TRIM31 (tripartite motif containing 31) - Rat Genome Database

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Gene: TRIM31 (tripartite motif containing 31) Pan paniscus
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Symbol: TRIM31
Name: tripartite motif containing 31
RGD ID: 11687323
Description: ENCODES a protein that exhibits transcription coactivator activity (ortholog); INVOLVED IN innate immune response (ortholog); negative regulation of viral entry into host cell (ortholog); negative regulation of viral transcription (ortholog); ASSOCIATED WITH irritant dermatitis (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: E3 ubiquitin-protein ligase TRIM31
RGD Orthologs
Human
Mouse
Rat
Squirrel
Pig
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1630,550,802 - 30,560,993 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl630,550,802 - 30,560,977 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0629,880,668 - 29,890,905 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
TRIM31
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1630,550,802 - 30,560,993 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl630,550,802 - 30,560,977 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0629,880,668 - 29,890,905 (-)NCBIMhudiblu_PPA_v0panPan3
TRIM31
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl630,102,897 - 30,113,090 (-)EnsemblGRCh38hg38GRCh38
GRCh38630,102,892 - 30,113,090 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37630,070,674 - 30,080,867 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36630,178,653 - 30,188,846 (-)NCBINCBI36hg18NCBI36
Build 34630,178,654 - 30,188,833NCBI
Celera631,668,926 - 31,679,124 (-)NCBI
Cytogenetic Map6p22.1NCBI
HuRef629,868,836 - 29,879,034 (-)NCBIHuRef
CHM1_1630,072,756 - 30,082,946 (-)NCBICHM1_1
Trim31
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391737,209,022 - 37,221,109 (+)NCBIGRCm39mm39
GRCm39 Ensembl1737,209,010 - 37,221,106 (+)Ensembl
GRCm381736,898,130 - 36,910,217 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1736,898,118 - 36,910,214 (+)EnsemblGRCm38mm10GRCm38
MGSCv371737,035,075 - 37,047,162 (+)NCBIGRCm37mm9NCBIm37
MGSCv361736,506,183 - 36,518,270 (+)NCBImm8
Celera1740,317,255 - 40,329,416 (+)NCBICelera
Cytogenetic Map17B1NCBI
Trim31
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2201,653,165 - 1,666,494 (-)NCBI
Rnor_6.0 Ensembl202,146,257 - 2,159,631 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0202,146,245 - 2,159,875 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0204,183,577 - 4,196,772 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4201,745,437 - 1,758,194 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1201,746,131 - 1,757,962 (-)NCBI
Celera202,361,720 - 2,375,040 (-)NCBICelera
Cytogenetic Map20p12NCBI
Trim31
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494632,646,388 - 32,657,283 (-)NCBI
SpeTri2.0NW_004936723934,808 - 945,279 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIM31
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1722,665,150 - 22,681,616 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2724,946,635 - 24,960,048 (+)NCBISscrofa10.2Sscrofa10.2susScr3


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034961693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide SSBP01000293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000061745   ⟹   ENSPPAP00000038836
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl630,550,802 - 30,560,977 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000061754   ⟹   ENSPPAP00000038844
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl630,551,110 - 30,560,775 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000061762   ⟹   ENSPPAP00000038853
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl630,551,294 - 30,560,692 (-)Ensembl
RefSeq Acc Id: XM_034961693   ⟹   XP_034817584
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0629,880,668 - 29,890,905 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034817584 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_034817584   ⟸   XM_034961693
RefSeq Acc Id: ENSPPAP00000038853   ⟸   ENSPPAT00000061762
RefSeq Acc Id: ENSPPAP00000038836   ⟸   ENSPPAT00000061745
RefSeq Acc Id: ENSPPAP00000038844   ⟸   ENSPPAT00000061754
Protein Domains
B box-type   RING-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000042134 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000038836 UniProtKB/TrEMBL
  ENSPPAP00000038844 UniProtKB/TrEMBL
  ENSPPAP00000038853 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000061745 UniProtKB/TrEMBL
  ENSPPAT00000061754 UniProtKB/TrEMBL
  ENSPPAT00000061762 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro Znf_B-box UniProtKB/TrEMBL
  Znf_B-box_chordata UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
KEGG Report pps:100983510 UniProtKB/TrEMBL
NCBI Gene TRIM31 ENTREZGENE
Pfam zf-B_box UniProtKB/TrEMBL
PRINTS BBOXZNFINGER UniProtKB/TrEMBL
PROSITE ZF_BBOX UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART BBOX UniProtKB/TrEMBL
  RING UniProtKB/TrEMBL
UniProt A0A2R9CA71_PANPA UniProtKB/TrEMBL
  A0A2R9CAF9_PANPA UniProtKB/TrEMBL
  A0A2R9CCX3_PANPA UniProtKB/TrEMBL