CDC20B (cell division cycle 20B) - Rat Genome Database

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Gene: CDC20B (cell division cycle 20B) Sus scrofa
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Symbol: CDC20B
Name: cell division cycle 20B
RGD ID: 14280245
Description: ENCODES a protein that exhibits anaphase-promoting complex binding (inferred); ubiquitin-protein transferase activator activity (inferred); INVOLVED IN de novo centriole assembly (inferred); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN deuterosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cell division cycle 20 homolog B; cell division cycle protein 20 homolog B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1634,294,272 - 34,349,242 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11634,294,486 - 34,354,588 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CDC20B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1634,294,272 - 34,349,242 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11634,294,486 - 34,354,588 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CDC20B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38555,112,971 - 55,173,177 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl555,112,971 - 55,173,177 (-)EnsemblGRCh38hg38GRCh38
GRCh37554,408,799 - 54,469,005 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36554,444,580 - 54,504,760 (-)NCBINCBI36Build 36hg18NCBI36
Celera551,361,686 - 51,421,844 (-)NCBICelera
Cytogenetic Map5q11.2NCBI
HuRef551,381,983 - 51,442,171 (-)NCBIHuRef
CHM1_1554,412,293 - 54,472,491 (-)NCBICHM1_1
T2T-CHM13v2.0555,940,297 - 56,000,463 (-)NCBIT2T-CHM13v2.0
Cdc20b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913113,171,514 - 113,257,553 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13113,171,645 - 113,227,729 (+)EnsemblGRCm39 Ensembl
GRCm3813113,034,975 - 113,121,019 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13113,035,111 - 113,091,195 (+)EnsemblGRCm38mm10GRCm38
MGSCv3713113,844,876 - 113,881,343 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613114,175,546 - 114,212,013 (+)NCBIMGSCv36mm8
Celera13117,372,711 - 117,401,874 (+)NCBICelera
Cytogenetic Map13D2.2NCBI
cM Map1363.93NCBI
Cdc20b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2244,688,349 - 44,738,056 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0244,916,806 - 44,947,860 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0263,953,314 - 64,002,072 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4244,435,662 - 44,484,469 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera240,462,676 - 40,511,461 (+)NCBICelera
Cytogenetic Map2q14NCBI
Cdc20b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544612,494,735 - 12,553,130 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544612,494,176 - 12,551,397 (+)NCBIChiLan1.0ChiLan1.0
CDC20B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2458,767,265 - 58,829,371 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1556,920,913 - 56,982,996 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0558,856,370 - 58,918,463 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1560,478,977 - 60,538,264 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl560,478,977 - 60,538,264 (+)Ensemblpanpan1.1panPan2
CDC20B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1242,501,365 - 42,547,336 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl242,502,471 - 42,544,841 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha239,546,989 - 39,592,913 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0242,960,120 - 43,009,376 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl242,961,226 - 43,028,045 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1240,030,611 - 40,072,137 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0240,840,823 - 40,889,769 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0241,663,376 - 41,712,698 (-)NCBIUU_Cfam_GSD_1.0
Cdc20b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213203,656,675 - 203,704,624 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648012,593,216 - 12,640,661 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648012,593,216 - 12,640,661 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDC20B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1451,349,486 - 51,408,437 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl451,351,574 - 51,406,488 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666049219,601 - 275,784 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdc20b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247594,109,203 - 4,176,824 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247594,112,012 - 4,174,838 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CDC20B
1843 total Variants

Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021076691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSSCT00000073072   ⟹   ENSSSCP00000059646
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1634,294,272 - 34,349,242 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000089207   ⟹   ENSSSCP00000072529
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1634,294,272 - 34,349,242 (-)Ensembl
RefSeq Acc Id: XM_021076691   ⟹   XP_020932350
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11634,294,486 - 34,354,588 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020932350   ⟸   XM_021076691
- UniProtKB: A0A5G2R614 (UniProtKB/TrEMBL),   A0A8D0MZ78 (UniProtKB/TrEMBL),   A0A4X1SM74 (UniProtKB/TrEMBL),   A0A8D0LH96 (UniProtKB/TrEMBL),   A0A8D0SPP9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000072529   ⟸   ENSSSCT00000089207
Ensembl Acc Id: ENSSSCP00000059646   ⟸   ENSSSCT00000073072
Protein Domains
Anaphase-promoting complex subunit 4-like WD40


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000048484 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015020201 UniProtKB/TrEMBL
  ENSSSCG00025058603 UniProtKB/TrEMBL
  ENSSSCG00030071227 UniProtKB/TrEMBL
  ENSSSCG00040035684 UniProtKB/TrEMBL
  ENSSSCG00045006528 UniProtKB/TrEMBL
  ENSSSCG00050062856 UniProtKB/TrEMBL
  ENSSSCG00070002359 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000073072.2 UniProtKB/TrEMBL
  ENSSSCT00000089207 ENTREZGENE
  ENSSSCT00000089207.2 UniProtKB/TrEMBL
  ENSSSCT00015027618.1 UniProtKB/TrEMBL
  ENSSSCT00025080562.1 UniProtKB/TrEMBL
  ENSSSCT00030099829.1 UniProtKB/TrEMBL
  ENSSSCT00040048432.1 UniProtKB/TrEMBL
  ENSSSCT00045010950.1 UniProtKB/TrEMBL
  ENSSSCT00050085629.1 UniProtKB/TrEMBL
  ENSSSCT00070004411.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro Apc4_WD40_dom UniProtKB/TrEMBL
  Cdc20/Fizzy UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene CDC20B ENTREZGENE
PANTHER CELL DIVISION CYCLE PROTEIN 20 HOMOLOG B UniProtKB/TrEMBL
  PTHR19918 UniProtKB/TrEMBL
Pfam ANAPC4_WD40 UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PROSITE WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt A0A4X1SM74 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QMV6_PIG UniProtKB/TrEMBL
  A0A5G2R614 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0LH96 ENTREZGENE
  A0A8D0MZ78 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0SPP9 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:110655 ENTREZGENE