RNF167 (ring finger protein 167) - Rat Genome Database

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Gene: RNF167 (ring finger protein 167) Pan paniscus
Analyze
Symbol: RNF167
Name: ring finger protein 167
RGD ID: 11870524
Description: ENCODES a protein that exhibits metal ion binding (inferred); ubiquitin protein ligase activity (inferred); ubiquitin-protein transferase activity (inferred); INVOLVED IN lysosome localization (ortholog); ASSOCIATED WITH congenital myasthenic syndrome 4A (ortholog); genetic disease (ortholog); spastic ataxia 2 (ortholog); FOUND IN cytosol (ortholog); endolysosome membrane (ortholog); lysosomal membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: E3 ubiquitin-protein ligase RNF167
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21912,549,927 - 12,555,290 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11714,518,383 - 14,523,649 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0174,988,275 - 4,993,423 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1174,975,724 - 4,981,335 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl174,975,849 - 4,981,335 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
RNF167
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21912,549,927 - 12,555,290 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11714,518,383 - 14,523,649 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0174,988,275 - 4,993,423 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1174,975,724 - 4,981,335 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl174,975,849 - 4,981,335 (+)Ensemblpanpan1.1panPan2
RNF167
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38174,940,092 - 4,945,222 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl174,940,008 - 4,945,222 (+)EnsemblGRCh38hg38GRCh38
GRCh37174,843,387 - 4,848,517 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36174,784,375 - 4,789,262 (+)NCBINCBI36Build 36hg18NCBI36
Build 34174,784,374 - 4,789,260NCBI
Celera174,858,441 - 4,863,328 (+)NCBICelera
Cytogenetic Map17p13.2NCBI
HuRef174,731,220 - 4,736,107 (+)NCBIHuRef
CHM1_1174,852,968 - 4,857,851 (+)NCBICHM1_1
T2T-CHM13v2.0174,830,440 - 4,835,570 (+)NCBIT2T-CHM13v2.0
Rnf167
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,538,056 - 70,542,247 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1170,538,061 - 70,542,247 (+)EnsemblGRCm39 Ensembl
GRCm381170,647,230 - 70,651,421 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,647,235 - 70,651,421 (+)EnsemblGRCm38mm10GRCm38
MGSCv371170,461,091 - 70,464,923 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361170,463,784 - 70,467,616 (+)NCBIMGSCv36mm8
Celera1178,198,564 - 78,202,365 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1143.21NCBI
Rnf167
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81055,859,254 - 55,863,546 (+)NCBIGRCr8
mRatBN7.21055,360,603 - 55,364,927 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1055,360,543 - 55,364,927 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1060,041,245 - 60,045,537 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01059,529,751 - 59,534,043 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01055,028,857 - 55,033,149 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01057,268,331 - 57,272,667 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1057,268,375 - 57,272,660 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01057,013,953 - 57,018,261 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41057,527,033 - 57,531,325 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11057,540,655 - 57,544,941 (+)NCBI
Celera1054,506,191 - 54,510,483 (+)NCBICelera
Cytogenetic Map10q24NCBI
Rnf167
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546710,353,291 - 10,357,021 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546710,352,650 - 10,357,214 (+)NCBIChiLan1.0ChiLan1.0
RNF167
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1531,673,540 - 31,676,705 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl531,674,284 - 31,676,441 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha531,810,460 - 31,815,311 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0531,775,873 - 31,780,727 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl531,775,873 - 31,780,678 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1531,742,411 - 31,747,298 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0531,702,117 - 31,706,971 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0531,878,493 - 31,883,347 (-)NCBIUU_Cfam_GSD_1.0
Rnf167
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560253,129,789 - 53,134,251 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366772,766,907 - 2,770,225 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366772,766,724 - 2,771,111 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF167
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1251,966,032 - 51,970,898 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11251,966,028 - 51,970,811 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21254,034,738 - 54,039,447 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RNF167
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1164,421,744 - 4,426,433 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl164,421,744 - 4,428,576 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605917,207,418 - 17,212,510 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnf167
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247868,798,696 - 8,802,427 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247868,797,907 - 8,802,623 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008962541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008962544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008962545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008962548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008962549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008962550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024926054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063598902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSPPAT00000053989   ⟹   ENSPPAP00000031125
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl174,975,849 - 4,981,335 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000053994   ⟹   ENSPPAP00000031130
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl174,976,621 - 4,979,055 (+)Ensembl
RefSeq Acc Id: XM_008962541   ⟹   XP_008960789
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21912,549,927 - 12,555,290 (+)NCBI
NHGRI_mPanPan11714,518,383 - 14,523,649 (+)NCBI
Mhudiblu_PPA_v0174,988,275 - 4,993,423 (+)NCBI
PanPan1.1174,975,724 - 4,981,335 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008962544   ⟹   XP_008960792
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21912,550,144 - 12,555,290 (+)NCBI
NHGRI_mPanPan11714,518,502 - 14,523,649 (+)NCBI
Mhudiblu_PPA_v0174,988,283 - 4,993,423 (+)NCBI
PanPan1.1174,975,724 - 4,981,335 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008962545   ⟹   XP_008960793
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21912,550,275 - 12,555,290 (+)NCBI
NHGRI_mPanPan11714,518,633 - 14,523,649 (+)NCBI
Mhudiblu_PPA_v0174,988,431 - 4,993,423 (+)NCBI
PanPan1.1174,975,724 - 4,981,335 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008962549   ⟹   XP_008960797
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21912,550,368 - 12,555,290 (+)NCBI
NHGRI_mPanPan11714,518,723 - 14,523,649 (+)NCBI
Mhudiblu_PPA_v0174,988,459 - 4,993,423 (+)NCBI
PanPan1.1174,975,724 - 4,981,335 (+)NCBI
Sequence:
RefSeq Acc Id: XM_024926054   ⟹   XP_024781822
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21912,550,029 - 12,555,290 (+)NCBI
NHGRI_mPanPan11714,518,633 - 14,523,649 (+)NCBI
Mhudiblu_PPA_v0174,988,405 - 4,993,423 (+)NCBI
PanPan1.1174,975,724 - 4,981,335 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034941346   ⟹   XP_034797237
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21912,550,144 - 12,555,290 (+)NCBI
NHGRI_mPanPan11714,518,503 - 14,523,649 (+)NCBI
Mhudiblu_PPA_v0174,988,275 - 4,993,423 (+)NCBI
RefSeq Acc Id: XM_034941347   ⟹   XP_034797238
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21912,550,275 - 12,555,290 (+)NCBI
NHGRI_mPanPan11714,518,633 - 14,523,649 (+)NCBI
Mhudiblu_PPA_v0174,988,405 - 4,993,423 (+)NCBI
RefSeq Acc Id: XM_034941349   ⟹   XP_034797240
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21912,550,144 - 12,555,290 (+)NCBI
NHGRI_mPanPan11714,518,502 - 14,523,649 (+)NCBI
Mhudiblu_PPA_v0174,988,280 - 4,993,423 (+)NCBI
RefSeq Acc Id: XM_034941350   ⟹   XP_034797241
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21912,550,285 - 12,555,290 (+)NCBI
NHGRI_mPanPan11714,518,644 - 14,523,649 (+)NCBI
Mhudiblu_PPA_v0174,988,425 - 4,993,423 (+)NCBI
RefSeq Acc Id: XM_034941352   ⟹   XP_034797243
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21912,550,144 - 12,555,290 (+)NCBI
NHGRI_mPanPan11714,518,502 - 14,523,649 (+)NCBI
Mhudiblu_PPA_v0174,988,280 - 4,993,423 (+)NCBI
RefSeq Acc Id: XM_034941353   ⟹   XP_034797244
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21912,550,313 - 12,555,290 (+)NCBI
NHGRI_mPanPan11714,518,687 - 14,523,649 (+)NCBI
Mhudiblu_PPA_v0174,988,458 - 4,993,423 (+)NCBI
RefSeq Acc Id: XM_034941354   ⟹   XP_034797245
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21912,550,145 - 12,555,290 (+)NCBI
NHGRI_mPanPan11714,518,503 - 14,523,649 (+)NCBI
Mhudiblu_PPA_v0174,988,281 - 4,993,423 (+)NCBI
RefSeq Acc Id: XM_063598902   ⟹   XP_063454972
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21912,550,422 - 12,555,290 (+)NCBI
RefSeq Acc Id: XP_008960793   ⟸   XM_008962545
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BN69 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008960789   ⟸   XM_008962541
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BN69 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008960792   ⟸   XM_008962544
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BN69 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008960797   ⟸   XM_008962549
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_024781822   ⟸   XM_024926054
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BN69 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034797237   ⟸   XM_034941346
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034797240   ⟸   XM_034941349
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034797243   ⟸   XM_034941352
- Peptide Label: isoform X3
RefSeq Acc Id: XP_034797245   ⟸   XM_034941354
- Peptide Label: isoform X3
RefSeq Acc Id: XP_034797238   ⟸   XM_034941347
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034797241   ⟸   XM_034941350
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034797244   ⟸   XM_034941353
- Peptide Label: isoform X3
RefSeq Acc Id: ENSPPAP00000031130   ⟸   ENSPPAT00000053994
RefSeq Acc Id: ENSPPAP00000031125   ⟸   ENSPPAT00000053989
RefSeq Acc Id: XP_063454972   ⟸   XM_063598902
- Peptide Label: isoform X1
Protein Domains
PA   RING-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000038506 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000053989.1 UniProtKB/TrEMBL
  ENSPPAT00000053994.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
  3.50.30.30 UniProtKB/TrEMBL
InterPro PA_dom_sf UniProtKB/TrEMBL
  PA_domain UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING-CH UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  ZNRF4/RNF13/RNF167_PA UniProtKB/TrEMBL
KEGG Report pps:100982265 UniProtKB/TrEMBL
NCBI Gene RNF167 ENTREZGENE
PANTHER PROTEASE-ASSOCIATED (PA) RING_U-BOX ZINC FINGER FAMILY PROTEIN UniProtKB/TrEMBL
  PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED UniProtKB/TrEMBL
Pfam PF02225 UniProtKB/TrEMBL
  zf-RING_2 UniProtKB/TrEMBL
PROSITE ZF_RING_2 UniProtKB/TrEMBL
SMART RING UniProtKB/TrEMBL
  RINGv UniProtKB/TrEMBL
Superfamily-SCOP PA domain UniProtKB/TrEMBL
  RING/U-box UniProtKB/TrEMBL
UniProt A0A2R9BN69 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BN73_PANPA UniProtKB/TrEMBL