr 5:10,524,958...10,608,046 		JBrowse link
G MTA1 metastasis associated 1 involved_in ISO (PMID:19805145) UniProt PMID:19805145 NCBI chr14:86,058,412...86,111,736 JBrowse link
G MTM1 myotubularin 1 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:23695157) Ensembl
MGI		 PMID:23695157 GO_REF:0000107 NCBI chr  X:140,218,742...140,323,495
Ensembl chr  X:150,174,758...150,255,381 		JBrowse link
G NAGLU N-acetyl-alpha-glucosaminidase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19386237) Ensembl
MGI		 PMID:19386237 GO_REF:0000107 NCBI chr17:14,772,054...14,780,398
Ensembl chr17:14,996,420...15,004,242 		JBrowse link
G NEDD4L NEDD4 like E3 ubiquitin protein ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:51,428,077...51,792,995
Ensembl chr18:54,867,149...55,123,423 		JBrowse link
G NFE2L2 NFE2 like bZIP transcription factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:64,509,446...64,544,600
Ensembl chr2B:182,214,116...182,248,085 		JBrowse link
G NHLRC1 NHL repeat containing E3 ubiquitin protein ligase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24914213) Ensembl
MGI
TreeGrafter		 PMID:24914213 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:17,969,146...17,970,962
Ensembl chr 6:18,321,728...18,322,915 		JBrowse link
G NHLRC3 NHL repeat containing 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:20,249,985...20,261,803
Ensembl chr13:38,838,524...38,850,328 		JBrowse link
G NSFL1C NSFL1 cofactor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:1,597,171...1,622,708
Ensembl chr20:1,364,008...1,389,548 		JBrowse link
G OTUD5 OTU deubiquitinase 5 acts_upstream_of_or_within ISO (PMID:25470037) MGI PMID:25470037 NCBI chr  X:41,219,536...41,256,219 JBrowse link
G PBK PDZ binding kinase involved_in
acts_upstream_of		 IEA
ISO		 (PMID:21715333) Ensembl
MGI		 PMID:21715333 GO_REF:0000107 NCBI chr 8:27,084,789...27,112,986
Ensembl chr 8:24,285,395...24,313,658 		JBrowse link
G PCBP2 poly(rC) binding protein 2 involved_in ISO (PMID:19881509) UniProt PMID:19881509 NCBI chr12:35,273,540...35,301,292
Ensembl chr12:36,058,463...36,082,672 		JBrowse link
G PCNP PEST proteolytic signal containing nuclear protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:98,683,411...98,703,664
Ensembl chr 3:105,362,954...105,383,051 		JBrowse link
G PELI1 pellino E3 ubiquitin protein ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:64,160,362...64,213,200
Ensembl chr2A:65,284,480...65,336,339 		JBrowse link
G PJA2 praja ring finger ubiquitin ligase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:104,688,464...104,759,669
Ensembl chr 5:110,497,245...110,541,354 		JBrowse link
G PLAA phospholipase A2 activating protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:26,749,607...26,793,580
Ensembl chr 9:27,357,437...27,401,103 		JBrowse link
G PML PML nuclear body scaffold involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:52,903,874...52,955,151
Ensembl chr15:71,658,884...71,710,883 		JBrowse link
G PMP22 peripheral myelin protein 22 acts_upstream_of_or_within ISO (PMID:15748170) MGI PMID:15748170 NCBI chr17:36,389,549...36,425,161
Ensembl chr17:41,038,302...41,073,872 		JBrowse link
G PPP2CB protein phosphatase 2 catalytic subunit beta involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16717086) Ensembl
MGI		 PMID:16717086 GO_REF:0000107 NCBI chr 8:30,099,605...30,126,917
Ensembl chr 8:27,288,263...27,302,606 		JBrowse link
G PPP2R5C protein phosphatase 2 regulatory subunit B'gamma acts_upstream_of_or_within ISO (PMID:16717086) MGI PMID:16717086 NCBI chr14:82,383,086...82,549,822
Ensembl chr14:102,206,396...102,372,978 		JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:159,293,016...160,679,106
Ensembl chr 6:164,314,990...165,678,770 		JBrowse link
G PSMB3 proteasome 20S subunit beta 3 involved_in IEA InterPro GO_REF:0000002 NCBI chr17:18,509,375...18,526,743
Ensembl chr17:18,783,757...18,796,011 		JBrowse link
G PSMB5 proteasome 20S subunit beta 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15198663) Ensembl
MGI		 PMID:15198663 GO_REF:0000107 NCBI chr14:3,845,951...3,855,335
Ensembl chr14:21,943,432...21,952,169 		JBrowse link
G PSMC1 proteasome 26S subunit, ATPase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:70,873,846...70,889,988
Ensembl chr14:90,225,405...90,241,641 		JBrowse link
G PSMC2 proteasome 26S subunit, ATPase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:95,338,743...95,359,353
Ensembl chr 7:108,083,203...108,103,494 		JBrowse link
G PSMC3 proteasome 26S subunit, ATPase 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:47,366,986...47,374,677
Ensembl chr11:47,920,295...47,927,654 		JBrowse link
G PSMC4 proteasome 26S subunit, ATPase 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:37,018,112...37,028,490
Ensembl chr19:45,533,141...45,543,245 		JBrowse link
G PSMC5 proteasome 26S subunit, ATPase 5 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:57,906,934...57,911,551
Ensembl chr17:63,051,050...63,055,907 		JBrowse link
G PSMC6 proteasome 26S subunit, ATPase 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:33,303,689...33,324,502
Ensembl chr14:51,587,467...51,608,044 		JBrowse link
G PSMD1 proteasome 26S subunit, non-ATPase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr2B:118,313,158...118,428,636
Ensembl chr2B:237,102,623...237,215,322 		JBrowse link
G PSMD14 proteasome 26S subunit, non-ATPase 14 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr2B:48,602,395...48,705,229
Ensembl chr2B:165,972,229...166,074,879 		JBrowse link
G PSMD2 proteasome 26S subunit ubiquitin receptor, non-ATPase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:181,336,634...181,346,471
Ensembl chr 3:189,818,655...189,828,596 		JBrowse link
G PSMD4 proteasome 26S subunit ubiquitin receptor, non-ATPase 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:126,603,753...126,616,553
Ensembl chr 1:130,251,323...130,264,256 		JBrowse link
G PSMD6 proteasome 26S subunit, non-ATPase 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:63,912,457...63,925,443
Ensembl chr 3:65,291,696...65,304,861 		JBrowse link
G PSMD7 proteasome 26S subunit, non-ATPase 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:50,690,418...50,699,924
Ensembl chr16:74,140,338...74,149,833 		JBrowse link
G PSMD8 proteasome 26S subunit, non-ATPase 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:35,468,519...35,477,802
Ensembl chr19:44,040,252...44,049,265 		JBrowse link
G PSMF1 proteasome inhibitor subunit 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr20:1,275,662...1,325,410
Ensembl chr20:1,043,513...1,092,237 		JBrowse link
G RAD23A RAD23 homolog A, nucleotide excision repair protein involved_in IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chr19:12,508,232...12,516,068
Ensembl chr19:13,250,718...13,258,482 		JBrowse link
G RAD23B RAD23 homolog B, nucleotide excision repair protein involved_in IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chr 9:78,433,461...78,482,157
Ensembl chr 9:106,622,377...106,670,317 		JBrowse link
G RBCK1 RANBP2-type and C3HC4-type zinc finger containing 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:615,987...639,366
Ensembl chr20:386,569...409,580 		JBrowse link
G RBX1 ring-box 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:21,845,351...21,866,627
Ensembl chr22:39,941,405...39,962,175 		JBrowse link
G RFFL ring finger and FYVE like domain containing E3 ubiquitin protein ligase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:21,696,808...21,779,878
Ensembl chr17:22,035,643...22,069,546 		JBrowse link
G RHOBTB3 Rho related BTB domain containing 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:19,552,740...19,618,055
Ensembl chr 5:19,698,304...19,763,363 		JBrowse link
G RMND5A required for meiotic nuclear division 5 homolog A involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr2A:86,768,106...86,826,000
Ensembl chr2A:88,312,091...88,369,849 		JBrowse link
G RMND5B required for meiotic nuclear division 5 homolog B involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 5:173,290,007...173,307,663
Ensembl chr 5:180,548,381...180,565,094 		JBrowse link
G RNF122 ring finger protein 122 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:32,862,364...32,881,660
Ensembl chr 8:30,049,204...30,068,355 		JBrowse link
G RNF126 ring finger protein 126 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:491,699...494,175
Ensembl chr19:614,236...618,659 		JBrowse link
G RNF170 ring finger protein 170 acts_upstream_of_or_within ISO (PMID:31076723) MGI PMID:31076723 NCBI chr 8:42,097,900...42,145,327
Ensembl chr 8:39,541,479...39,588,163 		JBrowse link
G RNF186 ring finger protein 186 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:18,770,083...18,772,399
Ensembl chr 1:19,813,784...19,814,467 		JBrowse link
G RNF187 ring finger protein 187 involved_in ISO (PMID:20852630) UniProt PMID:20852630 NCBI chr 1:203,889,146...203,896,884
Ensembl chr 1:209,070,822...209,071,202
Ensembl chr 1:209,070,822...209,071,202 		JBrowse link
G RNF216 ring finger protein 216 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:5,872,118...6,037,073
Ensembl chr 7:5,891,909...6,051,979 		JBrowse link
G RNF34 ring finger protein 34 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr12:118,998,436...119,022,823
Ensembl chr12:122,373,172...122,402,693 		JBrowse link
G RNF4 ring finger protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:2,614,918...2,661,785
Ensembl chr 4:2,540,612...2,563,937 		JBrowse link
G SENP1 SUMO specific peptidase 1 acts_upstream_of ISO (PMID:17981124) MGI PMID:17981124 NCBI chr12:40,624,200...40,689,837
Ensembl chr12:41,507,348...41,558,969 		JBrowse link
G SH3BGRL SH3 domain binding glutamate rich protein like involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:70,268,591...70,367,132
Ensembl chr  X:80,372,945...80,471,646 		JBrowse link
G SHARPIN SHANK associated RH domain interactor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:140,865,009...140,870,580
Ensembl chr 8:143,854,902...143,862,888 		JBrowse link
G SIAH1 siah E3 ubiquitin protein ligase 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:28,627,021...28,651,343
Ensembl chr16:47,517,594...47,522,936 		JBrowse link
G SIAH2 siah E3 ubiquitin protein ligase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:147,759,375...147,781,639
Ensembl chr 3:155,332,751...155,354,139 		JBrowse link
G SIAH3 siah E3 ubiquitin protein ligase family member 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:27,180,382...27,255,005 JBrowse link
G SIRT1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:64,368,878...64,401,684
Ensembl chr10:66,681,598...66,715,069 		JBrowse link
G SIRT2 sirtuin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:35,984,453...36,005,582
Ensembl chr19:44,533,965...44,554,799 		JBrowse link
G SKP1 S-phase kinase associated protein 1 involved_in ISO (PMID:15145941), (PMID:34480022) UniProt PMID:15145941 PMID:34480022 NCBI chr 5:129,560,086...129,580,188
Ensembl chr 5:135,713,085...135,729,653 		JBrowse link
G SKP2 S-phase kinase associated protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:74,179,608...74,211,563
Ensembl chr 5:79,461,018...79,492,311 		JBrowse link
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:90,995,923...91,112,240
Ensembl chr 7:104,500,965...104,568,046 		JBrowse link
G SMURF2 SMAD specific E3 ubiquitin protein ligase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:58,638,995...58,759,443
Ensembl chr17:63,731,386...63,809,298 		JBrowse link
G SPOP speckle type BTB/POZ protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20811152) Ensembl
MGI
TreeGrafter		 PMID:20811152 GO_REF:0000107 GO_REF:0000118 NCBI chr17:43,685,913...43,765,277
Ensembl chr17:48,417,634...48,440,623 		JBrowse link
G SPOPL speckle type BTB/POZ protein like involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr2B:21,280,143...21,351,547
Ensembl chr2B:142,577,019...142,648,257 		JBrowse link
G SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:8,053,596...8,132,143
Ensembl chr 1:9,349,825...9,363,624 		JBrowse link
G SPSB2 splA/ryanodine receptor domain and SOCS box containing 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:7,002,783...7,005,365
Ensembl chr12:6,914,159...6,916,554 		JBrowse link
G SPSB3 splA/ryanodine receptor domain and SOCS box containing 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:399,090...405,020
Ensembl chr16:1,830,040...1,835,504 		JBrowse link
G SPSB4 splA/ryanodine receptor domain and SOCS box containing 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:138,085,136...138,181,747
Ensembl chr 3:145,682,533...145,779,049 		JBrowse link
G STUB1 STIP1 homology and U-box containing protein 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 Ensembl chr16:694,414...696,682 JBrowse link
G TBL1X transducin beta like 1 X-linked acts_upstream_of_or_within ISO (PMID:14980219) MGI PMID:14980219 NCBI chr  X:2,096,684...2,352,951
Ensembl chr  X:9,525,194...9,604,290 		JBrowse link
G TBL1XR1 TBL1X/Y related 1 acts_upstream_of_or_within ISO (PMID:14980219) MGI PMID:14980219 NCBI chr 3:174,067,964...174,251,913
Ensembl chr 3:182,247,335...182,429,619 		JBrowse link
G TBX21 T-box transcription factor 21 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:9,791,008...9,803,894
Ensembl chr17:9,973,920...9,985,660 		JBrowse link
G TNFAIP1 TNF alpha induced protein 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:28,427,448...28,438,826
Ensembl chr17:28,929,788...28,941,278 		JBrowse link
G TOPORS TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:32,314,850...32,327,067
Ensembl chr 9:33,124,730...33,135,129 		JBrowse link
G TRIM13 tripartite motif containing 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:31,137,236...31,153,398
Ensembl chr13:49,889,041...49,900,488 		JBrowse link
G TRIM2 tripartite motif containing 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:145,494,088...145,681,287
Ensembl chr 4:157,194,729...157,500,723
Ensembl chr 4:157,194,729...157,500,723 		JBrowse link
G TRIM26 tripartite motif containing 26 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:29,962,838...29,990,710
Ensembl chr 6:30,632,948...30,660,809 		JBrowse link
G TRIM3 tripartite motif containing 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:6,580,491...6,605,854
Ensembl chr11:6,264,376...6,281,033 		JBrowse link
G TRIM38 tripartite motif containing 38 acts_upstream_of_or_within ISO (PMID:22539786) MGI PMID:22539786 NCBI chr 6:25,796,278...25,818,610
Ensembl chr 6:26,454,051...26,475,842 		JBrowse link
G TRIM45 tripartite motif containing 45 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:85,398,904...85,409,600
Ensembl chr 1:120,394,090...120,403,622 		JBrowse link
G TRIM63 tripartite motif containing 63 acts_upstream_of_or_within ISO (PMID:15601779) MGI PMID:15601779 NCBI chr 1:25,309,949...25,373,658
Ensembl chr 1:26,378,373...26,392,041 		JBrowse link
G TRIM71 tripartite motif containing 71 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:32,745,217...32,824,985
Ensembl chr 3:33,050,997...33,123,910 		JBrowse link
G TRIM72 tripartite motif containing 72 acts_upstream_of_or_within ISO (PMID:23965929) MGI PMID:23965929 NCBI chr16:23,734,844...23,753,388 JBrowse link
G TRIM9 tripartite motif containing 9 involved_in ISO (PMID:20085810) UniProt PMID:20085810 NCBI chr14:31,577,859...31,844,298
Ensembl chr14:49,863,433...49,986,212 		JBrowse link
G TRIP12 thyroid hormone receptor interactor 12 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr2B:117,013,343...117,175,296
Ensembl chr2B:235,820,182...235,979,780 		JBrowse link
G UBE2A ubiquitin conjugating enzyme E2 A involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr  X:108,606,271...108,617,000
Ensembl chr  X:119,034,235...119,049,655 		JBrowse link
G UBE2B ubiquitin conjugating enzyme E2 B involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:129,775,011...129,794,853
Ensembl chr 5:135,925,217...135,944,609 		JBrowse link
G UBE2D1 ubiquitin conjugating enzyme E2 D1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:54,867,346...54,903,125
Ensembl chr10:57,087,811...57,123,581 		JBrowse link
G UBE2D3 ubiquitin conjugating enzyme E2 D3 involved_in
acts_upstream_of_or_within		 ISO (PMID:20347421)
(PMID:15601779)		 UniProt
MGI		 PMID:15601779 PMID:20347421 NCBI chr 4:95,218,319...95,293,053
Ensembl chr 4:105,883,133...105,900,546 		JBrowse link
G UBE2H ubiquitin conjugating enzyme E2 H involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23965929) Ensembl
MGI		 PMID:23965929 GO_REF:0000107 NCBI chr 7:121,796,629...121,917,981
Ensembl chr 7:134,318,166...134,437,295 		JBrowse link
G UBE2I ubiquitin conjugating enzyme E2 I ISO RGD PMID:9013644 RGD:730030 Ensembl chr16:1,367,288...1,382,575 JBrowse link
G UBE2K ubiquitin conjugating enzyme E2 K involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:34,026,942...34,111,923
Ensembl chr 4:39,877,966...39,960,397 		JBrowse link
G UBE2N ubiquitin conjugating enzyme E2 N involved_in ISO (PMID:35927303) UniProt PMID:35927303 NCBI chr12:90,951,446...90,984,075 JBrowse link
G UBE2U ubiquitin conjugating enzyme E2 U involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:63,458,063...63,521,812
Ensembl chr 1:65,346,777...65,410,228 		JBrowse link
G UBE2W ubiquitin conjugating enzyme E2 W involved_in ISO (MGI:5318000|PMID:21855799)
(PMID:35927303)		 UniProt PMID:21855799 PMID:35927303 MGI:5318000 NCBI chr 8:70,315,767...70,413,148 JBrowse link
G UBE3A ubiquitin protein ligase E3A involved_in ISO (MGI:6330832|PMID:30020076) UniProt PMID:30020076 MGI:6330832 NCBI chr15:4,494,029...4,595,415
Ensembl chr15:22,747,075...22,825,459 		JBrowse link
G UBE3D ubiquitin protein ligase E3D involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:80,729,751...80,962,322
Ensembl chr 6:84,062,079...84,236,860 		JBrowse link
G UBE4B ubiquitination factor E4B acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23509263) MGI
Ensembl		 PMID:23509263 GO_REF:0000107 NCBI chr 1:8,801,707...8,949,465
Ensembl chr 1:10,033,084...10,178,759 		JBrowse link
G UBR1 ubiquitin protein ligase E3 component n-recognin 1 involved_in ISO (PMID:15548684) UniProt PMID:15548684 NCBI chr15:21,899,611...22,064,606
Ensembl chr15:40,060,111...40,221,725 		JBrowse link
G UBR2 ubiquitin protein ligase E3 component n-recognin 2 involved_in ISO (PMID:15548684) UniProt PMID:15548684 NCBI chr 6:42,150,409...42,282,486
Ensembl chr 6:43,449,154...43,579,224 		JBrowse link
G UBR4 ubiquitin protein ligase E3 component n-recognin 4 involved_in ISO (PMID:37891180), (PMID:38297121) UniProt PMID:37891180 PMID:38297121 NCBI chr 1:18,032,528...18,168,954
Ensembl chr 1:19,079,779...19,215,578 		JBrowse link
G UBR5 ubiquitin protein ligase E3 component n-recognin 5 involved_in ISO (PMID:29378950) UniProt PMID:29378950 NCBI chr 8:98,904,557...99,064,121
Ensembl chr 8:101,067,435...101,224,913 		JBrowse link
G UBXN11 UBX domain protein 11 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:25,543,314...25,567,655
Ensembl chr 1:26,608,439...26,636,016 		JBrowse link
G UBXN2A UBX domain protein 2A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr2A:23,928,207...24,003,550
Ensembl chr2A:24,038,567...24,097,309 		JBrowse link
G UBXN2B UBX domain protein 2B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:54,865,251...54,905,243
Ensembl chr 8:56,516,601...56,556,489 		JBrowse link
G UBXN7 UBX domain protein 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:193,699,924...193,778,452
Ensembl chr 3:203,643,126...203,719,317 		JBrowse link
G USP14 ubiquitin specific peptidase 14 involved_in IEA InterPro GO_REF:0000002 NCBI chr18:14,104,754...14,158,402
Ensembl chr18:17,745,733...17,797,070 		JBrowse link
G USP25 ubiquitin specific peptidase 25 involved_in IEA InterPro GO_REF:0000002 NCBI chr21:2,468,993...2,618,200
Ensembl chr21:15,724,729...15,982,182 		JBrowse link
G USP44 ubiquitin specific peptidase 44 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:93,111,293...93,146,889
Ensembl chr12:96,503,794...96,536,094 		JBrowse link
G VCP valosin containing protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:34,907,147...34,923,227
Ensembl chr 9:35,712,937...35,729,588 		JBrowse link
G VHL von Hippel-Lindau tumor suppressor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:10,077,630...10,089,499
Ensembl chr 3:10,430,143...10,440,234 		JBrowse link
G WDR26 WD repeat domain 26 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:199,853,860...199,903,474
Ensembl chr 1:204,861,784...204,914,538 		JBrowse link
G WWP1 WW domain containing E3 ubiquitin protein ligase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:83,039,632...83,165,010
Ensembl chr 8:85,009,951...85,134,671 		JBrowse link
G WWP2 WW domain containing E3 ubiquitin protein ligase 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:50,142,402...50,322,052
Ensembl chr16:69,525,246...69,703,831 		JBrowse link
G ZFAND2A zinc finger AN1-type containing 2A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:1,392,979...1,401,283
Ensembl chr 7:1,518,912...1,526,107 		JBrowse link
G ZFAND2B zinc finger AN1-type containing 2B involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr2B:106,464,364...106,467,217
Ensembl chr2B:225,055,969...225,058,647 		JBrowse link
G ZNRF1 zinc and ring finger 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:55,567,875...55,679,524
Ensembl chr16:74,920,141...75,030,933 		JBrowse link
G ZNRF4 zinc and ring finger 4 involved_in ISO (PMID:28656966) UniProt PMID:28656966 NCBI chr19:4,474,001...4,475,435 JBrowse link
G ZSWIM8 zinc finger SWIM-type containing 8 involved_in ISO (PMID:33184234) UniProt PMID:33184234 NCBI chr10:70,308,480...70,324,729
Ensembl chr10:72,981,196...72,997,070 		JBrowse link
protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PTPN23 protein tyrosine phosphatase non-receptor type 23 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:47,280,706...47,314,268
Ensembl chr 3:48,379,810...48,413,488 		JBrowse link
G SH3D19 SH3 domain containing 19 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:143,460,618...143,664,796
Ensembl chr 4:155,115,280...155,217,392 		JBrowse link
G SNF8 SNF8 subunit of ESCRT-II involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:8,595,647...8,609,730
Ensembl chr17:8,578,050...8,794,480 		JBrowse link
G SPRYD3 SPRY domain containing 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:35,677,077...35,691,926
Ensembl chr12:36,458,094...36,473,169 		JBrowse link
G STAM signal transducing adaptor molecule involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:17,962,759...18,035,654
Ensembl chr10:18,232,548...18,305,197 		JBrowse link
G VPS25 vacuolar protein sorting 25 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:14,538,322...14,544,573
Ensembl chr17:14,763,523...14,769,672 		JBrowse link
G VPS28 VPS28 subunit of ESCRT-I involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:141,189,967...141,195,482
Ensembl chr 8:144,180,081...144,185,175 		JBrowse link
G VPS36 vacuolar protein sorting 36 homolog involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chr13:33,398,165...33,436,615
Ensembl chr13:52,336,484...52,372,851 		JBrowse link
regulation of proteasomal ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARAF A-Raf proto-oncogene, serine/threonine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:39,997,026...40,007,783
Ensembl chr  X:47,893,153...47,904,643 		JBrowse link
G COMMD1 copper metabolism domain containing 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr2A:61,970,830...62,216,677
Ensembl chr2A:63,121,521...63,349,131 		JBrowse link
G DDA1 DET1 and DDB1 associated 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr19:16,797,750...16,808,427
Ensembl chr19:17,771,925...17,785,267 		JBrowse link
G DESI1 desumoylating isopeptidase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:22,493,114...22,516,191
Ensembl chr22:40,578,968...40,602,094 		JBrowse link
G FOXF2 forkhead box F2 involved_in ISO (PMID:29374064) UniProt PMID:29374064 NCBI chr 6:1,209,899...1,215,970 JBrowse link
G GLMN glomulin, FKBP associated protein acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:22405651) MGI
Ensembl		 PMID:22405651 GO_REF:0000107 NCBI chr 1:94,907,342...94,963,052
Ensembl chr 1:93,646,499...93,701,430 		JBrowse link
G GNA12 G protein subunit alpha 12 involved_in ISO (PMID:22609986)
(MGI:5448916|PMID:22609986)		 UniProt PMID:22609986 MGI:5448916 NCBI chr 7:2,989,832...3,104,848 JBrowse link
G RAD23A RAD23 homolog A, nucleotide excision repair protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:12,508,232...12,516,068
Ensembl chr19:13,250,718...13,258,482 		JBrowse link
G RAD23B RAD23 homolog B, nucleotide excision repair protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:78,433,461...78,482,157
Ensembl chr 9:106,622,377...106,670,317 		JBrowse link
G UBE2K ubiquitin conjugating enzyme E2 K involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18710920) Ensembl
MGI		 PMID:18710920 GO_REF:0000107 NCBI chr 4:34,026,942...34,111,923
Ensembl chr 4:39,877,966...39,960,397 		JBrowse link
G UBQLN4 ubiquilin 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:131,374,635...131,395,986
Ensembl chr 1:135,209,490...135,225,666 		JBrowse link
G UFL1 UFM1 specific ligase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:20228063) MGI
TreeGrafter
Ensembl		 PMID:20228063 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:94,356,440...94,389,920
Ensembl chr 6:98,242,756...98,274,377 		JBrowse link
G WNT10B Wnt family member 10B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19056892) Ensembl
MGI		 PMID:19056892 GO_REF:0000107 NCBI chr12:39,771,163...39,785,411
Ensembl chr12:40,659,106...40,665,734 		JBrowse link
G XPO1 exportin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:61,562,372...61,622,841
Ensembl chr2A:62,698,935...62,757,793 		JBrowse link
G ZNF416 zinc finger protein 416 involved_in ISO PMID:33249983
(MGI:6789914|PMID:33249983)		 UniProt PMID:33249983 MGI:6789914 RGD:329955556 NCBI chr19:54,583,428...54,590,792
Ensembl chr19:63,412,869...63,420,231 		JBrowse link
regulation of ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G L3MBTL3 L3MBTL histone methyl-lysine binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:127,814,847...127,938,220
Ensembl chr 6:131,922,967...132,045,708 		JBrowse link
G LOC100991443 katanin p60 ATPase-containing subunit A1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:147,413,892...147,467,587
Ensembl chr 6:152,119,206...152,173,113
Ensembl chr 6:152,119,206...152,173,113 		JBrowse link
G NUB1 negative regulator of ubiquitin like proteins 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:142,927,730...142,964,475
Ensembl chr 7:155,079,243...155,114,676 		JBrowse link
G PTK2B protein tyrosine kinase 2 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:26,580,855...26,729,378
Ensembl chr 8:23,869,825...23,932,474 		JBrowse link
G TMEM168 transmembrane protein 168 acts_upstream_of_or_within ISO (PMID:32175648) MGI PMID:32175648 NCBI chr 7:104,729,362...104,756,299
Ensembl chr 7:117,433,384...117,458,000 		JBrowse link
G UBE3A ubiquitin protein ligase E3A involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:4,494,029...4,595,415
Ensembl chr15:22,747,075...22,825,459 		JBrowse link
ribosome-associated ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASCC2 activating signal cointegrator 1 complex subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:10,832,102...10,881,987
Ensembl chr22:28,637,041...28,686,003 		JBrowse link
G ASCC3 activating signal cointegrator 1 complex subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:98,345,023...98,720,332
Ensembl chr 6:102,224,820...102,599,521 		JBrowse link
G LTN1 listerin E3 ubiquitin protein ligase 1 involved_in IEA InterPro
TreeGrafter
UniProt
Ensembl		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr21:15,359,090...15,424,126
Ensembl chr21:28,749,584...28,812,734 		JBrowse link
G NEMF nuclear export mediator factor involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr14:30,372,390...30,441,660
Ensembl chr14:48,679,252...48,748,258 		JBrowse link
G RNF10 ring finger protein 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:118,117,486...118,160,341
Ensembl chr12:121,492,170...121,532,623 		JBrowse link
G TCF25 transcription factor 25 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:70,636,413...70,675,841
Ensembl chr16:90,298,175...90,340,048 		JBrowse link
G TRIP4 thyroid hormone receptor interactor 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:43,332,107...43,400,522
Ensembl chr15:61,623,584...61,692,963 		JBrowse link
G ZNF598 zinc finger protein 598, E3 ubiquitin ligase involved_in ISO (PMID:32099016) UniProt PMID:32099016 NCBI chr16:694,562...706,711
Ensembl chr16:2,086,844...2,092,277 		JBrowse link
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BTRC beta-transducin repeat containing E3 ubiquitin protein ligase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:32558204) Ensembl
MGI		 PMID:32558204 GO_REF:0000107 NCBI chr10:97,958,527...98,159,550
Ensembl chr10:101,431,318...101,632,496 		JBrowse link
G CCNF cyclin F involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:1,285,379...1,314,972
Ensembl chr16:2,529,371...2,556,438 		JBrowse link
G CUL1 cullin 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:140,428,442...140,531,136
Ensembl chr 7:152,908,303...153,011,254 		JBrowse link
G CUL2 cullin 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:35,127,771...35,210,108
Ensembl chr10:35,704,964...35,787,014 		JBrowse link
G CUL5 cullin 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:102,895,611...102,994,447
Ensembl chr11:106,371,759...106,469,989 		JBrowse link
G FBXL12 F-box and leucine rich repeat protein 12 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:9,362,764...9,371,547
Ensembl chr19:10,027,266...10,036,091 		JBrowse link
G FBXL13 F-box and leucine rich repeat protein 13 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:94,783,166...95,049,017
Ensembl chr 7:107,635,624...107,898,958 		JBrowse link
G FBXL14 F-box and leucine rich repeat protein 14 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:1,674,046...1,703,414
Ensembl chr12:1,626,802...1,655,056 		JBrowse link
G FBXL15 F-box and leucine rich repeat protein 15 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr10:99,022,732...99,026,623
Ensembl chr10:102,485,732...102,492,301 		JBrowse link
G FBXL17 F-box and leucine rich repeat protein 17 involved_in ISO (PMID:24035498), (PMID:27234298) UniProt PMID:24035498 PMID:27234298 NCBI chr 5:103,214,110...103,739,494 JBrowse link
G FBXL18 F-box and leucine rich repeat protein 18 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 7:5,734,703...5,770,942
Ensembl chr 7:5,751,134...5,789,134 		JBrowse link
G FBXL2 F-box and leucine rich repeat protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:33,199,436...33,308,831
Ensembl chr 3:33,501,525...33,610,039 		JBrowse link
G FBXL20 F-box and leucine rich repeat protein 20 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:17,885,351...18,018,891
Ensembl chr17:18,098,172...18,285,524 		JBrowse link
G FBXL3 F-box and leucine rich repeat protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:58,219,260...58,244,780
Ensembl chr13:77,266,496...77,283,651 		JBrowse link
G FBXL4 F-box and leucine rich repeat protein 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:96,717,103...96,790,932
Ensembl chr 6:100,599,390...100,661,249 		JBrowse link
G FBXL5 F-box and leucine rich repeat protein 5 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:10,050,909...10,107,573
Ensembl chr 4:15,348,977...15,430,631 		JBrowse link
G FBXL7 F-box and leucine rich repeat protein 7 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:15,804,479...16,237,326
Ensembl chr 5:15,643,846...16,075,623 		JBrowse link
G FBXL8 F-box and leucine rich repeat protein 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:47,505,627...47,510,190
Ensembl chr16:66,896,147...66,898,044 		JBrowse link
G FBXO17 F-box protein 17 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:36,041,892...36,075,757
Ensembl chr19:44,590,799...44,624,871 		JBrowse link
G FBXO2 F-box protein 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:10,408,853...10,415,174
Ensembl chr 1:11,626,713...11,633,171 		JBrowse link
G FBXO27 F-box protein 27 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:36,113,773...36,133,009
Ensembl chr19:44,675,354...44,681,541 		JBrowse link
G FBXO3 F-box protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:33,713,147...33,746,730
Ensembl chr11:33,594,854...33,628,399 		JBrowse link
G FBXO31 F-box protein 31 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:67,997,481...68,053,081
Ensembl chr16:87,322,364...87,377,104 		JBrowse link
G FBXO36 F-box protein 36 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr2B:117,174,590...117,263,324
Ensembl chr2B:235,978,710...236,066,904 		JBrowse link
G FBXO38 F-box protein 38 involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:143,814,446...143,873,919
Ensembl chr 5:149,834,109...149,881,903 		JBrowse link
G FBXO4 F-box protein 4 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:68,336,673...68,474,481
Ensembl chr 5:73,500,850...73,517,051 		JBrowse link
G FBXO44 F-box protein 44 involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr 1:11,632,768...11,640,846 JBrowse link
G FBXO48 F-box protein 48 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr2A:68,504,304...68,509,113
Ensembl chr2A:69,627,187...69,632,218 		JBrowse link
G FBXO6 F-box protein 6 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:10,414,856...10,436,406
Ensembl chr 1:11,643,009...11,654,837
Ensembl chr 1:11,643,009...11,654,837
Ensembl chr 1:11,643,009...11,654,837 		JBrowse link
G FBXO9 F-box protein 9 involved_in IEA InterPro
TreeGrafter
UniProt
Ensembl		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:52,621,036...52,652,980
Ensembl chr 6:54,259,044...54,291,207 		JBrowse link
G FBXW11 F-box and WD repeat domain containing 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:167,207,643...167,354,730
Ensembl chr 5:174,124,499...174,271,977 		JBrowse link
G FBXW4 F-box and WD repeat domain containing 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:98,212,907...98,297,477
Ensembl chr10:101,685,804...101,769,672 		JBrowse link
G FBXW5 F-box and WD repeat domain containing 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:107,998,949...108,003,247
Ensembl chr 9:136,969,957...136,973,945 		JBrowse link
G FBXW7 F-box and WD repeat domain containing 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:144,660,676...144,874,404
Ensembl chr 4:156,312,274...156,402,351 		JBrowse link
G KIF14 kinesin family member 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:176,156,870...176,223,093
Ensembl chr 1:180,462,578...180,526,323 		JBrowse link
G NCCRP1 NCCRP1, F-box associated domain containing involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:36,295,765...36,300,893
Ensembl chr19:44,844,711...44,848,796 		JBrowse link
G RBX1 ring-box 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:21,845,351...21,866,627
Ensembl chr22:39,941,405...39,962,175 		JBrowse link
G SKP1 S-phase kinase associated protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:129,560,086...129,580,188
Ensembl chr 5:135,713,085...135,729,653 		JBrowse link
G SKP2 S-phase kinase associated protein 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:74,179,608...74,211,563
Ensembl chr 5:79,461,018...79,492,311 		JBrowse link
G WWTR1 WW domain containing transcription regulator 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17636028) Ensembl
MGI		 PMID:17636028 GO_REF:0000107 NCBI chr 3:146,536,564...146,678,847
Ensembl chr 3:154,114,034...154,254,490 		JBrowse link
ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMFR autocrine motility factor receptor involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:36,647,792...36,711,782
Ensembl chr16:55,780,633...55,843,744 		JBrowse link
G ANAPC11 anaphase promoting complex subunit 11 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:76,297,262...76,305,826
Ensembl chr17:82,002,135...82,007,921 		JBrowse link
G ANAPC2 anaphase promoting complex subunit 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr 9:108,234,949...108,248,227
Ensembl chr 9:137,204,356...137,217,652 		JBrowse link
G ANKIB1 ankyrin repeat and IBR domain containing 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:84,243,929...84,399,358
Ensembl chr 7:97,841,233...97,995,816 		JBrowse link
G AREL1 apoptosis resistant E3 ubiquitin protein ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:55,213,600...55,265,198
Ensembl chr14:74,060,653...74,112,165 		JBrowse link
G ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10431818) Ensembl
MGI
TreeGrafter		 PMID:10431818 GO_REF:0000107 GO_REF:0000118 NCBI chr15:51,423,132...51,534,278
Ensembl chr15:70,187,722...70,297,226 		JBrowse link
G ARIH2 ariadne RBR E3 ubiquitin protein ligase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10431818) Ensembl
MGI
TreeGrafter		 PMID:10431818 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:48,844,161...48,910,183
Ensembl chr 3:49,926,453...49,991,924 		JBrowse link
G ARK2N arkadia (RNF111) N-terminal like PKA signaling regulator 2N involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr18:39,455,256...39,548,926
Ensembl chr18:42,990,152...43,082,789 		JBrowse link
G ARRB1 arrestin beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:70,319,935...70,411,276
Ensembl chr11:73,630,276...73,654,155 		JBrowse link
G ARRDC1 arrestin domain containing 1 NOT|involved_in ISO
IEA		 (PMID:27462458) UniProt
Ensembl		 PMID:27462458 GO_REF:0000107 NCBI chr 9:108,711,276...108,720,942
Ensembl chr 9:137,664,787...137,668,688 		JBrowse link
G ARRDC4 arrestin domain containing 4 NOT|involved_in ISO (MGI:5804712|PMID:27462458) UniProt PMID:27462458 MGI:5804712 NCBI chr15:76,643,796...76,657,525
Ensembl chr15:95,830,793...95,843,939 		JBrowse link
G ASB2 ankyrin repeat and SOCS box containing 2 involved_in ISO (PMID:24044920)
(MGI:6102779|PMID:26343497)		 UniProt PMID:24044920 PMID:26343497 MGI:6102779 NCBI chr14:74,566,607...74,608,905
Ensembl chr14:93,900,914...93,930,527 		JBrowse link
G ATE1 arginyltransferase 1 involved_in ISO (PMID:34893540) UniProt PMID:34893540 NCBI chr10:118,316,655...118,504,409
Ensembl chr10:121,730,231...121,917,346 		JBrowse link
G ATXN3 ataxin 3 acts_upstream_of_or_within ISO (PMID:17764659) MGI PMID:17764659 NCBI chr14:72,693,446...72,741,772 JBrowse link
G BAG6 BAG cochaperone 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:31,300,126...31,313,829
Ensembl chr 6:32,190,037...32,204,321 		JBrowse link
G BAP1 BRCA1 associated protein 1 involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chr 3:52,344,067...52,352,187
Ensembl chr 3:53,573,785...53,581,943 		JBrowse link
G BFAR bifunctional apoptosis regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:13,558,912...13,597,023
Ensembl chr16:14,980,615...15,018,310 		JBrowse link
G BTRC beta-transducin repeat containing E3 ubiquitin protein ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:97,958,527...98,159,550
Ensembl chr10:101,431,318...101,632,496 		JBrowse link
G CBL Cbl proto-oncogene involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:114,044,996...114,149,204
Ensembl chr11:117,973,187...118,074,671 		JBrowse link
G CBLC Cbl proto-oncogene C involved_in ISO (PMID:14661060) BHF-UCL PMID:14661060 NCBI chr19:41,726,272...41,748,829 JBrowse link
G CDC34 cell division cycle 34, ubiqiutin conjugating enzyme involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:592,856...602,811
Ensembl chr19:502,766...512,173 		JBrowse link
G CENPC centromere protein C involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:56,348,370...56,433,433
Ensembl chr 4:62,741,812...62,826,197
Ensembl chr 4:62,741,812...62,826,197 		JBrowse link
G CHFR checkpoint with forkhead and ring finger domains involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15793587) Ensembl
MGI
TreeGrafter		 PMID:15793587 GO_REF:0000107 GO_REF:0000118 NCBI chr12:130,318,971...130,366,282
Ensembl chr12:134,923,458...134,968,832
Ensembl chr12:134,923,458...134,968,832 		JBrowse link
G CNOT4 CCR4-NOT transcription complex subunit 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:127,327,092...127,475,213
Ensembl chr 7:139,828,828...139,905,285 		JBrowse link
G COPS3 COP9 signalosome subunit 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:34,013,180...34,047,546
Ensembl chr17:38,944,618...38,978,235 		JBrowse link
G CUL1 cullin 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 7:140,428,442...140,531,136
Ensembl chr 7:152,908,303...153,011,254 		JBrowse link
G CUL2 cullin 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr10:35,127,771...35,210,108
Ensembl chr10:35,704,964...35,787,014 		JBrowse link
G CUL3 cullin 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25401743) MGI
InterPro
Ensembl		 PMID:25401743 GO_REF:0000002 GO_REF:0000107 NCBI chr2B:111,714,533...111,827,080
Ensembl chr2B:230,289,195...230,378,991 		JBrowse link
G CUL4A cullin 4A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19481525) Ensembl
MGI
InterPro		 PMID:19481525 GO_REF:0000002 GO_REF:0000107 NCBI chr13:94,350,484...94,409,183
Ensembl chr13:113,428,271...113,472,701 		JBrowse link
G CUL4B cullin 4B involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr  X:109,798,279...109,870,469
Ensembl chr  X:119,985,116...120,034,702 		JBrowse link
G CUL5 cullin 5 involved_in IEA InterPro GO_REF:0000002 NCBI chr11:102,895,611...102,994,447
Ensembl chr11:106,371,759...106,469,989 		JBrowse link
G CUL7 cullin 7 involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:42,629,158...42,646,279
Ensembl chr 6:43,924,408...43,942,768 		JBrowse link
G CUL9 cullin 9 involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:42,773,955...42,816,361
Ensembl chr 6:44,067,389...44,110,122 		JBrowse link
G DCST1 DC-STAMP domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:130,381,851...130,398,975
Ensembl chr 1:133,991,485...134,008,614 		JBrowse link
G DDB1 damage specific DNA binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:56,599,422...56,633,140
Ensembl chr11:59,964,235...59,997,805 		JBrowse link
G DISC1 DISC1 scaffold protein involved_in
acts_upstream_of		 IEA
ISO		 (PMID:20880836) Ensembl
MGI		 PMID:20880836 GO_REF:0000107 NCBI chr 1:207,180,513...207,594,684
Ensembl chr 1:212,265,520...212,612,079 		JBrowse link
G DTL denticleless E3 ubiquitin protein ligase homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:187,603,600...187,672,006
Ensembl chr 1:192,466,408...192,535,071 		JBrowse link
G DTX3L deltex E3 ubiquitin ligase 3L involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:119,654,019...119,664,918
Ensembl chr 3:126,558,924...126,569,807 		JBrowse link
G EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:5,133,927...5,162,485
Ensembl chr 3:5,234,123...5,262,003 		JBrowse link
G ELOC elongin C involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 8:70,479,805...70,506,142
Ensembl chr 8:72,121,035...72,151,085 		JBrowse link
G EPG5 ectopic P-granules 5 autophagy tethering factor acts_upstream_of_or_within ISO (PMID:31628468) MGI PMID:31628468 NCBI chr18:39,129,678...39,250,418
Ensembl chr18:42,669,223...42,788,788 		JBrowse link
G FBXL12 F-box and leucine rich repeat protein 12 acts_upstream_of_or_within ISO (PMID:10531037) MGI PMID:10531037 NCBI chr19:9,362,764...9,371,547
Ensembl chr19:10,027,266...10,036,091 		JBrowse link
G FBXL14 F-box and leucine rich repeat protein 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:1,674,046...1,703,414
Ensembl chr12:1,626,802...1,655,056 		JBrowse link
G FBXL2 F-box and leucine rich repeat protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21343341) Ensembl
MGI		 PMID:21343341 GO_REF:0000107 NCBI chr 3:33,199,436...33,308,831
Ensembl chr 3:33,501,525...33,610,039 		JBrowse link
G FBXO10 F-box protein 10 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:37,355,861...37,421,321
Ensembl chr 9:38,279,653...38,345,040 		JBrowse link
G FBXO11 F-box protein 11 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr2A:47,926,629...48,026,245
Ensembl chr2A:48,830,780...48,886,300 		JBrowse link
G FBXO2 F-box protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15723043) Ensembl
MGI		 PMID:15723043 GO_REF:0000107 NCBI chr 1:10,408,853...10,415,174
Ensembl chr 1:11,626,713...11,633,171 		JBrowse link
G FBXO22 F-box protein 22 acts_upstream_of ISO (PMID:19319192) MGI PMID:19319192 NCBI chr15:54,817,076...54,849,271
Ensembl chr15:74,410,213...74,441,609 		JBrowse link
G FBXO4 F-box protein 4 involved_in ISO (PMID:16275645) UniProt PMID:16275645 NCBI chr 5:68,336,673...68,474,481
Ensembl chr 5:73,500,850...73,517,051 		JBrowse link
G FBXO45 F-box protein 45 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:193,913,712...193,934,123
Ensembl chr 3:203,856,374...203,876,537 		JBrowse link
G FBXO6 F-box protein 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:10,414,856...10,436,406
Ensembl chr 1:11,643,009...11,654,837
Ensembl chr 1:11,643,009...11,654,837
Ensembl chr 1:11,643,009...11,654,837 		JBrowse link
G FBXO7 F-box protein 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:13,481,255...13,505,301
Ensembl chr22:31,335,423...31,359,224 		JBrowse link
G FBXO8 F-box protein 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10531037) Ensembl
MGI		 PMID:10531037 GO_REF:0000107 NCBI chr 4:166,462,626...166,509,875
Ensembl chr 4:178,696,995...178,744,895 		JBrowse link
G GET4 guided entry of tail-anchored proteins factor 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:1,032,739...1,053,062
Ensembl chr 7:1,255,130...1,267,800 		JBrowse link
G HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:102,541,992...102,674,281
Ensembl chr 6:106,419,867...106,551,007 		JBrowse link
G HDAC6 histone deacetylase 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16810319) Ensembl
MGI		 PMID:16810319 GO_REF:0000107 NCBI chr  X:41,099,539...41,122,650
Ensembl chr  X:48,960,430...48,982,642 		JBrowse link
G HECTD1 HECT domain E3 ubiquitin protein ligase 1 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr14:11,871,973...11,979,548
Ensembl chr14:30,070,567...30,176,915 		JBrowse link
G HECTD2 HECT domain E3 ubiquitin protein ligase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:88,157,986...88,262,844
Ensembl chr10:91,698,881...91,785,803 		JBrowse link
G HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:64,405,164...64,559,651
Ensembl chr10:66,716,761...66,870,774 		JBrowse link
G HERC6 HECT and RLD domain containing E3 ubiquitin protein ligase family member 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:80,669,642...80,733,409
Ensembl chr 4:91,393,415...91,455,756 		JBrowse link
G HERPUD1 homocysteine inducible ER protein with ubiquitin like domain 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21600962) Ensembl
MGI
TreeGrafter		 PMID:21600962 GO_REF:0000107 GO_REF:0000118 NCBI chr16:37,210,170...37,221,961
Ensembl chr16:56,343,025...56,355,164 		JBrowse link
G ISG15 ISG15 ubiquitin like modifier involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr 1:927,418...928,491 JBrowse link
G ITCH itchy E3 ubiquitin protein ligase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15678106)
(PMID:14973438), (PMID:15678106)		 MGI
Ensembl
InterPro		 PMID:14973438 PMID:15678106 GO_REF:0000002 GO_REF:0000107 NCBI chr20:30,690,172...30,840,504
Ensembl chr20:31,852,203...31,971,945 		JBrowse link
G KCTD10 potassium channel tetramerization domain containing 10 acts_upstream_of_or_within ISO (PMID:25401743) MGI PMID:25401743 NCBI chr12:107,025,380...107,054,118
Ensembl chr12:110,419,859...110,448,773 		JBrowse link
G KCTD19 potassium channel tetramerization domain containing 19 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:47,634,636...47,671,934
Ensembl chr16:67,023,847...67,061,230 		JBrowse link
G KCTD21 potassium channel tetramerization domain containing 21 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr11:73,231,381...73,248,796
Ensembl chr11:76,855,648...76,856,430 		JBrowse link
G KCTD6 potassium channel tetramerization domain containing 6 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:58,365,847...58,439,763
Ensembl chr 3:59,840,170...59,850,009 		JBrowse link
G KEAP1 kelch like ECH associated protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:10,037,544...10,055,091
Ensembl chr19:10,701,303...10,717,604 		JBrowse link
G KLF1 KLF transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:12,446,130...12,449,238
Ensembl chr19:13,188,652...13,191,425 		JBrowse link
G KLHL15 kelch like family member 15 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:16,583,117...16,625,029
Ensembl chr  X:23,956,827...23,997,742 		JBrowse link
G KLHL22 kelch like family member 22 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr22:19,122,875...19,174,842 JBrowse link
G KLHL25 kelch like family member 25 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:64,448,130...64,486,254
Ensembl chr15:83,670,090...83,671,859 		JBrowse link
G KLHL3 kelch like family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:133,005,563...133,276,087
Ensembl chr 5:139,147,793...139,248,919 		JBrowse link
G KLHL8 kelch like family member 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:79,462,540...79,522,547
Ensembl chr 4:90,190,302...90,225,284 		JBrowse link
G LNX1 ligand of numb-protein X 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11782429) Ensembl
MGI
TreeGrafter		 PMID:11782429 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:70,374,106...70,497,058
Ensembl chr 4:76,911,082...77,050,270 		JBrowse link
G LOC100970299 ubiquitin recognition factor in ER-associated degradation protein 1-like involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr18:20,088,370...20,089,577 JBrowse link
G LOC100979877 E3 ubiquitin-protein ligase TTC3-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:64,987,917...64,994,637 JBrowse link
G LOC100987164 elongin-C-like involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr15:20,497,608...20,498,275 JBrowse link
G LOC100987891 ubiquitin-conjugating enzyme E2 L3-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:35,815,637...35,816,348 JBrowse link
G LOC117981544 ubiquitin-conjugating enzyme E2 R2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:121,155,759...121,157,375 JBrowse link
G LOC129392906 E3 ubiquitin-protein ligase TRIM58 involved_in ISO (MGI:5908531|PMID:25241935) UniProt PMID:25241935 MGI:5908531
G MAP3K1 mitogen-activated protein kinase kinase kinase 1 ISO RGD PMID:12049732 RGD:729224 NCBI chr 5:57,116,405...57,197,017
Ensembl chr 5:58,745,579...58,826,959 		JBrowse link
G MDM2 MDM2 proto-oncogene acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:24506068)
(PMID:12145204), (PMID:17591690)		 MGI
Ensembl		 PMID:12145204 PMID:17591690 PMID:24506068 GO_REF:0000107 NCBI chr12:66,322,340...66,357,010
Ensembl chr12:69,102,084...69,133,278 		JBrowse link
G MIB1 MIB E3 ubiquitin protein ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:14,944,432...15,113,313
Ensembl chr18:18,641,135...18,740,813 		JBrowse link
G MKRN2 makorin ring finger protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:12,481,268...12,510,196
Ensembl chr 3:12,824,341...12,853,520 		JBrowse link
G MYLIP myosin regulatory light chain interacting protein involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:15,985,844...16,005,043
Ensembl chr 6:16,350,852...16,370,253 		JBrowse link
G NDFIP1 Nedd4 family interacting protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:137,467,161...137,511,569
Ensembl chr 5:143,600,789...143,622,913 		JBrowse link
G NDFIP2 Nedd4 family interacting protein 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:60,717,590...60,792,373
Ensembl chr13:79,745,362...79,820,286 		JBrowse link
G NEDD4 NEDD4 E3 ubiquitin protein ligase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18931680) InterPro
MGI		 PMID:18931680 GO_REF:0000002 NCBI chr15:34,798,880...34,963,823
Ensembl chr15:53,118,411...53,283,076 		JBrowse link
G NEDD4L NEDD4 like E3 ubiquitin protein ligase involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr18:51,428,077...51,792,995
Ensembl chr18:54,867,149...55,123,423 		JBrowse link
G NPLOC4 NPL4 homolog, ubiquitin recognition factor involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr17:76,012,756...76,092,901
Ensembl chr17:81,713,582...81,788,714 		JBrowse link
G NTAN1 N-terminal asparagine amidase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:13,704,891...13,722,531 JBrowse link
G NUB1 negative regulator of ubiquitin like proteins 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:142,927,730...142,964,475
Ensembl chr 7:155,079,243...155,114,676 		JBrowse link
G OS9 OS9 endoplasmic reticulum lectin involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:31,205,239...31,232,769
Ensembl chr12:31,463,716...31,493,076 		JBrowse link
G PPP1R11 protein phosphatase 1 regulatory inhibitor subunit 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:29,844,971...29,851,792
Ensembl chr 6:30,515,139...30,518,384 		JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:159,293,016...160,679,106
Ensembl chr 6:164,314,990...165,678,770 		JBrowse link
G PSMA2 proteasome 20S subunit alpha 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr 7:41,304,746...41,319,844
Ensembl chr 7:41,348,364...41,363,986 		JBrowse link
G PSMA3 proteasome 20S subunit alpha 3 involved_in IEA InterPro GO_REF:0000002 NCBI chr14:38,836,869...38,864,152
Ensembl chr14:57,105,891...57,133,181 		JBrowse link
G PSMA4 proteasome 20S subunit alpha 4 involved_in IEA InterPro GO_REF:0000002 NCBI chr15:57,468,590...57,477,390
Ensembl chr15:76,431,890...76,440,655 		JBrowse link
G PSMA6 proteasome 20S subunit alpha 6 involved_in IEA InterPro GO_REF:0000002 NCBI chr14:16,044,300...16,069,521
Ensembl chr14:34,214,271...34,252,347 		JBrowse link
G PSMA8 proteasome 20S subunit alpha 8 involved_in IEA InterPro GO_REF:0000002 NCBI chr18:19,391,216...19,447,259
Ensembl chr18:23,000,562...23,057,399 		JBrowse link
G PSMC2 proteasome 26S subunit, ATPase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:95,338,743...95,359,353
Ensembl chr 7:108,083,203...108,103,494 		JBrowse link
G PSMD11 proteasome 26S subunit, non-ATPase 11 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:24,292,990...24,331,690
Ensembl chr17:24,585,755...24,621,013 		JBrowse link
G PSMD13 proteasome 26S subunit, non-ATPase 13 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:233,691...250,184
Ensembl chr11:275,304...294,685 		JBrowse link
G PSMD3 proteasome 26S subunit, non-ATPase 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:17,291,020...17,308,202
Ensembl chr17:17,511,189...17,528,382 		JBrowse link
G PSMF1 proteasome inhibitor subunit 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:1,275,662...1,325,410
Ensembl chr20:1,043,513...1,092,237 		JBrowse link
G RBBP6 RB binding protein 6, ubiquitin ligase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 Ensembl chr16:24,787,210...24,818,989 JBrowse link
G RBX1 ring-box 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr22:21,845,351...21,866,627
Ensembl chr22:39,941,405...39,962,175 		JBrowse link
G RC3H1 ring finger and CCCH-type domains 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:149,454,748...149,539,566
Ensembl chr 1:153,160,661...153,213,402 		JBrowse link
G RC3H2 ring finger and CCCH-type domains 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:93,975,164...94,031,516
Ensembl chr 9:122,313,791...122,365,102 		JBrowse link
G RCHY1 ring finger and CHY zinc finger domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:48,691,213...48,725,979
Ensembl chr 4:54,526,202...54,561,048 		JBrowse link
G RFFL ring finger and FYVE like domain containing E3 ubiquitin protein ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:21,696,808...21,779,878
Ensembl chr17:22,035,643...22,069,546 		JBrowse link
G RLIM ring finger protein, LIM domain interacting involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr  X:63,834,345...63,865,874
Ensembl chr  X:73,959,365...73,982,412 		JBrowse link
G RNF11 ring finger protein 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11042109) Ensembl
MGI
TreeGrafter		 PMID:11042109 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:50,480,862...50,517,676
Ensembl chr 1:51,980,420...52,016,730 		JBrowse link
G RNF111 ring finger protein 111 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16601693) Ensembl
MGI
TreeGrafter		 PMID:16601693 GO_REF:0000107 GO_REF:0000118 NCBI chr15:37,957,390...38,068,006
Ensembl chr15:56,265,379...56,374,484 		JBrowse link
G RNF114 ring finger protein 114 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:46,276,703...46,293,817
Ensembl chr20:47,338,092...47,356,464 		JBrowse link
G RNF123 ring finger protein 123 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:49,621,909...49,653,668
Ensembl chr 3:50,865,022...50,889,509 		JBrowse link
G RNF125 ring finger protein 125 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr18:25,227,353...25,297,186
Ensembl chr18:28,824,183...28,873,068 		JBrowse link
G RNF126 ring finger protein 126 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:491,699...494,175
Ensembl chr19:614,236...618,659 		JBrowse link
G RNF13 ring finger protein 13 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:146,828,951...146,983,613
Ensembl chr 3:154,408,822...154,563,298 		JBrowse link
G RNF14 ring finger protein 14 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:137,316,493...137,351,061
Ensembl chr 5:143,441,497...143,461,355 		JBrowse link
G RNF144A ring finger protein 144A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr2A:6,925,266...7,082,731
Ensembl chr2A:7,085,369...7,184,838 		JBrowse link
G RNF144B ring finger protein 144B involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:18,124,935...18,316,842
Ensembl chr 6:18,586,953...18,668,674 		JBrowse link
G RNF146 ring finger protein 146 involved_in IEA Ensembl
TreeGrafter
UniProt		 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:125,057,312...125,079,096
Ensembl chr 6:129,190,562...129,191,733 		JBrowse link
G RNF167 ring finger protein 167 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:4,988,275...4,993,423
Ensembl chr17:4,975,849...4,981,335 		JBrowse link
G RNF168 ring finger protein 168 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:193,814,785...193,848,620
Ensembl chr 3:203,756,589...203,790,687 		JBrowse link
G RNF185 ring finger protein 185 involved_in IEA InterPro
TreeGrafter
Ensembl
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr22:12,183,591...12,230,371
Ensembl chr22:30,020,353...30,066,266 		JBrowse link
G RNF19A ring finger protein 19A, RBR E3 ubiquitin protein ligase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:96,897,388...96,950,440
Ensembl chr 8:99,070,813...99,123,495 		JBrowse link
G RNF19B ring finger protein 19B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:32,228,220...32,256,745
Ensembl chr 1:33,414,611...33,441,986 		JBrowse link
G RNF20 ring finger protein 20 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:72,738,132...72,767,868
Ensembl chr 9:100,732,342...100,761,258 		JBrowse link
G RNF213 ring finger protein 213 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:74,688,130...74,823,973
Ensembl chr17:80,421,373...80,556,570 		JBrowse link
G RNF215 ring finger protein 215 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr22:11,414,856...11,423,452 JBrowse link
G RNF217 ring finger protein 217 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:122,747,128...122,875,930
Ensembl chr 6:126,867,604...126,992,867 		JBrowse link
G RNF25 ring finger protein 25 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:105,921,875...105,930,034
Ensembl chr2B:224,517,286...224,525,253 		JBrowse link
G RNF26 ring finger protein 26 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:114,175,586...114,178,379
Ensembl chr11:118,103,505...118,104,806 		JBrowse link
G RNF34 ring finger protein 34 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:118,998,436...119,022,823
Ensembl chr12:122,373,172...122,402,693 		JBrowse link
G RNF40 ring finger protein 40 ISO RGD PMID:12121982 RGD:633892 NCBI chr16:24,194,293...24,207,460
Ensembl chr16:31,129,352...31,142,280 		JBrowse link
G RNF43 ring finger protein 43 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:52,420,516...52,492,813
Ensembl chr17:57,276,761...57,347,748 		JBrowse link
G RNF5 ring finger protein 5 involved_in IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chr 6:31,825,799...31,828,188 JBrowse link
G RNF6 ring finger protein 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16204183) TreeGrafter
MGI		 PMID:16204183 GO_REF:0000118 NCBI chr13:7,505,669...7,515,542
Ensembl chr13:25,854,765...25,864,629 		JBrowse link
G RNF7 ring finger protein 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:138,772,581...138,780,763
Ensembl chr 3:146,369,779...146,377,233 		JBrowse link
G RNF8 ring finger protein 8 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:36,918,705...36,955,380
Ensembl chr 6:38,108,414...38,145,949 		JBrowse link
G RPGR retinitis pigmentosa GTPase regulator involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:30,718,669...30,777,671 JBrowse link
G SIAH1 siah E3 ubiquitin protein ligase 1 involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:23001567) RGD
InterPro
Ensembl
MGI		 PMID:11786535 PMID:23001567 GO_REF:0000002 GO_REF:0000107 RGD:633984 NCBI chr16:28,627,021...28,651,343
Ensembl chr16:47,517,594...47,522,936 		JBrowse link
G SIAH2 siah E3 ubiquitin protein ligase 2 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr 3:147,759,375...147,781,639
Ensembl chr 3:155,332,751...155,354,139 		JBrowse link
G SIAH3 siah E3 ubiquitin protein ligase family member 3 involved_in IEA InterPro GO_REF:0000002 NCBI chr13:27,180,382...27,255,005 JBrowse link
G SKP1 S-phase kinase associated protein 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 5:129,560,086...129,580,188
Ensembl chr 5:135,713,085...135,729,653 		JBrowse link
G SKP2 S-phase kinase associated protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19056892)
(PMID:10790373)		 Ensembl
MGI		 PMID:10790373 PMID:19056892 GO_REF:0000107 NCBI chr 5:74,179,608...74,211,563
Ensembl chr 5:79,461,018...79,492,311 		JBrowse link
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr 7:90,995,923...91,112,240
Ensembl chr 7:104,500,965...104,568,046 		JBrowse link
G SMURF2 SMAD specific E3 ubiquitin protein ligase 2 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr17:58,638,995...58,759,443
Ensembl chr17:63,731,386...63,809,298 		JBrowse link
G SPOP speckle type BTB/POZ protein acts_upstream_of_or_within ISO (PMID:19684112) MGI PMID:19684112 NCBI chr17:43,685,913...43,765,277
Ensembl chr17:48,417,634...48,440,623 		JBrowse link
G SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:8,053,596...8,132,143
Ensembl chr 1:9,349,825...9,363,624 		JBrowse link
G SPSB2 splA/ryanodine receptor domain and SOCS box containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:7,002,783...7,005,365
Ensembl chr12:6,914,159...6,916,554 		JBrowse link
G SPSB4 splA/ryanodine receptor domain and SOCS box containing 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:138,085,136...138,181,747
Ensembl chr 3:145,682,533...145,779,049 		JBrowse link
G STUB1 STIP1 homology and U-box containing protein 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr16:694,414...696,682 JBrowse link
G SYVN1 synoviolin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:60,489,626...60,496,945
Ensembl chr11:63,829,138...63,834,364 		JBrowse link
G TAF1 TATA-box binding protein associated factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:60,630,137...60,729,904
Ensembl chr  X:70,684,217...70,782,323 		JBrowse link
G TMEM129 transmembrane protein 129, E3 ubiquitin ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:1,853,126...1,858,461
Ensembl chr 4:1,767,517...1,772,643 		JBrowse link
G TOLLIP toll interacting protein involved_in IEA TreeGrafter GO_REF:0000118
G TOPORS TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:32,314,850...32,327,067
Ensembl chr 9:33,124,730...33,135,129 		JBrowse link
G TP53INP2 tumor protein p53 inducible nuclear protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24713655) Ensembl
MGI		 PMID:24713655 GO_REF:0000107 NCBI chr20:31,033,855...31,042,976
Ensembl chr20:32,160,155...32,169,227 		JBrowse link
G TRIM25 tripartite motif containing 25 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:50,965,592...50,991,630
Ensembl chr17:55,826,458...55,852,422 		JBrowse link
G TRIM31 tripartite motif containing 31 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:29,880,668...29,890,905
Ensembl chr 6:30,550,802...30,560,977 		JBrowse link
G TRIM32 tripartite motif containing 32 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:87,819,723...87,838,684
Ensembl chr 9:116,183,746...116,185,707 		JBrowse link
G TRIP12 thyroid hormone receptor interactor 12 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr2B:117,013,343...117,175,296
Ensembl chr2B:235,820,182...235,979,780 		JBrowse link
G TRPC4AP transient receptor potential cation channel subfamily C member 4 associated protein involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr20:31,330,860...31,420,662
Ensembl chr20:32,455,536...32,545,780 		JBrowse link
G TTC3 tetratricopeptide repeat domain 3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr21:23,435,041...23,564,416
Ensembl chr21:36,803,826...36,917,527 		JBrowse link
G UBA1 ubiquitin like modifier activating enzyme 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:39,627,753...39,652,023
Ensembl chr  X:47,493,331...47,509,654 		JBrowse link
G UBD ubiquitin D involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:29,359,680...29,364,014
Ensembl chr 6:30,018,444...30,022,814 		JBrowse link
G UBE2A ubiquitin conjugating enzyme E2 A involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:108,606,271...108,617,000
Ensembl chr  X:119,034,235...119,049,655 		JBrowse link
G UBE2B ubiquitin conjugating enzyme E2 B involved_in ISO
IEA		 RGD
Ensembl		 PMID:8048511 GO_REF:0000107 RGD:1299378 NCBI chr 5:129,775,011...129,794,853
Ensembl chr 5:135,925,217...135,944,609 		JBrowse link
G UBE2C ubiquitin conjugating enzyme E2 C involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:42,152,219...42,156,246
Ensembl chr20:43,239,382...43,243,464 		JBrowse link
G UBE2D1 ubiquitin conjugating enzyme E2 D1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:54,867,346...54,903,125
Ensembl chr10:57,087,811...57,123,581 		JBrowse link
G UBE2D3 ubiquitin conjugating enzyme E2 D3 ISO RGD PMID:7826319 RGD:730002 NCBI chr 4:95,218,319...95,293,053
Ensembl chr 4:105,883,133...105,900,546 		JBrowse link
G UBE2G1 ubiquitin conjugating enzyme E2 G1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:4,321,294...4,416,936
Ensembl chr17:4,312,625...4,351,697 		JBrowse link
G UBE2H ubiquitin conjugating enzyme E2 H involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:121,796,629...121,917,981
Ensembl chr 7:134,318,166...134,437,295 		JBrowse link
G UBE2J2 ubiquitin conjugating enzyme E2 J2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:8,756...28,672
Ensembl chr 1:1,211,502...1,231,530 		JBrowse link
G UBE2L3 ubiquitin conjugating enzyme E2 L3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23499007) TreeGrafter
MGI		 PMID:23499007 GO_REF:0000118 NCBI chr22:3,690,100...3,746,665
Ensembl chr22:20,174,546...20,229,928 		JBrowse link
G UBE2L5 ubiquitin conjugating enzyme E2 L5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:11,700,359...11,711,377
Ensembl chr13:30,142,408...30,142,872 		JBrowse link
G UBE2N ubiquitin conjugating enzyme E2 N acts_upstream_of_or_within ISO (PMID:12039045) MGI PMID:12039045 NCBI chr12:90,951,446...90,984,075 JBrowse link
G UBE2R2 ubiquitin conjugating enzyme E2 R2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:33,655,690...33,758,587 JBrowse link
G UBE2Z ubiquitin conjugating enzyme E2 Z acts_upstream_of_or_within ISO (PMID:23499007) MGI PMID:23499007 NCBI chr17:8,611,033...8,631,716 JBrowse link
G UBE3A ubiquitin protein ligase E3A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16254014) InterPro
MGI
TreeGrafter		 PMID:16254014 GO_REF:0000002 GO_REF:0000118 NCBI chr15:4,494,029...4,595,415
Ensembl chr15:22,747,075...22,825,459 		JBrowse link
G UBE3B ubiquitin protein ligase E3B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:107,054,219...107,113,444
Ensembl chr12:110,455,011...110,506,216 		JBrowse link
G UBE3C ubiquitin protein ligase E3C involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:148,756,024...148,886,688
Ensembl chr 7:160,474,767...160,580,046 		JBrowse link
G UBE4A ubiquitination factor E4A involved_in IEA InterPro GO_REF:0000002 NCBI chr11:113,193,986...113,233,660
Ensembl chr11:117,131,100...117,162,385 		JBrowse link
G UBE4B ubiquitination factor E4B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16314518) InterPro
MGI		 PMID:16314518 GO_REF:0000002 NCBI chr 1:8,801,707...8,949,465
Ensembl chr 1:10,033,084...10,178,759 		JBrowse link
G UBL4A ubiquitin like 4A involved_in ISO (PMID:20676083) ComplexPortal PMID:20676083 NCBI chr  X:143,925,494...143,928,444 JBrowse link
G UBL7 ubiquitin like 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr15:53,388,333...53,403,617
Ensembl chr15:73,008,913...73,024,208 		JBrowse link
G UBQLN1 ubiquilin 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:41,170,416...41,218,656
Ensembl chr 9:82,597,507...82,645,587 		JBrowse link
G UBQLN2 ubiquilin 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:48,829,844...48,835,040
Ensembl chr  X:56,981,985...56,983,859 		JBrowse link
G UBQLN3 ubiquilin 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:5,651,750...5,654,422
Ensembl chr11:5,334,275...5,336,242 		JBrowse link
G UBQLN4 ubiquilin 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:131,374,635...131,395,986
Ensembl chr 1:135,209,490...135,225,666 		JBrowse link
G UBR1 ubiquitin protein ligase E3 component n-recognin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11689692)
(PMID:14585983)		 Ensembl
MGI		 PMID:11689692 PMID:14585983 GO_REF:0000107 NCBI chr15:21,899,611...22,064,606
Ensembl chr15:40,060,111...40,221,725 		JBrowse link
G UBR2 ubiquitin protein ligase E3 component n-recognin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14585983) Ensembl
MGI		 PMID:14585983 GO_REF:0000107 NCBI chr 6:42,150,409...42,282,486
Ensembl chr 6:43,449,154...43,579,224 		JBrowse link
G UBR3 ubiquitin protein ligase E3 component n-recognin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:57,099,882...57,366,981
Ensembl chr2B:174,564,671...174,827,776 		JBrowse link
G UBR4 ubiquitin protein ligase E3 component n-recognin 4 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:18,032,528...18,168,954
Ensembl chr 1:19,079,779...19,215,578 		JBrowse link
G UCHL1 ubiquitin C-terminal hydrolase L1 involved_in ISO
IEA		 RGD
UniProt
InterPro		 PMID:11850463 GO_REF:0000002 GO_REF:0000104 RGD:70392 NCBI chr 4:35,580,755...35,592,314
Ensembl chr 4:41,428,759...41,440,129 		JBrowse link
G UCHL3 ubiquitin C-terminal hydrolase L3 involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chr13:56,776,436...56,832,539
Ensembl chr13:75,549,647...75,878,673 		JBrowse link
G UCHL5 ubiquitin C-terminal hydrolase L5 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr 1:168,471,501...168,519,366
Ensembl chr 1:172,764,606...172,811,880 		JBrowse link
G UFD1 ubiquitin recognition factor in ER associated degradation 1 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr22:2,209,590...2,238,449
Ensembl chr22:17,885,073...17,913,506 		JBrowse link
G UHRF1 ubiquitin like with PHD and ring finger domains 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:3,926,583...3,979,163
Ensembl chr19:4,872,753...4,925,330 		JBrowse link
G USP38 ubiquitin specific peptidase 38 involved_in IEA InterPro GO_REF:0000002 NCBI chr 4:135,545,818...135,582,520
Ensembl chr 4:146,844,850...146,881,486 		JBrowse link
G VCP valosin containing protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16810319) Ensembl
MGI		 PMID:16810319 GO_REF:0000107 NCBI chr 9:34,907,147...34,923,227
Ensembl chr 9:35,712,937...35,729,588 		JBrowse link
G WDR77 WD repeat domain 77 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:114,101,570...114,110,634
Ensembl chr 1:126,236,409...126,249,996 		JBrowse link
G WDR81 WD repeat domain 81 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:1,708,119...1,722,405
Ensembl chr17:1,594,162...1,616,138 		JBrowse link
G WDR91 WD repeat domain 91 NOT|involved_in ISO (PMID:28404643) UniProt PMID:28404643 NCBI chr 7:127,150,041...127,176,376
Ensembl chr 7:139,653,864...139,680,199 		JBrowse link
G WWP1 WW domain containing E3 ubiquitin protein ligase 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 8:83,039,632...83,165,010
Ensembl chr 8:85,009,951...85,134,671 		JBrowse link
G WWP2 WW domain containing E3 ubiquitin protein ligase 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr16:50,142,402...50,322,052
Ensembl chr16:69,525,246...69,703,831 		JBrowse link
G XBP1 X-box binding protein 1 involved_in ISO (MGI:5573106|PMID:24753614) UniProt PMID:24753614 MGI:5573106 NCBI chr22:9,863,479...9,869,491
Ensembl chr22:27,567,041...27,571,943 		JBrowse link
G ZNRF3 zinc and ring finger 3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr22:9,891,021...10,109,147
Ensembl chr22:27,742,301...27,810,427 		JBrowse link
G ZNRF4 zinc and ring finger 4 involved_in ISO (PMID:21205830) UniProt PMID:21205830 NCBI chr19:4,474,001...4,475,435 JBrowse link
ubiquitin-dependent protein catabolic process via the C-end degron rule pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CUL2 cullin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:35,127,771...35,210,108
Ensembl chr10:35,704,964...35,787,014 		JBrowse link
G CUL4A cullin 4A involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:94,350,484...94,409,183
Ensembl chr13:113,428,271...113,472,701 		JBrowse link
G DCAF12 DDB1 and CUL4 associated factor 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:33,923,900...33,964,443
Ensembl chr 9:34,733,845...34,775,624 		JBrowse link
G FEM1A fem-1 homolog A involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:3,811,911...3,821,373 JBrowse link
G FEM1B fem-1 homolog B involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:47,236,920...47,254,878
Ensembl chr15:66,005,614...66,024,007 		JBrowse link
G FEM1C fem-1 homolog C involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:110,878,460...110,902,650
Ensembl chr 5:116,675,163...116,699,085 		JBrowse link
G KLHDC1 kelch domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:30,272,009...30,334,693
Ensembl chr14:48,580,779...48,642,724 		JBrowse link
G KLHDC10 kelch domain containing 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:122,036,564...122,101,840
Ensembl chr 7:134,555,062...134,620,225 		JBrowse link
G KLHDC2 kelch domain containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:30,356,506...30,372,018
Ensembl chr14:48,668,025...48,679,105 		JBrowse link
G KLHDC3 kelch domain containing 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:42,606,462...42,613,565
Ensembl chr 6:43,900,902...43,908,556 		JBrowse link
G RBX1 ring-box 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:21,845,351...21,866,627
Ensembl chr22:39,941,405...39,962,175 		JBrowse link
G TRPC4AP transient receptor potential cation channel subfamily C member 4 associated protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:31,330,860...31,420,662
Ensembl chr20:32,455,536...32,545,780 		JBrowse link
ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHMP1A charged multivesicular body protein 1A involved_in IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chr16:70,398,021...70,411,383
Ensembl chr16:90,003,892...90,017,653 		JBrowse link
G CHMP1B charged multivesicular body protein 1B involved_in ISO (PMID:17984323) ComplexPortal PMID:17984323 NCBI chr18:2,452,393...2,455,509 JBrowse link
G CHMP2A charged multivesicular body protein 2A involved_in IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chr19:55,564,622...55,568,214
Ensembl chr19:64,377,986...64,381,417 		JBrowse link
G CHMP2B charged multivesicular body protein 2B involved_in IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chr 3:87,358,297...87,386,556
Ensembl chr 3:89,471,993...89,501,241 		JBrowse link
G CHMP3 charged multivesicular body protein 3 involved_in IEA UniProt
Ensembl		 GO_REF:0000107 GO_REF:0000117 NCBI chr2A:86,559,695...86,619,615
Ensembl chr2A:88,106,242...88,165,104 		JBrowse link
G CHMP4A charged multivesicular body protein 4A involved_in IEA UniProt GO_REF:0000117 NCBI chr14:4,985,642...4,989,985 JBrowse link
G CHMP4B charged multivesicular body protein 4B involved_in IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chr20:30,098,796...30,146,347
Ensembl chr20:31,236,778...31,285,264 		JBrowse link
G CHMP4C charged multivesicular body protein 4C involved_in IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chr 8:78,259,783...78,286,807
Ensembl chr 8:79,879,716...79,906,852 		JBrowse link
G CHMP5 charged multivesicular body protein 5 involved_in IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chr 9:33,043,148...33,059,564
Ensembl chr 9:33,851,377...33,867,942 		JBrowse link
G CHMP6 charged multivesicular body protein 6 involved_in IEA UniProt GO_REF:0000117 NCBI chr17:75,415,055...75,423,279
Ensembl chr17:81,144,837...81,151,962 		JBrowse link
G CHMP7 charged multivesicular body protein 7 involved_in IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chr 8:22,497,479...22,513,005
Ensembl chr 8:19,434,829...19,450,221 		JBrowse link
G HDAC6 histone deacetylase 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17785525) Ensembl
MGI		 PMID:17785525 GO_REF:0000107 NCBI chr  X:41,099,539...41,122,650
Ensembl chr  X:48,960,430...48,982,642 		JBrowse link
G NEDD4 NEDD4 E3 ubiquitin protein ligase involved_in ISO (PMID:20086093) BHF-UCL PMID:20086093 NCBI chr15:34,798,880...34,963,823
Ensembl chr15:53,118,411...53,283,076 		JBrowse link
G PLAA phospholipase A2 activating protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:26,749,607...26,793,580
Ensembl chr 9:27,357,437...27,401,103 		JBrowse link
G PTPN23 protein tyrosine phosphatase non-receptor type 23 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:47,280,706...47,314,268
Ensembl chr 3:48,379,810...48,413,488 		JBrowse link
G RNF115 ring finger protein 115 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:121,936,054...122,016,273
Ensembl chr 1:113,651,728...113,733,788 		JBrowse link
G RNF126 ring finger protein 126 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:491,699...494,175
Ensembl chr19:614,236...618,659 		JBrowse link
G TM9SF1 transmembrane 9 superfamily member 1 involved_in IEA UniProt GO_REF:0000117 NCBI chr14:4,965,352...4,972,476 JBrowse link
G TSG101 tumor susceptibility 101 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:18,518,110...18,564,814
Ensembl chr11:18,189,868...18,248,149 		JBrowse link
G UBAP1 ubiquitin associated protein 1 involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:34,015,077...34,088,908
Ensembl chr 9:34,825,825...34,898,868 		JBrowse link
G VPS28 VPS28 subunit of ESCRT-I involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:141,189,967...141,195,482
Ensembl chr 8:144,180,081...144,185,175 		JBrowse link
G VPS37A VPS37A subunit of ESCRT-I involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:16,459,660...16,508,333
Ensembl chr 8:13,404,889...13,456,046 		JBrowse link
G VPS37B VPS37B subunit of ESCRT-I involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:120,469,840...120,500,394
Ensembl chr12:124,703,077...124,733,889 		JBrowse link
G VPS37C VPS37C subunit of ESCRT-I involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:56,390,882...56,422,143
Ensembl chr11:59,828,856...59,844,854 		JBrowse link
G VPS37D VPS37D subunit of ESCRT-I involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr 7:80,798,226...80,824,883 JBrowse link
G VPS4A vacuolar protein sorting 4 homolog A involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:49,685,827...49,699,542
Ensembl chr16:69,074,091...69,085,714 		JBrowse link
G VPS4B vacuolar protein sorting 4 homolog B involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:56,749,439...56,782,660
Ensembl chr18:60,060,285...60,095,109 		JBrowse link
ubiquitin-dependent protein catabolic process via the N-end rule pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UBR1 ubiquitin protein ligase E3 component n-recognin 1 involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chr15:21,899,611...22,064,606
Ensembl chr15:40,060,111...40,221,725 		JBrowse link
G UBR2 ubiquitin protein ligase E3 component n-recognin 2 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr 6:42,150,409...42,282,486
Ensembl chr 6:43,449,154...43,579,224 		JBrowse link
G UBR3 ubiquitin protein ligase E3 component n-recognin 3 involved_in IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chr2B:57,099,882...57,366,981
Ensembl chr2B:174,564,671...174,827,776 		JBrowse link
G UBR4 ubiquitin protein ligase E3 component n-recognin 4 involved_in ISO (PMID:38030679) UniProt PMID:38030679 NCBI chr 1:18,032,528...18,168,954
Ensembl chr 1:19,079,779...19,215,578 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16442
    metabolic process 10307
      primary metabolic process 8924
        protein metabolic process 3923
          proteolysis 1362
            proteolysis involved in protein catabolic process 744
              modification-dependent protein catabolic process 583
                oxidation-dependent protein catabolic process 1
                prenylated protein catabolic process 3
                ubiquitin-dependent protein catabolic process + 570
Path 2
Term Annotations click to browse term
  biological_process 16442
    metabolic process 10307
      catabolic process 2460
        organic substance catabolic process 2050
          macromolecule catabolic process 1356
            protein catabolic process 991
              proteolysis involved in protein catabolic process 744
                modification-dependent protein catabolic process 583
                  oxidation-dependent protein catabolic process 1
                  prenylated protein catabolic process 3
                  ubiquitin-dependent protein catabolic process + 570
paths to the root