RLIM (ring finger protein, LIM domain interacting) - Rat Genome Database

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Gene: RLIM (ring finger protein, LIM domain interacting) Pan paniscus
Analyze
Symbol: RLIM
Name: ring finger protein, LIM domain interacting
RGD ID: 11987600
Description: ENCODES a protein that exhibits transferase activity (inferred); ubiquitin protein ligase activity (inferred); ubiquitin-protein transferase activity (inferred); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); random inactivation of X chromosome (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Developmental Disabilities (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: E3 ubiquitin-protein ligase RLIM
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X74,266,972 - 74,296,319 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X74,270,836 - 74,299,929 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X63,834,345 - 63,865,874 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X73,952,928 - 73,982,412 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX73,959,365 - 73,982,412 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA)
membrane  (IEA)
nucleoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
RLIM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X74,266,972 - 74,296,319 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X74,270,836 - 74,299,929 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X63,834,345 - 63,865,874 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X73,952,928 - 73,982,412 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX73,959,365 - 73,982,412 (-)Ensemblpanpan1.1panPan2
RLIM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X74,582,976 - 74,614,624 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX74,582,976 - 74,614,624 (-)EnsemblGRCh38hg38GRCh38
GRCh37X73,802,811 - 73,834,459 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X73,726,765 - 73,751,168 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X73,593,066 - 73,617,464NCBI
CeleraX74,086,277 - 74,117,928 (-)NCBICelera
Cytogenetic MapXq13.2NCBI
HuRefX67,437,612 - 67,469,342 (-)NCBIHuRef
CHM1_1X73,695,686 - 73,727,336 (-)NCBICHM1_1
T2T-CHM13v2.0X73,016,616 - 73,048,268 (-)NCBIT2T-CHM13v2.0
Rlim
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X103,000,770 - 103,024,886 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX103,000,769 - 103,024,890 (-)EnsemblGRCm39 Ensembl
GRCm38X103,957,163 - 103,981,296 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX103,957,163 - 103,981,284 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X101,152,506 - 101,176,623 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X100,159,886 - 100,184,003 (-)NCBIMGSCv36mm8
CeleraX90,856,674 - 90,880,735 (-)NCBICelera
Cytogenetic MapXDNCBI
cM MapX46.42NCBI
Rlim
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X73,048,983 - 73,070,302 (-)NCBIGRCr8
mRatBN7.2X68,983,259 - 69,004,368 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX68,988,375 - 69,004,271 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX70,497,482 - 70,513,377 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X73,997,771 - 74,013,666 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X71,558,959 - 71,574,855 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X73,757,664 - 73,778,763 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX74,843,186 - 74,847,379 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 EnsemblX73,762,691 - 73,778,674 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X75,641,176 - 75,662,560 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X91,969,453 - 91,985,349 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX70,345,584 - 70,361,477 (-)NCBICelera
Cytogenetic MapXq22NCBI
Rlim
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955562510,739 - 531,830 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955562508,723 - 531,699 (-)NCBIChiLan1.0ChiLan1.0
RLIM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X57,879,749 - 57,905,805 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX57,885,123 - 57,889,253 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX49,058,848 - 49,084,812 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X59,093,206 - 59,119,165 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX59,093,226 - 59,118,999 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X56,838,049 - 56,864,001 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X58,417,151 - 58,443,102 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X58,024,547 - 58,050,513 (-)NCBIUU_Cfam_GSD_1.0
Rlim
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X43,985,980 - 44,017,247 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936683934,338 - 961,863 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936683930,537 - 961,792 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RLIM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX59,893,146 - 59,920,182 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X59,889,799 - 59,920,464 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X67,848,216 - 67,878,753 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RLIM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X64,178,159 - 64,205,759 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606717,510,418 - 17,539,845 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rlim
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248366,257,740 - 6,290,054 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000032081   ⟹   ENSPPAP00000009438
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX73,959,365 - 73,982,412 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000032084   ⟹   ENSPPAP00000009441
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX73,959,365 - 73,963,899 (-)Ensembl
RefSeq Acc Id: XM_003824392   ⟹   XP_003824440
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X74,266,972 - 74,296,319 (-)NCBI
NHGRI_mPanPan1X74,270,836 - 74,299,929 (-)NCBI
Mhudiblu_PPA_v0X63,834,345 - 63,865,874 (-)NCBI
PanPan1.1X73,952,928 - 73,982,412 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003824393   ⟹   XP_003824441
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X74,266,972 - 74,296,304 (-)NCBI
NHGRI_mPanPan1X74,270,836 - 74,299,909 (-)NCBI
Mhudiblu_PPA_v0X63,834,345 - 63,865,874 (-)NCBI
PanPan1.1X73,952,928 - 73,982,412 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003824440 (Get FASTA)   NCBI Sequence Viewer  
  XP_003824441 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000009438
  ENSPPAP00000009438.1
  ENSPPAP00000009441.1
Reference Protein Sequences
RefSeq Acc Id: XP_003824440   ⟸   XM_003824392
- UniProtKB: A0A2R9A0I2 (UniProtKB/TrEMBL),   A0A2R8ZWU1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003824441   ⟸   XM_003824393
- UniProtKB: A0A2R9A0I2 (UniProtKB/TrEMBL),   A0A2R8ZWU1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000009441   ⟸   ENSPPAT00000032084
RefSeq Acc Id: ENSPPAP00000009438   ⟸   ENSPPAT00000032081
Protein Domains
RING-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000027958 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000032081.1 UniProtKB/TrEMBL
  ENSPPAT00000032084.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
KEGG Report pps:100980577 UniProtKB/TrEMBL
NCBI Gene RLIM ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE RLIM UniProtKB/TrEMBL
  SI:CH211-59O9.10 UniProtKB/TrEMBL
Pfam zf-RING_2 UniProtKB/TrEMBL
PROSITE ZF_RING_2 UniProtKB/TrEMBL
SMART RING UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
UniProt A0A2R8ZWU1 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9A0I2 ENTREZGENE, UniProtKB/TrEMBL