CDC20B (cell division cycle 20B) - Rat Genome Database

Name: CDC20B
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: CDC20B (cell division cycle 20B) Pan paniscus

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Symbol:

CDC20B

Name:

cell division cycle 20B

RGD ID:

11935970

Description:

ENCODES a protein that exhibits anaphase-promoting complex binding (inferred); ubiquitin ligase activator activity (inferred); ubiquitin-protein transferase activator activity (inferred); INVOLVED IN anaphase-promoting complex-dependent catabolic process (inferred); de novo centriole assembly (inferred); positive regulation of anaphase-promoting complex-dependent catabolic process (inferred); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN anaphase-promoting complex (inferred); deuterosome (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

cell division cycle 20 homolog B; cell division cycle protein 20 homolog B

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	58,767,265 - 58,829,371 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	56,920,913 - 56,982,996 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	58,856,370 - 58,918,463 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	60,478,977 - 60,538,264 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	60,478,977 - 60,538,264 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Neurodevelopmental Disorders (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

anaphase-promoting complex-dependent catabolic process (IEA)

de novo centriole assembly (IEA)

positive regulation of anaphase-promoting complex-dependent catabolic process (IEA)

Cellular Component

anaphase-promoting complex (IEA)

deuterosome (IEA)

Molecular Function

anaphase-promoting complex binding (IEA)

protein binding (ISO)

ubiquitin ligase activator activity (IEA)

ubiquitin-protein transferase activator activity (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

CDC20B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	58,767,265 - 58,829,371 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	56,920,913 - 56,982,996 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	58,856,370 - 58,918,463 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	60,478,977 - 60,538,264 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	60,478,977 - 60,538,264 (+)	Ensembl	panpan1.1		panPan2

CDC20B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	55,112,971 - 55,173,177 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	55,112,971 - 55,173,177 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	54,408,799 - 54,469,005 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	54,444,580 - 54,504,760 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	5	51,361,686 - 51,421,844 (-)	NCBI		Celera
Cytogenetic Map	5	q11.2	NCBI
HuRef	5	51,381,983 - 51,442,171 (-)	NCBI		HuRef
CHM1_1	5	54,412,293 - 54,472,491 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	55,940,297 - 56,000,463 (-)	NCBI		T2T-CHM13v2.0

Cdc20b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	113,171,514 - 113,257,553 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	113,171,645 - 113,227,729 (+)	Ensembl		GRCm39 Ensembl
GRCm38	13	113,034,975 - 113,121,019 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	113,035,111 - 113,091,195 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	113,844,876 - 113,881,343 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	114,175,546 - 114,212,013 (+)	NCBI		MGSCv36	mm8
Celera	13	117,372,711 - 117,401,874 (+)	NCBI		Celera
Cytogenetic Map	13	D2.2	NCBI
cM Map	13	63.93	NCBI

Cdc20b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	2	44,688,349 - 44,738,056 (+)	NCBI	mRatBN7.2	mRatBN7.2
Rnor_6.0	2	44,916,806 - 44,947,860 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	2	63,953,314 - 64,002,072 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	44,435,662 - 44,484,469 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	2	40,462,676 - 40,511,461 (+)	NCBI		Celera
Cytogenetic Map	2	q14	NCBI

Cdc20b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955446	12,494,735 - 12,553,130 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955446	12,494,176 - 12,551,397 (+)	NCBI	ChiLan1.0	ChiLan1.0

CDC20B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	42,501,365 - 42,547,336 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	42,502,471 - 42,544,841 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	39,546,989 - 39,592,913 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	42,960,120 - 43,009,376 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	42,961,226 - 43,028,045 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	40,030,611 - 40,072,137 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	40,840,823 - 40,889,769 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	41,663,376 - 41,712,698 (-)	NCBI		UU_Cfam_GSD_1.0

Cdc20b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	203,656,675 - 203,704,624 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936480	12,593,216 - 12,640,661 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936480	12,593,216 - 12,640,661 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CDC20B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	34,294,272 - 34,349,242 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	16	34,294,486 - 34,354,588 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

CDC20B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	51,349,486 - 51,408,437 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	4	51,351,574 - 51,406,488 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666049	219,601 - 275,784 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cdc20b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624759	4,109,203 - 4,176,824 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624759	4,112,012 - 4,174,838 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003827360	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003827361	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008952727	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_004671560	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000057355 ⟹ ENSPPAP00000034472

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	5	60,478,977 - 60,538,264 (+)	Ensembl

Ensembl Acc Id:

ENSPPAT00000057358 ⟹ ENSPPAP00000034475

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	5	60,478,977 - 60,538,264 (+)	Ensembl

RefSeq Acc Id:

XM_003827360 ⟹ XP_003827408

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	4	58,767,265 - 58,829,371 (+)	NCBI
NHGRI_mPanPan1	5	56,920,913 - 56,982,996 (+)	NCBI
Mhudiblu_PPA_v0	5	58,856,370 - 58,918,463 (+)	NCBI
PanPan1.1	5	60,478,977 - 60,538,264 (+)	NCBI

Sequence:

show sequence

GCAGCGGCGGTGGGAGGAGTGGGGGACCTGGAGGGAGGTGGTGAAATAGAATGGTCCTGGGGGA
CGGGACTCCAGGGGTTTGACGATTGGGCGTCAAGACTGACTTAGACCTGGGAAGAAAACCAGAG
GCAGTCGAGCAGAGAGGCCAAACGCCAGGCAGGGCGAAGTCAGCCGGAGATGGACTGGAAACTG
GAGCGCACCGCGCCTCGGAGGGTCCGCACGGAAGAGGAGGTGCTGTGGGAAAGTATCATGCGTG
TGCTCTCCAAAGACTTGAAGCAGAAGAGAAGTCAAGACTCCGCCAACGTACTCGATTCAGTTAA
TGCTACGTATTCTGACTTTAAGAGCAACTTTGCGAAGAGGCTGTCTGCAGAGGTTCCTGTTGCG
AGTAGCCCCATTACCACAAGGTGGCAGCAAAGTCAAACTAGGGCTCTGTCCTCTGATTCCTCTG
GGGAAGAGCAGTCAACCACCTACCTCCCAGAAGCTTCCGGATCAGTGCTGAAGACACCGCCTGA
GAAAGAGACCTTGACTCTAGAATCCTGCAAAGAACAACTGAAGACCCCCAGCAAAGGAATTTCT
GAAACAAGTAACTCTGCTCTCCGTTTTTGCAAGGCACCTCATGCAATGGACAAAGACTGGAAAG
AAAGTGTTGCCTCAAAAGGGCAGAAATGCCTAAAACAACTCTTTGTAACCCAGAACGTGGTTCA
GCAGGCTAATGGAAAAATGCAGCTCTGTGAGCAATCCCAATGTGTTTGGAAAGGCTGCAAAGAT
GGAGTCAGAGATGAATCCTTCCATCTTAAAAGGTCTGGTGATATAAACGATTCCATACTCCAAC
CAGAGGTGAAGATTCATATTACTGGTCTTCGAAATGACTACTATCTGAATATCCTAGATTGGAG
TTTTCAGAATCTTGTTGCCATAGCCCTGGGCTCTGCTGTATACATCTGGAATGGGGAGAACCAC
AATGGGATTGAAAACATAGACTTAAGTCTCACTTGTAACTATATCTCTTCTGTGTCCTGGATAA
AAGAGGGAACTTGCCTGGCAGTTGGCACCAGCGAGGGAGAAGTGCAATTATGGGATGTGGTAAC
TAAAAAGCGGCTGAGAAATATGCTTGGTCATTTGTCAGTAGTTGGGGCTCTGAGCTGGAATCAC
TTTATCCTCAGCAGTGGGTCAAGACTGGGGCGTGTTTATCATCACGATGTTCGGGTAGCCCAGC
ATCATGTTGGAACACTTCGCCACAAGCAAGCTGTGTGTGCTCTGAAGTGGTCACCGGATGGCAG
GCTGCTTTCCAGTGGCTGCAGTGATGGACTGCTGACAATATGGCCCCACGATCCAGGTGCCAGT
GCACAGGGCCAGCCGCTGAAAGTCATACCCCAGTCTACGGCAGTCAAGGCCATGGATTGGTGTC
CCTGGCAGTCTGGGGTCCTTGCCATTGGAGGAGGAATGAAGGATGGACGCTTACACATCTTGGA
TATAAATGCTGGGAAGAGCATCCAGACCCCAAGCACAAACTCACAGATTTGTTCCTTAATCTGG
CTACCTAAGACAAAGGAGATTGCAACTGGCCAAGGTACTCCCAAGAATGATGTGACTGTGTGGA
CCTGTCCCACTGTGTCCAGGTCAGGCCACAGGGGCAGAGTGCTGCACCTGGCTTTGAGTCCAGA
CCAGACCCAGGTGTTTTCTGCTGCAGCTGATGGGACGGCCTCTGTATGGAATTGCTACTAGCAC
CCAGCCCCTCTAGGTTTCAGTTTCCTTATTTCTAAGTGAAGATGATGATGTTGGCTATGTCTTC
TCCATGGGGTTTTTATGAGTATCAAACAAGTTGAAATACTCTTCTTGATGTGAATGCCTGTTCT
CCTGTTCTTCTTTTGCAGATTGCTTTACTTGCTCTGCTTCCCAGAGATCCGCTTCTTTTCTTCT
CTGCTTTCTTCTTTCTGCCCCTCTTCCTCCCCCTCCTCTTCTTCCTCCCATTCTTACCCCTTTC
TAGAGATTCATTTTCACTACTTTATTCAGAATAACATCTATAGCAAAGATTTCTACTTCTTTCC
CGTATGACTTTTCTCCCCAGCTCCAAACCTCATATTTCTGATTGCCTCAGGATAGTTCCCTTTT
GACATACTTTCCTGTCTTTAGCTCAATCTCAACACATTGAAAACACAACTCATTCACTTGAAAA
ACACTTATTAAAATCTCACTATATGCTAGGCAGTATGTTAAGCATGCATATTGCTCTCTCTAAA
AATCAGTTCTGTAGGAATCCCTTTCCCCTCCTGATGGTCTCATCCTTATCCTGGTCTCCCACTC
AGGGAACCTCCTGATTATTCTGCTCTGTGCTTCCTCAGTTCACCCTTTGCTGTCTTTTCTTTTG
CTTCACCTAGTCACATCCTGTGTGCCTGACAGCCAGTCTGCTGTAATTGTCTTAGAACTGATCC
TCTTGACTCCACACCACTGCTAGGTTGAACATCTAAAAGTCCTGTGCTGATCCTCTCAGTCCCC
TGCTCATCAACTCTCAAGGACAACCTATTACCAAACACCTTTGACCTCAACCTCTGGAGTTCTC
AGCCCAGGACTGGAAGTTAGGAGATCTGTTCTTGCCTTGGCTCTGCCATAAATACACCCTGTAA
CCTTGGATGTGTTGCAACATCTGCAAGGATAGGAATTTGATCACTGCTAAGGTTCCTTCAAACT
TGATCAGTTCGCTGTTCTGTCTTTTGAATGTTAATTCCCATTCATCTCCTATATTAAGACTTTG
GCTAAGTCTTGTGATTTCTTGCCTTATTGGAGCTTTTCTTCTAATCTGAATTCTTGCTTCTCTC
TCCTTTTCCTTTACACACCCACACAAGTCCTAACCTCTCCAGGAAGTGTTTTGAAATTATGTTA
CCTGGGTTTGAGTTCTTGGCATTAGCCTGTATCATCTATTTGGTATTATTATACTATTATAGCT
GTTTAAAAAAATCTTTTATTACTGTTTG

hide sequence

RefSeq Acc Id:

XM_003827361 ⟹ XP_003827409

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	4	58,767,265 - 58,829,371 (+)	NCBI
NHGRI_mPanPan1	5	56,920,913 - 56,982,996 (+)	NCBI
Mhudiblu_PPA_v0	5	58,856,370 - 58,918,463 (+)	NCBI
PanPan1.1	5	60,478,977 - 60,538,264 (+)	NCBI

Sequence:

show sequence

GCAGCGGCGGTGGGAGGAGTGGGGGACCTGGAGGGAGGTGGTGAAATAGAATGGTCCTGGGGGA
CGGGACTCCAGGGGTTTGACGATTGGGCGTCAAGACTGACTTAGACCTGGGAAGAAAACCAGAG
GCAGTCGAGCAGAGAGGCCAAACGCCAGGCAGGGCGAAGTCAGCCGGAGATGGACTGGAAACTG
GAGCGCACCGCGCCTCGGAGGGTCCGCACGGAAGAGGAGGTGCTGTGGGAAAGTATCATGCGTG
TGCTCTCCAAAGACTTGAAGCAGAAGAGAAGTCAAGACTCCGCCAACGTACTCGATTCAGTTAA
TGCTACGTATTCTGACTTTAAGAGCAACTTTGCGAAGAGGCTGTCTGCAGAGGTTCCTGTTGCG
AGTAGCCCCATTACCACAAGGTGGCAGCAAAGTCAAACTAGGGCTCTGTCCTCTGATTCCTCTG
GGGAAGAGCAGTCAACCACCTACCTCCCAGAAGCTTCCGGATCAGTGCTGAAGACACCGCCTGA
GAAAGAGACCTTGACTCTAGAATCCTGCAAAGAACAACTGAAGACCCCCAGCAAAGGAATTTCT
GAAACAAGTAACTCTGCTCTCCGTTTTTGCAAGGCACCTCATGCAATGGACAAAGACTGGAAAG
AAAGTGTTGCCTCAAAAGGGCAGAAATGCCTAAAACAACTCTTTGTAACCCAGAACGTGGTTCA
GCAGGCTAATGGAAAAATGCAGCTCTGTGAGCAATCCCAATGTGTTTGGAAAGGCTGCAAAGAT
GGAGTCAGAGATGAATCCTTCCATCTTAAAAGGTCTGGTGATATAAACGATTCCATACTCCAAC
CAGAGGTGAAGATTCATATTACTGGTCTTCGAAATGACTACTATCTGAATATCCTAGATTGGAG
TTTTCAGAATCTTGTTGCCATAGCCCTGGGCTCTGCTGTATACATCTGGAATGGGGAGAACCAC
AATGGGATTGAAAACATAGACTTAAGTCTCACTTGTAACTATATCTCTTCTGTGTCCTGGATAA
AAGAGGGAACTTGCCTGGCAGTTGGCACCAGCGAGGGAGAAGTGCAATTATGGGATGTGGTAAC
TAAAAAGCGGCTGAGAAATATGCTTGGTCATTTGTCAGTAGTTGGGGCTCTGAGCTGGAATCAC
TTTATCCTCAGCAGTGGGTCAAGACTGGGGCGTGTTTATCATCACGATGTTCGGGTAGCCCAGC
ATCATGTTGGAACACTTCGCCACAAGCAAGCTGTGTGTGCTCTGAAGTGGTCACCGGATGGCAG
GCTGCTTTCCAGTGGCTGCAGTGATGGACTGCTGACAATATGGCCCCACGATCCAGGTGCCAGT
GCACAGGGCCAGCCGCTGAAAGTCATACCCCAGTCTACGGCAGTCAAGATTTGTTCCTTAATCT
GGCTACCTAAGACAAAGGAGATTGCAACTGGCCAAGGTACTCCCAAGAATGATGTGACTGTGTG
GACCTGTCCCACTGTGTCCAGGTCAGGTGGGTTTTTTGGCCACAGGGGCAGAGTGCTGCACCTG
GCTTTGAGTCCAGACCAGACCCAGGTGTTTTCTGCTGCAGCTGATGGGACGGCCTCTGTATGGA
ATTGCTACTAGCACCCAGCCCCTCTAGGTTTCAGTTTCCTTATTTCTAAGTGAAGATGATGATG
TTGGCTATGTCTTCTCCATGGGGTTTTTATGAGTATCAAACAAGTTGAAATACTCTTCTTGATG
TGAATGCCTGTTCTCCTGTTCTTCTTTTGCAGATTGCTTTACTTGCTCTGCTTCCCAGAGATCC
GCTTCTTTTCTTCTCTGCTTTCTTCTTTCTGCCCCTCTTCCTCCCCCTCCTCTTCTTCCTCCCA
TTCTTACCCCTTTCTAGAGATTCATTTTCACTACTTTATTCAGAATAACATCTATAGCAAAGAT
TTCTACTTCTTTCCCGTATGACTTTTCTCCCCAGCTCCAAACCTCATATTTCTGATTGCCTCAG
GATAGTTCCCTTTTGACATACTTTCCTGTCTTTAGCTCAATCTCAACACATTGAAAACACAACT
CATTCACTTGAAAAACACTTATTAAAATCTCACTATATGCTAGGCAGTATGTTAAGCATGCATA
TTGCTCTCTCTAAAAATCAGTTCTGTAGGAATCCCTTTCCCCTCCTGATGGTCTCATCCTTATC
CTGGTCTCCCACTCAGGGAACCTCCTGATTATTCTGCTCTGTGCTTCCTCAGTTCACCCTTTGC
TGTCTTTTCTTTTGCTTCACCTAGTCACATCCTGTGTGCCTGACAGCCAGTCTGCTGTAATTGT
CTTAGAACTGATCCTCTTGACTCCACACCACTGCTAGGTTGAACATCTAAAAGTCCTGTGCTGA
TCCTCTCAGTCCCCTGCTCATCAACTCTCAAGGACAACCTATTACCAAACACCTTTGACCTCAA
CCTCTGGAGTTCTCAGCCCAGGACTGGAAGTTAGGAGATCTGTTCTTGCCTTGGCTCTGCCATA
AATACACCCTGTAACCTTGGATGTGTTGCAACATCTGCAAGGATAGGAATTTGATCACTGCTAA
GGTTCCTTCAAACTTGATCAGTTCGCTGTTCTGTCTTTTGAATGTTAATTCCCATTCATCTCCT
ATATTAAGACTTTGGCTAAGTCTTGTGATTTCTTGCCTTATTGGAGCTTTTCTTCTAATCTGAA
TTCTTGCTTCTCTCTCCTTTTCCTTTACACACCCACACAAGTCCTAACCTCTCCAGGAAGTGTT
TTGAAATTATGTTACCTGGGTTTGAGTTCTTGGCATTAGCCTGTATCATCTATTTGGTATTATT
ATACTATTATAGCTGTTTAAAAAAATCTTTTATTACTGTTTG

hide sequence

RefSeq Acc Id:

XM_008952727 ⟹ XP_008950975

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	4	58,767,265 - 58,829,371 (+)	NCBI
NHGRI_mPanPan1	5	56,920,913 - 56,982,996 (+)	NCBI
Mhudiblu_PPA_v0	5	58,856,370 - 58,918,463 (+)	NCBI
PanPan1.1	5	60,478,977 - 60,538,264 (+)	NCBI

Sequence:

show sequence

GCAGCGGCGGTGGGAGGAGTGGGGGACCTGGAGGGAGGTGGTGAAATAGAATGGTCCTGGGGGA
CGGGACTCCAGGGGTTTGACGATTGGGCGTCAAGACTGACTTAGACCTGGGAAGAAAACCAGAG
GCAGTCGAGCAGAGAGGCCAAACGCCAGGCAGGGCGAAGTCAGCCGGAGATGGACTGGAAACTG
GAGCGCACCGCGCCTCGGAGGGTCCGCACGGAAGAGGAGGTGCTGTGGGAAAGTATCATGCGTG
TGCTCTCCAAAGACTTGAAGCAGAAGAGAAGTCAAGACTCCGCCAACGTACTCGATTCAGTTAA
TGCTACGTATTCTGACTTTAAGAGCAACTTTGCGAAGAGGCTGTCTGCAGAGGTTCCTGTTGCG
AGTAGCCCCATTACCACAAGGTGGCAGCAAAGTCAAACTAGGGCTCTGTCCTCTGATTCCTCTG
GGGAAGAGCAGTCAACCACCTACCTCCCAGAAGCTTCCGGATCAGTGCTGAAGACACCGCCTGA
GAAAGAGACCTTGACTCTAGAATCCTGCAAAGAACAACTGAAGACCCCCAGCAAAGGAATTTCT
GAAACAAGTAACTCTGCTCTCCGTTTTTGCAAGGCACCTCATGCAATGGACAAAGACTGGAAAG
AAAGTGTTGCCTCAAAAGGGCAGAAATGCCTAAAACAACTCTTTGTAACCCAGAACGTGGTTCA
GCAGGCTAATGGAAAAATGCAGCTCTGTGAGCAATCCCAATGTGTTTGGAAAGGCTGCAAAGAT
GGAGTCAGAGATGAATCCTTCCATCTTAAAAGGTCTGGTGATATAAACGATTCCATACTCCAAC
CAGAGGTGAAGATTCATATTACTGGTCTTCGAAATGACTACTATCTGAATATCCTAGATTGGAG
TTTTCAGAATCTTGTTGCCATAGCCCTGGGCTCTGCTGTATACATCTGGAATGGGGAGAACCAC
AATGGGATTGAAAACATAGACTTAAGTCTCACTTGTAACTATATCTCTTCTGTGTCCTGGATAA
AAGAGGGAACTTGCCTGGCAGTTGGCACCAGCGAGGGAGAAGTGCAATTATGGGATGTGGTAAC
TAAAAAGCGGCTGAGAAATATGCTTGGTCATTTGTCAGTAGTTGGGGCTCTGAGCTGGAATCAC
TTTATCCTCAGCAGTGGGTCAAGACTGGGGCGTGTTTATCATCACGATGTTCGGGTAGCCCAGC
ATCATGTTGGAACACTTCGCCACAAGCAAGCTGTGTGTGCTCTGAAGTGGTCACCGGATGGCAG
GCTGCTTTCCAGTGGCTGCAGTGATGGACTGCTGACAATATGGCCCCACGATCCAGGTGCCAGT
GCACAGGGCCAGCCGCTGAAAGTCATACCCCAGTCTACGGCAGTCAAGGCCATGGATTGGTGTC
CCTGGCAGTCTGGGGTCCTTGCCATTGGAGGAGGAATGAAGGATGGACGCTTACACATCTTGGA
TATAAATGCTGGGAAGAGCATCCAGACCCCAAGCACAAACTCACAGATTTGTTCCTTAATCTGG
CTACCTAAGACAAAGGAGATTGCAACTGGCCAAGGTACTCCCAAGAATGATGTGACTGTGTGGA
CCTGTCCCACTGTGTCCAGGTCAGGTGGGTTTTTTGGCCACAGGGGCAGAGTGCTGCACCTGGC
TTTGAGTCCAGACCAGACCCAGGTGTTTTCTGCTGCAGCTGATGGGACGGCCTCTGTATGGAAT
TGCTACTAGCACCCAGCCCCTCTAGGTTTCAGTTTCCTTATTTCTAAGTGAAGATGATGATGTT
GGCTATGTCTTCTCCATGGGGTTTTTATGAGTATCAAACAAGTTGAAATACTCTTCTTGATGTG
AATGCCTGTTCTCCTGTTCTTCTTTTGCAGATTGCTTTACTTGCTCTGCTTCCCAGAGATCCGC
TTCTTTTCTTCTCTGCTTTCTTCTTTCTGCCCCTCTTCCTCCCCCTCCTCTTCTTCCTCCCATT
CTTACCCCTTTCTAGAGATTCATTTTCACTACTTTATTCAGAATAACATCTATAGCAAAGATTT
CTACTTCTTTCCCGTATGACTTTTCTCCCCAGCTCCAAACCTCATATTTCTGATTGCCTCAGGA
TAGTTCCCTTTTGACATACTTTCCTGTCTTTAGCTCAATCTCAACACATTGAAAACACAACTCA
TTCACTTGAAAAACACTTATTAAAATCTCACTATATGCTAGGCAGTATGTTAAGCATGCATATT
GCTCTCTCTAAAAATCAGTTCTGTAGGAATCCCTTTCCCCTCCTGATGGTCTCATCCTTATCCT
GGTCTCCCACTCAGGGAACCTCCTGATTATTCTGCTCTGTGCTTCCTCAGTTCACCCTTTGCTG
TCTTTTCTTTTGCTTCACCTAGTCACATCCTGTGTGCCTGACAGCCAGTCTGCTGTAATTGTCT
TAGAACTGATCCTCTTGACTCCACACCACTGCTAGGTTGAACATCTAAAAGTCCTGTGCTGATC
CTCTCAGTCCCCTGCTCATCAACTCTCAAGGACAACCTATTACCAAACACCTTTGACCTCAACC
TCTGGAGTTCTCAGCCCAGGACTGGAAGTTAGGAGATCTGTTCTTGCCTTGGCTCTGCCATAAA
TACACCCTGTAACCTTGGATGTGTTGCAACATCTGCAAGGATAGGAATTTGATCACTGCTAAGG
TTCCTTCAAACTTGATCAGTTCGCTGTTCTGTCTTTTGAATGTTAATTCCCATTCATCTCCTAT
ATTAAGACTTTGGCTAAGTCTTGTGATTTCTTGCCTTATTGGAGCTTTTCTTCTAATCTGAATT
CTTGCTTCTCTCTCCTTTTCCTTTACACACCCACACAAGTCCTAACCTCTCCAGGAAGTGTTTT
GAAATTATGTTACCTGGGTTTGAGTTCTTGGCATTAGCCTGTATCATCTATTTGGTATTATTAT
ACTATTATAGCTGTTTAAAAAAATCTTTTATTACTGTTTG

hide sequence

Protein Sequences


Protein RefSeqs	XP_003827408	(Get FASTA)	NCBI Sequence Viewer
	XP_003827409	(Get FASTA)	NCBI Sequence Viewer
	XP_008950975	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000034472.1
	ENSPPAP00000034475.1

RefSeq Acc Id:	XP_008950975 ⟸ XM_008952727
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9BXR3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDWKLERTAPRRVRTEEEVLWESIMRVLSKDLKQKRSQDSANVLDSVNATYSDFKSNFAKRLSA EVPVASSPITTRWQQSQTRALSSDSSGEEQSTTYLPEASGSVLKTPPEKETLTLESCKEQLKTP SKGISETSNSALRFCKAPHAMDKDWKESVASKGQKCLKQLFVTQNVVQQANGKMQLCEQSQCVW KGCKDGVRDESFHLKRSGDINDSILQPEVKIHITGLRNDYYLNILDWSFQNLVAIALGSAVYIW NGENHNGIENIDLSLTCNYISSVSWIKEGTCLAVGTSEGEVQLWDVVTKKRLRNMLGHLSVVGA LSWNHFILSSGSRLGRVYHHDVRVAQHHVGTLRHKQAVCALKWSPDGRLLSSGCSDGLLTIWPH DPGASAQGQPLKVIPQSTAVKAMDWCPWQSGVLAIGGGMKDGRLHILDINAGKSIQTPSTNSQI CSLIWLPKTKEIATGQGTPKNDVTVWTCPTVSRSGGFFGHRGRVLHLALSPDQTQVFSAAADGT ASVWNCY hide sequence

RefSeq Acc Id:	XP_003827408 ⟸ XM_003827360
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9BXR3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDWKLERTAPRRVRTEEEVLWESIMRVLSKDLKQKRSQDSANVLDSVNATYSDFKSNFAKRLSA EVPVASSPITTRWQQSQTRALSSDSSGEEQSTTYLPEASGSVLKTPPEKETLTLESCKEQLKTP SKGISETSNSALRFCKAPHAMDKDWKESVASKGQKCLKQLFVTQNVVQQANGKMQLCEQSQCVW KGCKDGVRDESFHLKRSGDINDSILQPEVKIHITGLRNDYYLNILDWSFQNLVAIALGSAVYIW NGENHNGIENIDLSLTCNYISSVSWIKEGTCLAVGTSEGEVQLWDVVTKKRLRNMLGHLSVVGA LSWNHFILSSGSRLGRVYHHDVRVAQHHVGTLRHKQAVCALKWSPDGRLLSSGCSDGLLTIWPH DPGASAQGQPLKVIPQSTAVKAMDWCPWQSGVLAIGGGMKDGRLHILDINAGKSIQTPSTNSQI CSLIWLPKTKEIATGQGTPKNDVTVWTCPTVSRSGHRGRVLHLALSPDQTQVFSAAADGTASVW NCY hide sequence

RefSeq Acc Id:	XP_003827409 ⟸ XM_003827361
- Peptide Label:	isoform X3
- UniProtKB:	A0A2R9C135 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDWKLERTAPRRVRTEEEVLWESIMRVLSKDLKQKRSQDSANVLDSVNATYSDFKSNFAKRLSA EVPVASSPITTRWQQSQTRALSSDSSGEEQSTTYLPEASGSVLKTPPEKETLTLESCKEQLKTP SKGISETSNSALRFCKAPHAMDKDWKESVASKGQKCLKQLFVTQNVVQQANGKMQLCEQSQCVW KGCKDGVRDESFHLKRSGDINDSILQPEVKIHITGLRNDYYLNILDWSFQNLVAIALGSAVYIW NGENHNGIENIDLSLTCNYISSVSWIKEGTCLAVGTSEGEVQLWDVVTKKRLRNMLGHLSVVGA LSWNHFILSSGSRLGRVYHHDVRVAQHHVGTLRHKQAVCALKWSPDGRLLSSGCSDGLLTIWPH DPGASAQGQPLKVIPQSTAVKICSLIWLPKTKEIATGQGTPKNDVTVWTCPTVSRSGGFFGHRG RVLHLALSPDQTQVFSAAADGTASVWNCY hide sequence

Ensembl Acc Id:

ENSPPAP00000034472 ⟸ ENSPPAT00000057355

Ensembl Acc Id:

ENSPPAP00000034475 ⟸ ENSPPAT00000057358

Protein Domains

Anaphase-promoting complex subunit 4-like WD40

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000040090	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000057355.1	UniProtKB/TrEMBL
	ENSPPAT00000057358.1	UniProtKB/TrEMBL
Gene3D-CATH	2.130.10.10	UniProtKB/TrEMBL
InterPro	Apc4-like_WD40_dom	UniProtKB/TrEMBL
	Cdc20/Fizzy	UniProtKB/TrEMBL
	WD40/YVTN_repeat-like_dom_sf	UniProtKB/TrEMBL
	WD40_repeat	UniProtKB/TrEMBL
	WD40_repeat_CS	UniProtKB/TrEMBL
	WD40_repeat_dom_sf	UniProtKB/TrEMBL
NCBI Gene	CDC20B	ENTREZGENE
PANTHER	CELL DIVISION CYCLE PROTEIN 20 HOMOLOG B	UniProtKB/TrEMBL
	PTHR19918	UniProtKB/TrEMBL
Pfam	ANAPC4_WD40	UniProtKB/TrEMBL
	WD40	UniProtKB/TrEMBL
PROSITE	WD_REPEATS_1	UniProtKB/TrEMBL
	WD_REPEATS_2	UniProtKB/TrEMBL
	WD_REPEATS_REGION	UniProtKB/TrEMBL
SMART	WD40	UniProtKB/TrEMBL
Superfamily-SCOP	SSF50978	UniProtKB/TrEMBL
UniProt	A0A2R9BXR3	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9C135	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar