UBXN2A (UBX domain protein 2A) - Rat Genome Database

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Gene: UBXN2A (UBX domain protein 2A) Pan paniscus
Analyze
Symbol: UBXN2A
Name: UBX domain protein 2A
RGD ID: 11774144
Description: ENCODES a protein that exhibits acetylcholine receptor binding (inferred); ubiquitin binding (inferred); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); regulation of gene expression (ortholog); regulation of protein catabolic process (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cis-Golgi network (inferred); cytoplasm (inferred); cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: UBX domain-containing protein 2A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212102,517,064 - 102,588,423 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A102,516,946 - 102,592,381 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A23,928,207 - 24,003,550 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A24,026,807 - 24,097,309 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A24,038,567 - 24,097,309 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
UBXN2A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212102,517,064 - 102,588,423 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A102,516,946 - 102,592,381 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A23,928,207 - 24,003,550 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A24,026,807 - 24,097,309 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A24,038,567 - 24,097,309 (+)Ensemblpanpan1.1panPan2
UBXN2A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38223,927,278 - 24,004,909 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl223,927,285 - 24,004,909 (+)EnsemblGRCh38hg38GRCh38
GRCh37224,163,333 - 24,227,779 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36224,016,880 - 24,077,200 (+)NCBINCBI36Build 36hg18NCBI36
Build 34224,075,026 - 24,135,342NCBI
Celera224,003,779 - 24,064,099 (+)NCBICelera
Cytogenetic Map2p23.3NCBI
HuRef223,902,602 - 23,962,865 (+)NCBIHuRef
CHM1_1224,092,767 - 24,153,048 (+)NCBICHM1_1
T2T-CHM13v2.0223,961,872 - 24,039,606 (+)NCBIT2T-CHM13v2.0
Ubxn2a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39124,926,814 - 4,957,749 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl124,929,032 - 4,957,705 (-)EnsemblGRCm39 Ensembl
GRCm38124,876,814 - 4,907,553 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl124,879,032 - 4,907,705 (-)EnsemblGRCm38mm10GRCm38
MGSCv37124,885,838 - 4,914,326 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36124,904,898 - 4,933,359 (-)NCBIMGSCv36mm8
Celera124,810,435 - 4,838,841 (-)NCBICelera
Cytogenetic Map12A1.1NCBI
cM Map122.13NCBI
Ubxn2a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8633,603,804 - 33,645,958 (-)NCBIGRCr8
mRatBN7.2627,884,364 - 27,912,767 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2052,408,176 - 52,409,580 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl627,884,680 - 27,912,649 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx628,176,616 - 28,205,014 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0628,492,515 - 28,520,913 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0627,967,067 - 27,995,468 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0628,969,471 - 28,997,987 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl628,973,025 - 28,994,519 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0640,889,150 - 40,917,659 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4629,554,836 - 29,558,146 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera627,352,834 - 27,380,729 (-)NCBICelera
Cytogenetic Map6q14NCBI
Ubxn2a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554696,173,524 - 6,214,568 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554696,173,524 - 6,214,568 (+)NCBIChiLan1.0ChiLan1.0
UBXN2A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11718,446,856 - 18,491,797 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1718,408,251 - 18,505,676 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1718,345,749 - 18,390,262 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01718,617,026 - 18,661,775 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11718,458,087 - 18,502,677 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01718,466,249 - 18,511,348 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01718,507,971 - 18,552,677 (+)NCBIUU_Cfam_GSD_1.0
Ubxn2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629262,854,174 - 62,867,829 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364937,971,960 - 7,985,314 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364937,969,271 - 7,978,537 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBXN2A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3114,673,035 - 114,714,178 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13114,667,278 - 114,714,185 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23121,938,609 - 121,979,160 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UBXN2A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11483,672,327 - 83,722,961 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1483,673,282 - 83,703,633 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604528,439,005 - 28,494,692 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ubxn2a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247386,323,404 - 6,341,996 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247386,313,925 - 6,341,999 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000052521   ⟹   ENSPPAP00000029671
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A24,038,567 - 24,097,309 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000052524   ⟹   ENSPPAP00000029674
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A24,066,472 - 24,096,348 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000052527   ⟹   ENSPPAP00000029677
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A24,069,684 - 24,096,348 (+)Ensembl
RefSeq Acc Id: XM_008952376   ⟹   XP_008950624
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v212102,517,064 - 102,588,423 (-)NCBI
NHGRI_mPanPan12A102,516,946 - 102,592,381 (-)NCBI
Mhudiblu_PPA_v02A23,928,208 - 23,998,791 (+)NCBI
PanPan1.12A24,026,807 - 24,097,309 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034952691   ⟹   XP_034808582
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v212102,517,064 - 102,575,819 (-)NCBI
NHGRI_mPanPan12A102,516,946 - 102,579,135 (-)NCBI
Mhudiblu_PPA_v02A23,941,337 - 24,003,550 (+)NCBI
RefSeq Acc Id: XM_034952692   ⟹   XP_034808583
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v212102,517,064 - 102,575,983 (-)NCBI
NHGRI_mPanPan12A102,516,946 - 102,591,978 (-)NCBI
Mhudiblu_PPA_v02A23,940,457 - 23,998,791 (+)NCBI
RefSeq Acc Id: XM_034952694   ⟹   XP_034808585
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v212102,517,064 - 102,574,944 (-)NCBI
NHGRI_mPanPan12A102,516,946 - 102,578,833 (-)NCBI
Mhudiblu_PPA_v02A23,941,682 - 23,998,791 (+)NCBI
RefSeq Acc Id: XM_055108177   ⟹   XP_054964152
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v212102,517,064 - 102,576,037 (-)NCBI
NHGRI_mPanPan12A102,516,946 - 102,591,978 (-)NCBI
RefSeq Acc Id: XM_055108178   ⟹   XP_054964153
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v212102,517,064 - 102,564,053 (-)NCBI
NHGRI_mPanPan12A102,516,946 - 102,568,031 (-)NCBI
RefSeq Acc Id: XM_057301334   ⟹   XP_057157317
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v212102,526,787 - 102,588,423 (-)NCBI
NHGRI_mPanPan12A102,530,752 - 102,592,381 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_008950624   ⟸   XM_008952376
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BST8 (UniProtKB/TrEMBL),   A0A2R9BJ30 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034808583   ⟸   XM_034952692
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BST8 (UniProtKB/TrEMBL),   A0A2R9BJ30 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034808582   ⟸   XM_034952691
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BST8 (UniProtKB/TrEMBL),   A0A2R9BJ30 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034808585   ⟸   XM_034952694
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BST8 (UniProtKB/TrEMBL),   A0A2R9BJ30 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000029674   ⟸   ENSPPAT00000052524
RefSeq Acc Id: ENSPPAP00000029671   ⟸   ENSPPAT00000052521
RefSeq Acc Id: ENSPPAP00000029677   ⟸   ENSPPAT00000052527
RefSeq Acc Id: XP_054964152   ⟸   XM_055108177
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BST8 (UniProtKB/TrEMBL),   A0A2R9BJ30 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054964153   ⟸   XM_055108178
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BST8 (UniProtKB/TrEMBL),   A0A2R9BJ30 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_057157317   ⟸   XM_057301334
- Peptide Label: isoform X2
Protein Domains
SEP   UBX


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000037849 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000052521.1 UniProtKB/TrEMBL
  ENSPPAT00000052524.1 UniProtKB/TrEMBL
  ENSPPAT00000052527.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.420.210 UniProtKB/TrEMBL
InterPro NSFL1C_SEP_dom_sf UniProtKB/TrEMBL
  SEP_domain UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
  UBX_dom UniProtKB/TrEMBL
KEGG Report pps:100992605 UniProtKB/TrEMBL
NCBI Gene UBXN2A ENTREZGENE
PANTHER UBX DOMAIN CONTAINING PROTEIN UniProtKB/TrEMBL
  UBX DOMAIN-CONTAINING PROTEIN 2A UniProtKB/TrEMBL
Pfam SEP UniProtKB/TrEMBL
  UBX UniProtKB/TrEMBL
PROSITE SEP UniProtKB/TrEMBL
  UBX UniProtKB/TrEMBL
SMART SEP UniProtKB/TrEMBL
  UBX UniProtKB/TrEMBL
Superfamily-SCOP SSF102848 UniProtKB/TrEMBL
  SSF54236 UniProtKB/TrEMBL
UniProt A0A2R9BJ30 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BMN2_PANPA UniProtKB/TrEMBL
  A0A2R9BST8 ENTREZGENE, UniProtKB/TrEMBL