HERC6 (HECT and RLD domain containing E3 ubiquitin protein ligase family member 6) - Rat Genome Database

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Gene: HERC6 (HECT and RLD domain containing E3 ubiquitin protein ligase family member 6) Pan paniscus
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Symbol: HERC6
Name: HECT and RLD domain containing E3 ubiquitin protein ligase family member 6
RGD ID: 11767910
Description: ENCODES a protein that exhibits ubiquitin protein ligase activity (inferred); ubiquitin-protein transferase activity (inferred); INVOLVED IN hematopoietic progenitor cell differentiation (ortholog); response to bacterium (ortholog); ASSOCIATED WITH autosomal dominant polycystic kidney disease (ortholog); genetic disease (ortholog); Human Influenza (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: probable E3 ubiquitin-protein ligase HERC6
RGD Orthologs
Human
Mouse
Rat
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2386,383,628 - 86,447,450 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1486,646,107 - 86,709,920 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0480,669,642 - 80,733,409 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1491,393,215 - 91,456,399 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl491,393,415 - 91,455,756 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA)
nucleoplasm  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
HERC6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2386,383,628 - 86,447,450 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1486,646,107 - 86,709,920 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0480,669,642 - 80,733,409 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1491,393,215 - 91,456,399 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl491,393,415 - 91,455,756 (+)Ensemblpanpan1.1panPan2
HERC6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38488,378,852 - 88,443,097 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl488,378,739 - 88,443,097 (+)EnsemblGRCh38hg38GRCh38
GRCh37489,300,004 - 89,364,249 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36489,518,915 - 89,583,272 (+)NCBINCBI36Build 36hg18NCBI36
Build 34489,657,197 - 89,721,426NCBI
Celera486,596,361 - 86,660,787 (+)NCBICelera
Cytogenetic Map4q22.1NCBI
HuRef485,051,870 - 85,116,214 (+)NCBIHuRef
CHM1_1489,276,425 - 89,340,723 (+)NCBICHM1_1
T2T-CHM13v2.0491,709,824 - 91,774,756 (+)NCBIT2T-CHM13v2.0
Herc6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39657,557,977 - 57,642,121 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl657,557,985 - 57,641,617 (+)EnsemblGRCm39 Ensembl
GRCm38657,580,992 - 57,665,136 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl657,581,000 - 57,664,632 (+)EnsemblGRCm38mm10GRCm38
MGSCv37657,530,986 - 57,615,130 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36657,530,994 - 57,615,130 (+)NCBIMGSCv36mm8
Celera658,333,270 - 58,408,797 (+)NCBICelera
Cytogenetic Map6B3NCBI
cM Map627.82NCBI
Herc6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8488,854,612 - 88,897,043 (-)NCBIGRCr8
mRatBN7.2487,524,470 - 87,566,895 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl487,524,493 - 87,581,744 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx492,746,445 - 92,788,704 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0488,521,840 - 88,564,101 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0486,884,872 - 86,927,193 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0488,606,851 - 88,649,424 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl488,607,518 - 88,649,216 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04153,429,540 - 153,491,797 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4487,278,557 - 87,343,287 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera482,289,544 - 82,332,364 (-)NCBICelera
Cytogenetic Map4q24NCBI
HERC6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13211,624,883 - 11,751,305 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3211,694,963 - 11,750,719 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3230,203,843 - 30,259,601 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03211,748,514 - 11,804,925 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3211,748,556 - 11,804,342 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13211,831,645 - 11,886,841 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03211,656,819 - 11,712,063 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03228,204,467 - 28,260,972 (-)NCBIUU_Cfam_GSD_1.0
Herc6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530129,650,996 - 29,692,797 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936685863,212 - 911,202 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936685863,198 - 916,774 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HERC6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8130,594,939 - 130,665,145 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18130,594,941 - 130,665,591 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
HERC6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1736,739,524 - 36,803,493 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl736,739,566 - 36,803,915 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603715,490,201 - 15,555,183 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000014842   ⟹   ENSPPAP00000003209
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl491,393,415 - 91,455,756 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000014855   ⟹   ENSPPAP00000003211
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl491,393,415 - 91,419,322 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000014869   ⟹   ENSPPAP00000003216
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl491,393,415 - 91,412,958 (+)Ensembl
RefSeq Acc Id: XM_008963657   ⟹   XP_008961905
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2386,383,629 - 86,447,450 (+)NCBI
NHGRI_mPanPan1486,646,108 - 86,709,920 (+)NCBI
Mhudiblu_PPA_v0480,669,642 - 80,733,409 (+)NCBI
PanPan1.1491,393,215 - 91,456,399 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008963658   ⟹   XP_008961906
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2386,383,628 - 86,447,450 (+)NCBI
NHGRI_mPanPan1486,646,107 - 86,709,920 (+)NCBI
Mhudiblu_PPA_v0480,669,642 - 80,733,409 (+)NCBI
PanPan1.1491,393,215 - 91,456,250 (+)NCBI
Sequence:
RefSeq Acc Id: XM_055111619   ⟹   XP_054967594
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2386,383,631 - 86,447,450 (+)NCBI
NHGRI_mPanPan1486,646,110 - 86,709,920 (+)NCBI
Protein Sequences
Protein RefSeqs XP_008961905 (Get FASTA)   NCBI Sequence Viewer  
  XP_008961906 (Get FASTA)   NCBI Sequence Viewer  
  XP_054967594 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000003209
  ENSPPAP00000003209.1
  ENSPPAP00000003211.1
  ENSPPAP00000003216.1
RefSeq Acc Id: XP_008961905   ⟸   XM_008963657
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZHH3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008961906   ⟸   XM_008963658
- Peptide Label: isoform X2
- UniProtKB: A0A2R8ZHH3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000003216   ⟸   ENSPPAT00000014869
RefSeq Acc Id: ENSPPAP00000003211   ⟸   ENSPPAT00000014855
RefSeq Acc Id: ENSPPAP00000003209   ⟸   ENSPPAT00000014842
RefSeq Acc Id: XP_054967594   ⟸   XM_055111619
- Peptide Label: isoform X3
- UniProtKB: A0A2R8ZHH3 (UniProtKB/TrEMBL)
Protein Domains
HECT


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000013440 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000014842.1 UniProtKB/TrEMBL
  ENSPPAT00000014855.1 UniProtKB/TrEMBL
  ENSPPAT00000014869.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.30 UniProtKB/TrEMBL
  Hect, E3 ligase catalytic domain UniProtKB/TrEMBL
  Hect, E3 ligase catalytic domain UniProtKB/TrEMBL
  Hect, E3 ligase catalytic domains UniProtKB/TrEMBL
InterPro HECT_dom UniProtKB/TrEMBL
  Hect_E3_ubiquitin_ligase UniProtKB/TrEMBL
  RCC1/BLIP-II UniProtKB/TrEMBL
  Reg_chr_condens UniProtKB/TrEMBL
NCBI Gene HERC6 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE HERC6-RELATED UniProtKB/TrEMBL
  RCC1 REPEAT-CONTAINING PROTEIN DDB_G0284033 UniProtKB/TrEMBL
  REGULATOR OF CHROMOSOME CONDENSATION UniProtKB/TrEMBL
  UBIQUITIN-PROTEIN LIGASE E3A-RELATED UniProtKB/TrEMBL
Pfam HECT UniProtKB/TrEMBL
  RCC1 UniProtKB/TrEMBL
  RCC1_2 UniProtKB/TrEMBL
PRINTS RCCNDNSATION UniProtKB/TrEMBL
PROSITE HECT UniProtKB/TrEMBL
  RCC1_2 UniProtKB/TrEMBL
  RCC1_3 UniProtKB/TrEMBL
SMART HECTc UniProtKB/TrEMBL
Superfamily-SCOP SSF50985 UniProtKB/TrEMBL
  SSF56204 UniProtKB/TrEMBL
UniProt A0A2R8ZDU9_PANPA UniProtKB/TrEMBL
  A0A2R8ZDV5_PANPA UniProtKB/TrEMBL
  A0A2R8ZHH3 ENTREZGENE, UniProtKB/TrEMBL