TRIP4 (thyroid hormone receptor interactor 4) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: TRIP4 (thyroid hormone receptor interactor 4) Pan paniscus
Analyze
Symbol: TRIP4
Name: thyroid hormone receptor interactor 4
RGD ID: 11800523
Description: ENCODES a protein that exhibits estrogen receptor binding (ortholog); histone acetyltransferase binding (ortholog); nuclear receptor binding (ortholog); INVOLVED IN intracellular estrogen receptor signaling pathway (ortholog); positive regulation of transcription, DNA-templated (ortholog); regulation of myoblast differentiation (ortholog); ASSOCIATED WITH Congenital Muscular Dystrophy, Davignon-Chauveau Type (ortholog); nemaline myopathy 6 (ortholog); Spinal Muscular Atrophy with Congenital Bone Fractures 1 (ortholog); FOUND IN activating signal cointegrator 1 complex (ortholog); centrosome (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: activating signal cointegrator 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11561,623,584 - 61,692,963 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1561,623,584 - 61,692,963 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01543,332,107 - 43,400,522 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
TRIP4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11561,623,584 - 61,692,963 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1561,623,584 - 61,692,963 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01543,332,107 - 43,400,522 (+)NCBIMhudiblu_PPA_v0panPan3
TRIP4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1564,387,748 - 64,455,303 (+)EnsemblGRCh38hg38GRCh38
GRCh381564,387,836 - 64,455,303 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371564,680,035 - 64,747,502 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361562,467,073 - 62,534,555 (+)NCBINCBI36hg18NCBI36
Build 341562,467,072 - 62,534,553NCBI
Celera1541,558,018 - 41,625,175 (+)NCBI
Cytogenetic Map15q22.31NCBI
HuRef1541,503,896 - 41,571,686 (+)NCBIHuRef
CHM1_11564,799,393 - 64,866,848 (+)NCBICHM1_1
Trip4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39965,736,208 - 65,816,150 (-)NCBIGRCm39mm39
GRCm39 Ensembl965,736,212 - 65,816,076 (-)Ensembl
GRCm38965,828,926 - 65,908,875 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl965,828,930 - 65,908,794 (-)EnsemblGRCm38mm10GRCm38
MGSCv37965,676,733 - 65,756,601 (-)NCBIGRCm37mm9NCBIm37
MGSCv36965,630,231 - 65,706,792 (-)NCBImm8
Celera963,066,228 - 63,147,772 (-)NCBICelera
Cytogenetic Map9CNCBI
Trip4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2866,351,861 - 66,439,679 (-)NCBI
Rnor_6.0 Ensembl871,371,370 - 71,533,459 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0871,369,121 - 71,533,281 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0871,147,159 - 71,205,615 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0871,051,695 - 71,058,129 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4870,090,427 - 70,179,003 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1870,109,684 - 70,178,264 (-)NCBI
Celera865,743,666 - 65,829,403 (-)NCBICelera
Cytogenetic Map8q24NCBI
Trip4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545011,005,849 - 11,088,192 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545011,005,842 - 11,088,192 (-)NCBIChiLan1.0ChiLan1.0
TRIP4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl3028,851,374 - 28,908,940 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.13028,851,314 - 28,908,991 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Trip4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493647124,795,718 - 24,868,440 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIP4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1107,586,031 - 107,655,214 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11107,588,778 - 107,654,679 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21118,414,252 - 118,618,557 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRIP4
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12619,065,934 - 19,133,489 (-)NCBI
ChlSab1.1 Ensembl2619,065,887 - 19,133,448 (-)Ensembl
Trip4
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247818,118,382 - 8,191,823 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000019678   ⟹   ENSPPAP00000004243
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1561,623,584 - 61,692,963 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000019701   ⟹   ENSPPAP00000004249
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1561,623,639 - 61,656,973 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000019702   ⟹   ENSPPAP00000004250
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1561,623,639 - 61,632,792 (+)Ensembl
RefSeq Acc Id: XM_003827953   ⟹   XP_003828001
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11561,623,584 - 61,692,963 (+)NCBI
Mhudiblu_PPA_v01543,332,107 - 43,400,522 (+)NCBI
Sequence:
RefSeq Acc Id: XM_024925611   ⟹   XP_024781379
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11561,623,585 - 61,692,963 (+)NCBI
Mhudiblu_PPA_v01543,332,133 - 43,400,522 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003828001 (Get FASTA)   NCBI Sequence Viewer  
  XP_024781379 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003828001   ⟸   XM_003827953
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_024781379   ⟸   XM_024925611
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSPPAP00000004249   ⟸   ENSPPAT00000019701
RefSeq Acc Id: ENSPPAP00000004250   ⟸   ENSPPAT00000019702
RefSeq Acc Id: ENSPPAP00000004243   ⟸   ENSPPAT00000019678
Protein Domains
ASCH   zf-C2HC5


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000017953 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000004243 ENTREZGENE, UniProtKB/TrEMBL
  ENSPPAP00000004249 UniProtKB/TrEMBL
  ENSPPAP00000004250 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000019678 UniProtKB/TrEMBL
  ENSPPAT00000019701 UniProtKB/TrEMBL
  ENSPPAT00000019702 UniProtKB/TrEMBL
InterPro ASCH_domain UniProtKB/TrEMBL
  PUA-like_sf UniProtKB/TrEMBL
  TRIP4-like UniProtKB/TrEMBL
  Znf_C2HC5 UniProtKB/TrEMBL
KEGG Report pps:100975964 UniProtKB/TrEMBL
NCBI Gene TRIP4 ENTREZGENE
PANTHER PTHR12963 UniProtKB/TrEMBL
Pfam ASCH UniProtKB/TrEMBL
  zf-C2HC5 UniProtKB/TrEMBL
SMART ASCH UniProtKB/TrEMBL
Superfamily-SCOP SSF88697 UniProtKB/TrEMBL
UniProt A0A2R8ZGY6_PANPA UniProtKB/TrEMBL
  A0A2R8ZGZ7_PANPA UniProtKB/TrEMBL
  A0A2R8ZN84_PANPA UniProtKB/TrEMBL