TP53INP2 (tumor protein p53 inducible nuclear protein 2) - Rat Genome Database

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Gene: TP53INP2 (tumor protein p53 inducible nuclear protein 2) Pan paniscus
Analyze
Symbol: TP53INP2
Name: tumor protein p53 inducible nuclear protein 2
RGD ID: 11835765
Description: ENCODES a protein that exhibits ubiquitin binding (inferred); INVOLVED IN macroautophagy (ortholog); negative regulation of protein localization (ortholog); osteoblast differentiation (ortholog); ASSOCIATED WITH genetic disease (ortholog); long QT syndrome (ortholog); FOUND IN autophagosome (inferred); cytoplasm (inferred); cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tumor protein p53-inducible nuclear protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22140,438,314 - 40,447,459 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12040,431,438 - 40,440,564 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02031,033,855 - 31,042,976 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12032,160,155 - 32,169,227 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2032,160,155 - 32,169,227 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
autophagosome  (IEA)
cytoplasm  (IEA)
cytosol  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
TP53INP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22140,438,314 - 40,447,459 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12040,431,438 - 40,440,564 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02031,033,855 - 31,042,976 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12032,160,155 - 32,169,227 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2032,160,155 - 32,169,227 (+)Ensemblpanpan1.1panPan2
TP53INP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382034,704,344 - 34,713,436 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2034,704,339 - 34,713,439 (+)EnsemblGRCh38hg38GRCh38
GRCh372033,292,148 - 33,301,240 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362032,755,809 - 32,764,898 (+)NCBINCBI36Build 36hg18NCBI36
Build 342032,755,808 - 32,764,898NCBI
Celera2030,041,236 - 30,050,322 (+)NCBICelera
Cytogenetic Map20q11.22NCBI
HuRef2030,071,142 - 30,080,228 (+)NCBIHuRef
CHM1_12033,193,630 - 33,202,719 (+)NCBICHM1_1
T2T-CHM13v2.02036,425,010 - 36,434,099 (+)NCBIT2T-CHM13v2.0
Trp53inp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392155,223,742 - 155,231,767 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2155,222,979 - 155,231,770 (+)EnsemblGRCm39 Ensembl
GRCm382155,381,811 - 155,389,847 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2155,381,059 - 155,389,850 (+)EnsemblGRCm38mm10GRCm38
MGSCv372155,207,592 - 155,215,583 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362155,073,297 - 155,081,288 (+)NCBIMGSCv36mm8
Celera2161,314,382 - 161,322,371 (+)NCBICelera
Cytogenetic Map2H1NCBI
cM Map277.26NCBI
Tp53inp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83164,341,618 - 164,350,270 (+)NCBIGRCr8
mRatBN7.23143,881,427 - 143,890,104 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3143,882,021 - 143,890,097 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3147,748,945 - 147,756,921 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03156,366,216 - 156,374,192 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03154,105,748 - 154,113,724 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03150,910,398 - 150,918,525 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3150,910,398 - 150,918,525 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03157,278,515 - 157,286,642 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43145,878,005 - 145,886,088 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13145,783,626 - 145,788,521 (+)NCBI
Celera3142,607,828 - 142,615,961 (+)NCBICelera
Cytogenetic Map3q41NCBI
Tp53inp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542226,640,239 - 26,649,291 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542226,640,239 - 26,649,291 (-)NCBIChiLan1.0ChiLan1.0
TP53INP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12423,768,208 - 23,801,268 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2423,792,687 - 23,799,331 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2423,413,778 - 23,446,850 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02424,458,763 - 24,492,030 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2424,487,400 - 24,488,930 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12423,746,851 - 23,779,874 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02423,841,988 - 23,875,011 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02424,280,850 - 24,313,887 (+)NCBIUU_Cfam_GSD_1.0
Tp53inp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640172,756,985 - 172,765,507 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365615,984,079 - 5,992,536 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365615,984,044 - 5,992,536 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TP53INP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1738,104,200 - 38,113,166 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11738,104,189 - 38,113,167 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21743,299,873 - 43,308,842 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TP53INP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1239,002,619 - 39,011,751 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl239,007,023 - 39,008,613 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605087,821,995 - 87,831,175 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tp53inp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248424,666,640 - 4,675,556 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248424,666,638 - 4,675,576 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000000962   ⟹   ENSPPAP00000000271
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2032,160,155 - 32,169,227 (+)Ensembl
RefSeq Acc Id: XM_003831828   ⟹   XP_003831876
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22140,438,314 - 40,447,459 (+)NCBI
NHGRI_mPanPan12040,431,438 - 40,440,564 (+)NCBI
Mhudiblu_PPA_v02031,033,857 - 31,042,976 (+)NCBI
PanPan1.12032,160,155 - 32,169,227 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008957205   ⟹   XP_008955453
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22140,438,740 - 40,447,459 (+)NCBI
NHGRI_mPanPan12040,431,845 - 40,440,564 (+)NCBI
Mhudiblu_PPA_v02031,034,268 - 31,042,976 (+)NCBI
PanPan1.12032,160,540 - 32,169,227 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008957207   ⟹   XP_008955455
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22140,438,319 - 40,447,459 (+)NCBI
NHGRI_mPanPan12040,431,438 - 40,440,564 (+)NCBI
Mhudiblu_PPA_v02031,033,855 - 31,042,976 (+)NCBI
PanPan1.12032,160,173 - 32,169,227 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063600799   ⟹   XP_063456869
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22140,438,766 - 40,447,459 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003831876 (Get FASTA)   NCBI Sequence Viewer  
  XP_008955453 (Get FASTA)   NCBI Sequence Viewer  
  XP_008955455 (Get FASTA)   NCBI Sequence Viewer  
  XP_063456869 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000000271
  ENSPPAP00000000271.1
Reference Protein Sequences
RefSeq Acc Id: XP_003831876   ⟸   XM_003831828
- UniProtKB: A0A2R8ZCD2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008955455   ⟸   XM_008957207
- UniProtKB: A0A2R8ZCD2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008955453   ⟸   XM_008957205
- UniProtKB: A0A2R8ZCD2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000000271   ⟸   ENSPPAT00000000962
RefSeq Acc Id: XP_063456869   ⟸   XM_063600799
- UniProtKB: A0A2R8ZCD2 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000000861 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000000962.1 UniProtKB/TrEMBL
InterPro TP53INP UniProtKB/TrEMBL
KEGG Report pps:100978010 UniProtKB/TrEMBL
NCBI Gene TP53INP2 ENTREZGENE
PANTHER PTHR31671 UniProtKB/TrEMBL
  PTHR31671:SF2 UniProtKB/TrEMBL
Pfam DOR UniProtKB/TrEMBL
UniProt A0A2R8ZCD2 ENTREZGENE, UniProtKB/TrEMBL