TRIM26 (tripartite motif containing 26) - Rat Genome Database

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Gene: TRIM26 (tripartite motif containing 26) Pan paniscus
Analyze
Symbol: TRIM26
Name: tripartite motif containing 26
RGD ID: 11762811
Description: INVOLVED IN innate immune response (ortholog); negative regulation of viral entry into host cell (ortholog); negative regulation of viral release from host cell (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: tripartite motif-containing protein 26
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1630,632,948 - 30,660,809 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl630,632,948 - 30,660,809 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0629,962,838 - 29,990,710 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)

Molecular Function

References

Genomics

Comparative Map Data
TRIM26
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1630,632,948 - 30,660,809 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl630,632,948 - 30,660,809 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0629,962,838 - 29,990,710 (-)NCBIMhudiblu_PPA_v0panPan3
TRIM26
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl630,184,455 - 30,213,427 (-)EnsemblGRCh38hg38GRCh38
GRCh38630,184,453 - 30,213,435 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37630,152,232 - 30,181,183 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36630,260,211 - 30,289,132 (-)NCBINCBI36hg18NCBI36
Build 34630,260,212 - 30,289,132NCBI
Celera631,750,448 - 31,779,361 (-)NCBI
Cytogenetic Map6p22.1NCBI
HuRef629,950,359 - 29,979,394 (-)NCBIHuRef
CHM1_1630,154,280 - 30,183,313 (-)NCBICHM1_1
Trim26
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391737,148,016 - 37,170,290 (+)NCBIGRCm39mm39
GRCm39 Ensembl1737,148,026 - 37,170,290 (+)Ensembl
GRCm381736,837,123 - 36,859,398 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1736,837,134 - 36,859,398 (+)EnsemblGRCm38mm10GRCm38
MGSCv371736,974,086 - 36,996,325 (+)NCBIGRCm37mm9NCBIm37
MGSCv361736,445,234 - 36,467,430 (+)NCBImm8
Celera1740,256,349 - 40,278,617 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1719.16NCBI
Trim26
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2201,708,297 - 1,731,176 (-)NCBI
Rnor_6.0 Ensembl202,201,683 - 2,224,463 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0202,201,685 - 2,224,481 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0204,239,932 - 4,248,755 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4201,802,458 - 1,811,283 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1201,802,469 - 1,811,281 (-)NCBI
Celera202,418,533 - 2,427,356 (-)NCBICelera
Cytogenetic Map20p12NCBI
Trim26
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955583303,081 - 325,560 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955583303,081 - 325,560 (-)NCBIChiLan1.0ChiLan1.0
Trim26
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494632,732,023 - 32,762,964 (-)NCBI
SpeTri2.0NW_004936723827,847 - 859,860 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIM26
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl722,756,345 - 22,780,174 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1722,757,794 - 22,767,662 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2724,795,848 - 24,819,779 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRIM26
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11742,284,454 - 42,312,150 (+)NCBI
ChlSab1.1 Ensembl1742,283,713 - 42,313,292 (+)Ensembl
Vero_WHO_p1.0NW_02366604429,844,053 - 29,873,853 (-)NCBI
Trim26
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475425,238,992 - 25,258,454 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000034924   ⟹   ENSPPAP00000012262
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl630,632,948 - 30,660,809 (-)Ensembl
RefSeq Acc Id: XM_003829748   ⟹   XP_003829796
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1630,632,948 - 30,660,809 (-)NCBI
Mhudiblu_PPA_v0629,962,842 - 29,990,710 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008955109   ⟹   XP_008953357
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1630,632,948 - 30,660,745 (-)NCBI
Mhudiblu_PPA_v0629,962,838 - 29,990,673 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008955110   ⟹   XP_008953358
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1630,632,948 - 30,660,745 (-)NCBI
Mhudiblu_PPA_v0629,962,838 - 29,990,709 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008955111   ⟹   XP_008953359
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1630,632,948 - 30,660,745 (-)NCBI
Mhudiblu_PPA_v0629,962,838 - 29,990,678 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034961681   ⟹   XP_034817572
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0629,962,842 - 29,990,710 (-)NCBI
RefSeq Acc Id: XM_034961682   ⟹   XP_034817573
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0629,962,838 - 29,990,710 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_003829796   ⟸   XM_003829748
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008953358   ⟸   XM_008955110
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008953359   ⟸   XM_008955111
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008953357   ⟸   XM_008955109
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_034817573   ⟸   XM_034961682
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034817572   ⟸   XM_034961681
- Peptide Label: isoform X1
RefSeq Acc Id: ENSPPAP00000012262   ⟸   ENSPPAT00000034924
Protein Domains
B box-type   B30.2/SPRY   RING-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000029319 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000012262 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000034924 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.920 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
InterPro B30.2/SPRY UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/TrEMBL
  Butyrophylin_SPRY UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/TrEMBL
  PRY UniProtKB/TrEMBL
  SPRY_dom UniProtKB/TrEMBL
  Znf_B-box UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
KEGG Report pps:100985403 UniProtKB/TrEMBL
NCBI Gene TRIM26 ENTREZGENE
Pfam PRY UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
  zf-B_box UniProtKB/TrEMBL
PRINTS BUTYPHLNCDUF UniProtKB/TrEMBL
PROSITE B302_SPRY UniProtKB/TrEMBL
  ZF_BBOX UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART BBOX UniProtKB/TrEMBL
  PRY UniProtKB/TrEMBL
  RING UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
Superfamily-SCOP SSF49899 UniProtKB/TrEMBL
UniProt A0A2R9A4N3_PANPA UniProtKB/TrEMBL