CSNK1E (casein kinase 1 epsilon) - Rat Genome Database

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Gene: CSNK1E (casein kinase 1 epsilon) Pan paniscus
Analyze
Symbol: CSNK1E
Name: casein kinase 1 epsilon
RGD ID: 12025788
Description: ENCODES a protein that exhibits protein serine/threonine kinase activity (ortholog); INVOLVED IN cellular response to nerve growth factor stimulus (ortholog); circadian behavior (ortholog); negative regulation of Wnt signaling pathway (ortholog); PARTICIPATES IN Hedgehog signaling pathway; p53 signaling pathway; ribosome biogenesis pathway; ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); Alzheimer's disease (ortholog); Cardiac Arrhythmias (ortholog); FOUND IN growth cone (ortholog); neuronal cell body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: casein kinase 1, epsilon; casein kinase I; casein kinase I isoform epsilon; LOC100975570
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22348,146,034 - 48,192,237 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12250,823,184 - 50,880,768 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02219,202,599 - 19,229,344 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12237,027,094 - 37,140,249 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2237,027,094 - 37,072,942 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CSNK1E
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22348,146,034 - 48,192,237 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12250,823,184 - 50,880,768 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02219,202,599 - 19,229,344 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12237,027,094 - 37,140,249 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2237,027,094 - 37,072,942 (-)Ensemblpanpan1.1panPan2
CSNK1E
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382238,290,691 - 38,318,084 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2238,290,691 - 38,318,084 (-)EnsemblGRCh38hg38GRCh38
GRCh372238,686,697 - 38,714,089 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362237,016,643 - 37,044,035 (-)NCBINCBI36Build 36hg18NCBI36
Build 342237,011,197 - 37,037,913NCBI
Celera2222,491,424 - 22,518,819 (-)NCBICelera
Cytogenetic Map22q13.1NCBI
HuRef2221,653,091 - 21,680,820 (-)NCBIHuRef
CHM1_12238,645,663 - 38,672,968 (-)NCBICHM1_1
T2T-CHM13v2.02238,754,994 - 38,782,389 (-)NCBIT2T-CHM13v2.0
Csnk1e
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391579,302,054 - 79,339,779 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1579,302,056 - 79,339,767 (-)EnsemblGRCm39 Ensembl
GRCm381579,417,852 - 79,455,579 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1579,417,856 - 79,455,566 (-)EnsemblGRCm38mm10GRCm38
MGSCv371579,248,282 - 79,272,487 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361579,245,111 - 79,269,262 (-)NCBIMGSCv36mm8
Celera1581,541,134 - 81,565,319 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.71NCBI
Csnk1e
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87112,863,726 - 112,887,338 (-)NCBIGRCr8
mRatBN7.27110,983,322 - 111,006,926 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7110,983,318 - 111,006,794 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7112,733,871 - 112,752,233 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07114,957,407 - 114,975,770 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07114,926,771 - 114,945,137 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07120,651,976 - 120,675,559 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7120,651,881 - 120,672,359 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07120,644,806 - 120,665,192 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47117,402,718 - 117,420,764 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17117,436,947 - 117,454,994 (-)NCBI
Celera7107,318,733 - 107,336,768 (-)NCBICelera
Cytogenetic Map7q34NCBI
Csnk1e
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541324,560,900 - 24,591,669 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541324,560,889 - 24,591,669 (-)NCBIChiLan1.0ChiLan1.0
CSNK1E
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11026,386,646 - 26,412,429 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1026,393,033 - 26,411,624 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1026,334,633 - 26,368,458 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01027,170,481 - 27,203,064 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1027,180,836 - 27,265,335 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11026,891,565 - 26,924,098 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01027,202,855 - 27,235,392 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01027,379,859 - 27,412,401 (+)NCBIUU_Cfam_GSD_1.0
CSNK1E
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl59,594,934 - 9,620,476 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.159,594,461 - 9,620,483 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.256,877,173 - 6,902,925 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103223312
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11920,992,927 - 21,025,866 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1920,998,009 - 21,022,576 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045104,722,716 - 104,775,265 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034948829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034948830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034948831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034948832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034948833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034948835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034948836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055105707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055105708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063603289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063603290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063603291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063603292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063603293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063603294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063603295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063603296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063603297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063603298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000045765   ⟹   ENSPPAP00000022949
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2237,027,094 - 37,072,942 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000045778   ⟹   ENSPPAP00000022961
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2237,032,942 - 37,050,526 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000045779   ⟹   ENSPPAP00000022962
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2237,033,486 - 37,050,526 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000045781   ⟹   ENSPPAP00000022964
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2237,034,265 - 37,050,526 (-)Ensembl
RefSeq Acc Id: XM_034948832   ⟹   XP_034804723
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22348,146,034 - 48,169,518 (-)NCBI
NHGRI_mPanPan12250,834,559 - 50,861,183 (-)NCBI
Mhudiblu_PPA_v02219,204,069 - 19,226,091 (-)NCBI
RefSeq Acc Id: XM_034948833   ⟹   XP_034804724
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22348,146,034 - 48,172,768 (-)NCBI
NHGRI_mPanPan12250,834,559 - 50,861,295 (-)NCBI
Mhudiblu_PPA_v02219,202,599 - 19,229,344 (-)NCBI
RefSeq Acc Id: XM_034948835   ⟹   XP_034804726
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22348,151,531 - 48,172,670 (-)NCBI
NHGRI_mPanPan12250,840,055 - 50,861,184 (-)NCBI
Mhudiblu_PPA_v02219,209,494 - 19,226,091 (-)NCBI
RefSeq Acc Id: XM_055105707   ⟹   XP_054961682
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22348,146,034 - 48,192,237 (-)NCBI
NHGRI_mPanPan12250,834,559 - 50,880,768 (-)NCBI
RefSeq Acc Id: XM_055105708   ⟹   XP_054961683
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22348,146,034 - 48,172,362 (-)NCBI
NHGRI_mPanPan12250,834,559 - 50,860,863 (-)NCBI
RefSeq Acc Id: XM_063603289   ⟹   XP_063459359
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22348,151,531 - 48,172,678 (-)NCBI
RefSeq Acc Id: XM_063603290   ⟹   XP_063459360
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22348,151,531 - 48,172,369 (-)NCBI
RefSeq Acc Id: XM_063603291   ⟹   XP_063459361
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22348,151,531 - 48,172,351 (-)NCBI
RefSeq Acc Id: XM_063603292   ⟹   XP_063459362
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22348,146,034 - 48,172,664 (-)NCBI
RefSeq Acc Id: XM_063603293   ⟹   XP_063459363
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22348,146,034 - 48,172,356 (-)NCBI
RefSeq Acc Id: XM_063603294   ⟹   XP_063459364
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22348,146,034 - 48,172,362 (-)NCBI
RefSeq Acc Id: XM_063603295   ⟹   XP_063459365
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22348,146,034 - 48,192,237 (-)NCBI
RefSeq Acc Id: XM_063603296   ⟹   XP_063459366
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22348,146,034 - 48,172,360 (-)NCBI
RefSeq Acc Id: XM_063603297   ⟹   XP_063459367
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22348,151,531 - 48,172,344 (-)NCBI
RefSeq Acc Id: XM_063603298   ⟹   XP_063459368
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22348,151,531 - 48,172,369 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_034804724   ⟸   XM_034948833
- Peptide Label: isoform X3
- UniProtKB: A0A2R9B1J6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034804723   ⟸   XM_034948832
- Peptide Label: isoform X3
- UniProtKB: A0A2R9B1J6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034804726   ⟸   XM_034948835
- Peptide Label: isoform X4
- UniProtKB: A0A2R9B1L2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000022962   ⟸   ENSPPAT00000045779
RefSeq Acc Id: ENSPPAP00000022961   ⟸   ENSPPAT00000045778
RefSeq Acc Id: ENSPPAP00000022964   ⟸   ENSPPAT00000045781
RefSeq Acc Id: ENSPPAP00000022949   ⟸   ENSPPAT00000045765
RefSeq Acc Id: XP_054961682   ⟸   XM_055105707
- Peptide Label: isoform X3
- UniProtKB: A0A2R9B1J6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054961683   ⟸   XM_055105708
- Peptide Label: isoform X3
- UniProtKB: A0A2R9B1J6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063459365   ⟸   XM_063603295
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063459362   ⟸   XM_063603292
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063459364   ⟸   XM_063603294
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063459366   ⟸   XM_063603296
- Peptide Label: isoform X3
- UniProtKB: A0A2R9B1J6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063459363   ⟸   XM_063603293
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063459359   ⟸   XM_063603289
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063459368   ⟸   XM_063603298
- Peptide Label: isoform X4
- UniProtKB: A0A2R9B1L2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063459360   ⟸   XM_063603290
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063459361   ⟸   XM_063603291
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063459367   ⟸   XM_063603297
- Peptide Label: isoform X4
- UniProtKB: A0A2R9B1L2 (UniProtKB/TrEMBL)
Protein Domains
Protein kinase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000034621 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000045765.1 UniProtKB/TrEMBL
  ENSPPAT00000045778.1 UniProtKB/TrEMBL
  ENSPPAT00000045779.1 UniProtKB/TrEMBL
  ENSPPAT00000045781.1 UniProtKB/TrEMBL
Gene3D-CATH Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro Kinase-like_dom_sf UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/TrEMBL
NCBI Gene LOC100975570 ENTREZGENE
PANTHER CASEIN KINASE I ISOFORM EPSILON UniProtKB/TrEMBL
  CASEIN KINASE-RELATED UniProtKB/TrEMBL
Pfam Pkinase UniProtKB/TrEMBL
PROSITE PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/TrEMBL
SMART S_TKc UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/TrEMBL
UniProt A0A2R9B0B6_PANPA UniProtKB/TrEMBL
  A0A2R9B1J6 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9B1L2 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9B6L0_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-01 CSNK1E  casein kinase 1 epsilon  LOC100975570  casein kinase I  Symbol and/or name change 5135510 APPROVED
2018-05-08 LOC100975570  casein kinase I    casein kinase I isoform epsilon  Symbol and/or name change 5135510 APPROVED