MARCHF6 (membrane associated ring-CH-type finger 6) - Rat Genome Database

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Gene: MARCHF6 (membrane associated ring-CH-type finger 6) Pan paniscus
Analyze
Symbol: MARCHF6
Name: membrane associated ring-CH-type finger 6
RGD ID: 11911567
Description: ENCODES a protein that exhibits enzyme binding (inferred); metal ion binding (inferred); transferase activity (inferred); INVOLVED IN ERAD pathway (inferred); proteasomal protein catabolic process (inferred); proteasome-mediated ubiquitin-dependent protein catabolic process (inferred); ASSOCIATED WITH familial adult myoclonic epilepsy 3 (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: E3 ubiquitin-protein ligase MARCH6; E3 ubiquitin-protein ligase MARCHF6; MARCH6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2410,594,867 - 10,681,923 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan158,748,938 - 8,834,711 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0510,666,978 - 10,753,050 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1510,524,958 - 10,608,046 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl510,524,958 - 10,608,046 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MARCHF6Bonobofamilial adult myoclonic epilepsy 3  ISORGD:13437168554872ClinVar Annotator: match by term: Epilepsy, familial adult myoclonic, 3ClinVarPMID:25741868
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MARCHF6Bonobofamilial adult myoclonic epilepsy 3  ISORGD:13437167240710 OMIM 


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MARCHF6BonoboERAD pathway involved_inIEAPANTHER:PTN000322028|PANTHER:PTN000322030150520179 TreeGrafterGO_REF:0000118
MARCHF6Bonoboproteasomal protein catabolic process involved_inIEAUniProtKB:O60337|ensembl:ENSP00000274140150520179 EnsemblGO_REF:0000107
MARCHF6Bonoboproteasome-mediated ubiquitin-dependent protein catabolic process involved_inIEAUniProtKB:O60337|ensembl:ENSP00000274140150520179 EnsemblGO_REF:0000107
MARCHF6Bonoboprotein K48-linked ubiquitination involved_inIEAUniProtKB:O60337|ensembl:ENSP00000274140150520179 EnsemblGO_REF:0000107
MARCHF6Bonoboprotein ubiquitination involved_inIEAUniProtKB:O60337|ensembl:ENSP00000274140150520179 EnsemblGO_REF:0000107

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MARCHF6Bonoboendoplasmic reticulum located_inIEAUniProtKB:O60337|ensembl:ENSP00000274140150520179 EnsemblGO_REF:0000107
MARCHF6Bonoboendoplasmic reticulum membrane located_inIEAPANTHER:PTN000322028|PANTHER:PTN000322030150520179 TreeGrafterGO_REF:0000118
MARCHF6Bonoboendoplasmic reticulum membrane located_inIEAUniProtKB:O60337|ensembl:ENSP00000274140150520179 EnsemblGO_REF:0000107
MARCHF6Bonobomembrane located_inIEAUniProtKB:O60337|ensembl:ENSP00000274140150520179 EnsemblGO_REF:0000107
MARCHF6Bonobomembrane located_inIEAUniProtKB-SubCell:SL-0162150520179 UniProtGO_REF:0000044
MARCHF6Bonobomembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043

Molecular Function
1 to 11 of 11 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MARCHF6Bonoboenzyme binding enablesIEAUniProtKB:O60337|ensembl:ENSP00000274140150520179 EnsemblGO_REF:0000107
MARCHF6Bonobometal ion binding enablesIEAUniProtKB-KW:KW-0479150520179 UniProtGO_REF:0000043
MARCHF6Bonoboprotein binding enablesISOUniProtKB:P41220-19068941 PMID:25766235IntActPMID:25766235
MARCHF6Bonoboprotein binding enablesISOUniProtKB:Q9UHX39068941 PMID:32296183IntActPMID:32296183
MARCHF6Bonobotransferase activity enablesIEAUniProtKB-KW:KW-0808150520179 UniProtGO_REF:0000043
MARCHF6Bonoboubiquitin conjugating enzyme binding enablesIEAUniProtKB:O60337|ensembl:ENSP00000274140150520179 EnsemblGO_REF:0000107
MARCHF6Bonoboubiquitin protein ligase activity enablesIEAUniProtKB:O60337|ensembl:ENSP00000274140150520179 EnsemblGO_REF:0000107
MARCHF6Bonoboubiquitin-protein transferase activity enablesIEAUniProtKB:O60337|ensembl:ENSP00000274140150520179 EnsemblGO_REF:0000107
MARCHF6Bonoboubiquitin-specific protease binding enablesIEAUniProtKB:O60337|ensembl:ENSP00000274140150520179 EnsemblGO_REF:0000107
MARCHF6Bonobozinc ion binding enablesIEAInterPro:IPR011016150520179 InterProGO_REF:0000002
MARCHF6Bonobozinc ion binding enablesIEAUniProtKB-KW:KW-0863150520179 UniProtGO_REF:0000043
1 to 11 of 11 rows

PMID:22301074   PMID:30032202  



MARCHF6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2410,594,867 - 10,681,923 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan158,748,938 - 8,834,711 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0510,666,978 - 10,753,050 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1510,524,958 - 10,608,046 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl510,524,958 - 10,608,046 (+)Ensemblpanpan1.1panPan2
MARCHF6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38510,353,695 - 10,440,388 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl510,353,695 - 10,440,388 (+)EnsemblGRCh38hg38GRCh38
GRCh37510,353,807 - 10,440,500 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36510,406,828 - 10,488,491 (+)NCBINCBI36Build 36hg18NCBI36
Build 34510,406,827 - 10,488,491NCBI
Celera510,391,947 - 10,473,622 (+)NCBICelera
Cytogenetic Map5p15.2NCBI
HuRef510,338,021 - 10,424,590 (+)NCBIHuRef
CHM1_1510,353,128 - 10,440,366 (+)NCBICHM1_1
T2T-CHM13v2.0510,292,877 - 10,379,523 (+)NCBIT2T-CHM13v2.0
Marchf6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391531,456,045 - 31,531,172 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1531,456,037 - 31,531,199 (-)EnsemblGRCm39 Ensembl
GRCm381531,455,899 - 31,531,082 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1531,455,891 - 31,531,053 (-)EnsemblGRCm38mm10GRCm38
MGSCv371531,385,654 - 31,460,792 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361531,400,488 - 31,475,626 (-)NCBIMGSCv36mm8
Celera1532,146,454 - 32,221,649 (-)NCBICelera
Cytogenetic Map15B2NCBI
cM Map1512.95NCBI
Marchf6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8284,166,570 - 84,243,817 (-)NCBIGRCr8
mRatBN7.2282,455,686 - 82,532,917 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl282,455,689 - 82,532,910 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx289,495,758 - 89,575,122 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0287,617,336 - 87,696,699 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0282,673,618 - 82,752,982 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0284,533,546 - 84,608,743 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl284,536,669 - 84,608,712 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02104,206,630 - 104,281,918 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4283,544,604 - 83,622,254 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera277,979,979 - 78,056,887 (-)NCBICelera
Cytogenetic Map2q23NCBI
Marchf6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955426228,788 - 278,888 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955426228,807 - 278,888 (+)NCBIChiLan1.0ChiLan1.0
MARCHF6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1343,880,988 - 3,947,127 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl343,884,487 - 3,943,035 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha348,383,624 - 8,466,476 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0343,785,457 - 3,868,858 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl343,786,417 - 3,869,038 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1343,835,287 - 3,918,110 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0343,813,874 - 3,897,483 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0344,044,972 - 4,127,896 (-)NCBIUU_Cfam_GSD_1.0
Marchf6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213236,892,183 - 236,966,037 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366432,455,328 - 2,507,225 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366432,455,496 - 2,507,185 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MARCHF6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1672,044,093 - 72,127,863 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11672,043,294 - 72,127,869 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21678,141,955 - 78,228,049 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MARCHF6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.149,891,847 - 9,970,617 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl49,891,580 - 9,970,300 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606418,574,413 - 18,654,209 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Marchf6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247517,715,007 - 7,780,460 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247517,715,065 - 7,781,320 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.





RefSeq Transcripts XM_003821953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000050123   ⟹   ENSPPAP00000027283
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl510,524,958 - 10,608,046 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000050129   ⟹   ENSPPAP00000027289
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl510,525,213 - 10,606,483 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000050131   ⟹   ENSPPAP00000027291
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl510,525,213 - 10,606,483 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000050132   ⟹   ENSPPAP00000027292
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl510,525,213 - 10,563,238 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000050139   ⟹   ENSPPAP00000027299
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl510,546,165 - 10,606,483 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000050148   ⟹   ENSPPAP00000027308
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl510,546,165 - 10,606,483 (+)Ensembl
RefSeq Acc Id: XM_003821953   ⟹   XP_003822001
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2410,594,867 - 10,681,923 (+)NCBI
NHGRI_mPanPan158,748,938 - 8,834,711 (+)NCBI
Mhudiblu_PPA_v0510,666,978 - 10,753,050 (+)NCBI
PanPan1.1510,524,958 - 10,608,046 (+)NCBI
Sequence:
Protein RefSeqs XP_003822001 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000027283.1
  ENSPPAP00000027289.1
  ENSPPAP00000027291.1
  ENSPPAP00000027292.1
  ENSPPAP00000027299.1
  ENSPPAP00000027308.1
RefSeq Acc Id: XP_003822001   ⟸   XM_003821953
- UniProtKB: A0A2R9BCC6 (UniProtKB/TrEMBL),   A0A2R9BCG5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000027283   ⟸   ENSPPAT00000050123
Ensembl Acc Id: ENSPPAP00000027291   ⟸   ENSPPAT00000050131
Ensembl Acc Id: ENSPPAP00000027299   ⟸   ENSPPAT00000050139
Ensembl Acc Id: ENSPPAP00000027292   ⟸   ENSPPAT00000050132
RING-CH-type



1 to 24 of 24 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSPPAG00000036651 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000050123.1 UniProtKB/TrEMBL
  ENSPPAT00000050129.1 UniProtKB/TrEMBL
  ENSPPAT00000050131.1 UniProtKB/TrEMBL
  ENSPPAT00000050132.1 UniProtKB/TrEMBL
  ENSPPAT00000050139.1 UniProtKB/TrEMBL
  ENSPPAT00000050148.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro Znf_RING-CH UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
KEGG Report pps:100979056 UniProtKB/TrEMBL
NCBI Gene MARCH6 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCHF6 UniProtKB/TrEMBL
  SSM4 PROTEIN UniProtKB/TrEMBL
Pfam RINGv UniProtKB/TrEMBL
PROSITE ZF_RING_CH UniProtKB/TrEMBL
SMART RINGv UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
UniProt A0A2R9BCC6 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BCE4_PANPA UniProtKB/TrEMBL
  A0A2R9BCF7_PANPA UniProtKB/TrEMBL
  A0A2R9BCG5 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BDQ5_PANPA UniProtKB/TrEMBL
  A0A2R9BG93_PANPA UniProtKB/TrEMBL
1 to 24 of 24 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-07-16 MARCHF6  membrane associated ring-CH-type finger 6  MARCH6  membrane associated ring-CH-type finger 6  Symbol and/or name change 5135510 APPROVED